Wall clock time and date at job start Mon Mar 8 2021 14:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86306 * 109.46859 * 2 1 4 4 H 1.48501 * 109.46934 * 54.12418 * 3 2 1 5 5 H 1.48500 * 109.46712 * 174.11880 * 3 2 1 6 6 H 1.48490 * 109.47047 * 294.12053 * 3 2 1 7 7 C 1.50696 * 109.47194 * 120.00079 * 2 1 3 8 8 C 1.38301 * 119.99645 * 298.24673 * 7 2 1 9 9 F 1.35101 * 120.03212 * 0.02562 * 8 7 2 10 10 C 1.38929 * 119.92742 * 180.02562 * 8 7 2 11 11 O 1.36000 * 120.03519 * 180.02562 * 10 8 7 12 12 S 1.52207 * 114.00025 * 89.99963 * 11 10 8 13 13 O 1.42089 * 106.40256 * 188.53975 * 12 11 10 14 14 O 1.42107 * 106.39933 * 321.46312 * 12 11 10 15 15 C 1.76201 * 107.21736 * 74.99994 * 12 11 10 16 16 C 1.38236 * 120.00215 * 270.27958 * 15 12 11 17 17 C 1.38229 * 120.00422 * 180.02562 * 16 15 12 18 18 C 1.38235 * 119.99637 * 359.97030 * 17 16 15 19 Xx 1.81005 * 119.99982 * 179.97438 * 18 17 16 20 19 F 9.74866 * 122.38232 * 248.88040 * 8 1 2 21 20 F 1.60995 * 90.00179 * 135.00142 * 19 18 17 22 21 F 1.61008 * 90.00040 * 315.00131 * 19 18 17 23 22 F 1.61004 * 90.00078 * 225.00379 * 19 18 17 24 23 F 1.61001 * 89.99827 * 45.00056 * 19 18 17 25 24 C 1.38236 * 120.00487 * 359.96147 * 18 17 16 26 25 C 1.38234 * 120.00131 * 89.99740 * 15 12 11 27 26 C 1.38590 * 119.92976 * 359.97438 * 10 8 7 28 27 C 1.38230 * 119.99347 * 0.02562 * 27 10 8 29 28 C 1.38419 * 120.06957 * 359.72300 * 28 27 10 30 29 F 1.35095 * 119.96471 * 179.97438 * 29 28 27 31 30 H 0.96699 * 113.99668 * 299.99996 * 1 2 3 32 31 H 1.08997 * 109.46793 * 240.00176 * 2 1 3 33 32 H 1.08009 * 119.99588 * 359.97221 * 16 15 12 34 33 H 1.07995 * 120.00326 * 179.97438 * 17 16 15 35 34 H 1.07992 * 120.00546 * 180.02562 * 25 18 17 36 35 H 1.08005 * 119.99745 * 0.21395 * 26 15 12 37 36 H 1.07996 * 120.00868 * 179.97438 * 27 10 8 38 37 H 1.07999 * 119.96858 * 179.97438 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 1 1.4414 2.4967 1.1345 5 1 3.5280 1.7590 0.1435 6 1 1.6755 2.4139 -1.2778 7 6 1.9314 -0.7104 1.2304 8 6 1.6274 -0.2171 2.4862 9 9 0.8798 0.9013 2.6105 10 6 2.0917 -0.8728 3.6195 11 8 1.7937 -0.3899 4.8555 12 16 0.5038 -0.9451 5.4426 13 8 0.2452 -0.1967 6.6224 14 8 -0.4183 -1.0416 4.3656 15 6 0.8355 -2.5955 5.9629 16 6 0.6533 -3.6471 5.0843 17 6 0.9130 -4.9419 5.4927 18 6 1.3555 -5.1851 6.7795 19 9 1.9946 -8.3890 7.7891 20 9 3.0703 -6.3912 7.9933 21 9 0.3194 -7.3702 6.6358 22 9 0.9144 -6.6014 8.6948 23 9 2.4753 -7.1599 5.9343 24 6 1.5390 -4.1335 7.6578 25 6 1.2834 -2.8382 7.2479 26 6 2.8580 -2.0202 3.4893 27 6 3.1600 -2.5106 2.2327 28 6 2.6930 -1.8601 1.1037 29 9 2.9898 -2.3409 -0.1234 30 1 -0.3933 0.4417 0.7651 31 1 1.7923 -0.5138 -0.8900 32 1 0.3072 -3.4570 4.0790 33 1 0.7703 -5.7634 4.8064 34 1 1.8851 -4.3234 8.6630 35 1 1.4268 -2.0165 7.9341 36 1 3.2200 -2.5308 4.3695 37 1 3.7575 -3.4046 2.1317 RHF calculation, no. of doubly occupied orbitals= 73 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_9576490_8643202.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:01:34 Heat of formation + Delta-G solvation = 228.476165 kcal Electronic energy + Delta-G solvation = -40582.402438 eV Core-core repulsion = 33840.346779 eV Total energy + Delta-G solvation = -6742.055658 eV No. of doubly occupied orbitals = 73 Molecular weight (most abundant/longest-lived isotopes) = 424.022 amu Computer time = 26.86 seconds Orbital eigenvalues (eV) -50.70616 -50.29722 -44.70080 -44.49365 -43.94660 -43.80181 -43.69837 -42.38954 -41.30481 -39.73811 -38.84936 -37.73391 -37.49080 -33.30152 -33.16073 -32.83604 -31.26811 -27.45507 -25.10876 -24.84506 -24.73768 -23.65851 -22.13226 -20.67217 -19.61848 -19.49235 -19.23044 -18.90555 -18.28384 -17.59839 -17.41724 -17.17930 -16.80465 -16.66143 -16.58535 -16.48903 -16.11923 -15.82478 -15.69506 -15.56264 -15.47368 -15.38445 -15.30976 -14.96218 -14.79203 -14.69529 -14.52154 -14.39284 -14.35850 -14.26848 -14.12599 -13.90815 -13.76517 -13.68789 -13.64902 -13.60130 -13.53304 -13.42899 -13.34287 -13.16877 -13.12838 -12.74120 -12.68043 -12.59058 -12.24460 -12.21099 -11.81503 -11.58001 -11.20713 -11.07627 -10.93310 -10.19758 -10.10620 -5.35601 -4.94542 -3.36878 -1.64313 -1.36196 -0.77975 -0.57789 -0.52388 0.74819 0.95664 1.35443 1.37606 1.39282 1.72218 1.88020 2.09348 2.33473 2.38312 2.49576 2.67852 2.76637 2.95232 3.06582 3.21506 3.32364 3.43281 3.50798 3.56019 3.69287 3.86744 3.94849 4.06944 4.19220 4.25336 4.34888 4.44901 4.49999 4.57280 4.61252 4.73815 5.26904 6.40519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.080 4.080 3 Si 0.948 3.052 4 H -0.246 1.246 5 H -0.246 1.246 6 H -0.253 1.253 7 C -0.183 4.183 8 C 0.135 3.865 9 F -0.116 7.116 10 C 0.003 3.997 11 O -0.636 6.636 12 S 2.686 3.314 13 O -0.928 6.928 14 O -0.943 6.943 15 C -0.695 4.695 16 C 0.052 3.948 17 C -0.123 4.123 18 C 0.408 3.592 19 F -0.057 7.057 20 F -0.244 7.244 21 F -0.231 7.231 22 F -0.118 7.118 23 F -0.195 7.195 24 C -0.126 4.126 25 C 0.064 3.936 26 C -0.055 4.055 27 C -0.121 4.121 28 C 0.171 3.829 29 F -0.115 7.115 30 H 0.386 0.614 31 H 0.143 0.857 32 H 0.221 0.779 33 H 0.204 0.796 34 H 0.203 0.797 35 H 0.225 0.775 36 H 0.202 0.798 37 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.880 5.979 -3.214 7.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.347 6.347 2 C -0.190 4.190 3 Si 0.768 3.232 4 H -0.169 1.169 5 H -0.169 1.169 6 H -0.176 1.176 7 C -0.186 4.186 8 C 0.113 3.887 9 F -0.095 7.095 10 C -0.040 4.040 11 O -0.595 6.595 12 S 2.777 3.223 13 O -0.926 6.926 14 O -0.942 6.942 15 C -0.777 4.777 16 C 0.035 3.965 17 C -0.141 4.141 18 C 0.402 3.598 19 F -0.057 7.057 20 F -0.243 7.243 21 F -0.229 7.229 22 F -0.117 7.117 23 F -0.194 7.194 24 C -0.144 4.144 25 C 0.046 3.954 26 C -0.074 4.074 27 C -0.139 4.139 28 C 0.150 3.850 29 F -0.093 7.093 30 H 0.236 0.764 31 H 0.161 0.839 32 H 0.237 0.763 33 H 0.221 0.779 34 H 0.220 0.780 35 H 0.241 0.759 36 H 0.219 0.781 37 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 3.007 7.281 -3.782 8.738 hybrid contribution -0.102 -1.986 1.190 2.317 sum 2.905 5.295 -2.592 6.572 Atomic orbital electron populations 1.86558 1.16410 1.81640 1.50099 1.24943 0.85690 1.10817 0.97557 0.85754 0.80713 0.74783 0.81927 1.16864 1.16930 1.17636 1.20360 1.04323 0.98993 0.94897 1.17409 0.93576 0.85009 0.92746 1.91536 1.73403 1.48203 1.96334 1.18163 1.08579 0.99045 0.78170 1.85836 1.63324 1.73715 1.36621 1.02591 0.72715 0.73045 0.73999 1.93689 1.81757 1.68483 1.48670 1.93696 1.61063 1.86001 1.53391 1.31800 1.15798 1.25632 1.04499 1.21642 0.89266 0.84121 1.01516 1.22179 0.99666 0.99494 0.92760 1.27764 1.00540 0.39118 0.92338 1.99968 1.97817 1.51816 1.56128 1.99928 1.40946 1.92883 1.90506 1.99931 1.95305 1.93422 1.34287 1.99950 1.39427 1.91402 1.80952 1.99911 1.96359 1.69296 1.53828 1.22286 1.01945 0.85655 1.04533 1.21636 0.87346 0.92614 0.93775 1.21631 0.92931 0.91718 1.01164 1.21585 1.01102 1.02788 0.88459 1.17386 0.95059 0.90923 0.81617 1.91608 1.90562 1.86664 1.40443 0.76436 0.83906 0.76269 0.77888 0.77995 0.75865 0.78116 0.78241 Number of geometries 1 Number of calculations of the screened coulomb radii 6 The total number of SCF iterations 457. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.68 12.88 -148.98 -1.92 -1.23 16 2 C -0.08 0.33 2.79 71.23 0.20 0.53 16 3 Si 0.95 -2.56 26.52 68.60 1.82 -0.74 16 4 H -0.25 0.28 6.17 99.48 0.61 0.89 16 5 H -0.25 0.63 7.11 99.48 0.71 1.33 16 6 H -0.25 0.03 7.11 99.48 0.71 0.73 16 7 C -0.18 1.07 4.58 -19.79 -0.09 0.98 16 8 C 0.13 -0.63 5.79 22.45 0.13 -0.50 16 9 F -0.12 0.16 12.71 44.97 0.57 0.73 16 10 C 0.00 -0.03 4.80 22.52 0.11 0.08 16 11 O -0.64 5.37 10.02 -62.83 -0.63 4.74 16 12 S 2.69 -21.31 5.42 -56.49 -0.31 -21.62 16 13 O -0.93 1.83 17.27 -118.78 -2.05 -0.22 16 14 O -0.94 3.98 15.45 -118.78 -1.84 2.15 16 15 C -0.69 10.18 5.28 22.27 0.12 10.30 16 16 C 0.05 -0.87 8.39 22.27 0.19 -0.68 16 17 C -0.12 1.50 8.62 22.27 0.19 1.69 16 18 C 0.41 -2.32 4.82 22.27 0.11 -2.22 16 19 F -0.06 -1.00 16.66 44.97 0.75 -0.25 16 20 F -0.24 -2.47 15.32 44.97 0.69 -1.78 16 21 F -0.23 -2.51 15.31 44.97 0.69 -1.82 16 22 F -0.12 -1.08 15.31 44.97 0.69 -0.39 16 23 F -0.20 -1.84 15.31 44.97 0.69 -1.15 16 24 C -0.13 1.50 8.62 22.27 0.19 1.69 16 25 C 0.06 -1.04 9.52 22.27 0.21 -0.83 16 26 C -0.05 0.89 8.35 22.35 0.19 1.08 16 27 C -0.12 1.93 10.02 22.31 0.22 2.15 16 28 C 0.17 -1.64 7.24 22.37 0.16 -1.47 16 29 F -0.11 0.83 16.19 44.97 0.73 1.55 16 30 H 0.39 -1.88 7.20 -74.06 -0.53 -2.41 16 31 H 0.14 -0.92 6.95 -2.39 -0.02 -0.94 16 32 H 0.22 -4.81 7.62 -2.91 -0.02 -4.83 16 33 H 0.20 -2.72 7.40 -2.91 -0.02 -2.74 16 34 H 0.20 -2.65 7.40 -2.91 -0.02 -2.68 16 35 H 0.22 -4.82 7.62 -2.91 -0.02 -4.84 16 36 H 0.20 -4.82 7.93 -2.91 -0.02 -4.85 16 37 H 0.20 -4.37 8.06 -2.91 -0.02 -4.40 16 Total: 0.00 -35.11 363.77 3.15 -31.95 By element: Atomic # 1 Polarization: -26.07 SS G_CDS: 1.34 Total: -24.72 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: 1.93 Total: 12.80 kcal Atomic # 8 Polarization: 11.86 SS G_CDS: -6.44 Total: 5.42 kcal Atomic # 9 Polarization: -7.90 SS G_CDS: 4.80 Total: -3.10 kcal Atomic # 14 Polarization: -2.56 SS G_CDS: 1.82 Total: -0.74 kcal Atomic # 16 Polarization: -21.31 SS G_CDS: -0.31 Total: -21.62 kcal Total: -35.11 3.15 -31.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9576490_8643202.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 260.431 kcal (2) G-P(sol) polarization free energy of solvation -35.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 225.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 228.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 26.86 seconds