Wall clock time and date at job start Mon Mar 8 2021 14:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86301 * 109.47001 * 2 1 4 4 C 1.50698 * 109.46862 * 119.99827 * 2 1 3 5 5 C 1.38235 * 120.00365 * 65.00124 * 4 2 1 6 6 C 1.38237 * 120.00397 * 179.97438 * 5 4 2 7 7 C 1.38237 * 119.99608 * 359.97438 * 6 5 4 8 8 S 1.76203 * 119.99729 * 180.02562 * 7 6 5 9 9 O 1.42104 * 106.40146 * 336.46247 * 8 7 6 10 10 O 1.42095 * 106.40229 * 203.54504 * 8 7 6 11 11 N 1.65602 * 107.21635 * 90.00082 * 8 7 6 12 12 C 1.46498 * 119.99612 * 65.28001 * 11 8 7 13 13 H 1.08996 * 112.85084 * 13.52359 * 12 11 8 14 14 C 1.53780 * 113.61362 * 144.72117 * 12 11 8 15 15 C 1.53779 * 87.08147 * 89.11556 * 14 12 11 16 16 H 1.09000 * 113.61662 * 270.80087 * 15 14 12 17 17 C 1.50700 * 113.61747 * 139.97905 * 15 14 12 18 18 C 1.38242 * 119.98781 * 299.72441 * 17 15 14 19 19 C 1.38218 * 120.01016 * 179.76580 * 18 17 15 20 20 C 1.38347 * 119.98659 * 0.52737 * 19 18 17 21 21 Cl 1.73603 * 120.01056 * 179.70227 * 20 19 18 22 22 C 1.38352 * 119.97668 * 359.72717 * 20 19 18 23 23 C 1.38214 * 119.98427 * 359.97438 * 22 20 19 24 24 C 1.53782 * 87.08321 * 25.43333 * 15 14 12 25 25 C 1.38232 * 120.00116 * 0.27904 * 7 6 5 26 26 C 1.38231 * 120.00148 * 359.53678 * 25 7 6 27 27 H 0.96701 * 114.00159 * 299.99779 * 1 2 3 28 28 H 1.08997 * 109.47328 * 239.99888 * 2 1 3 29 29 H 1.48496 * 109.99901 * 299.99843 * 3 2 1 30 30 H 1.48499 * 110.00230 * 61.31979 * 3 2 1 31 31 H 1.08004 * 119.99553 * 0.02562 * 5 4 2 32 32 H 1.07999 * 119.99949 * 180.02562 * 6 5 4 33 33 H 0.97001 * 119.99942 * 244.99525 * 11 8 7 34 34 H 1.09006 * 113.61332 * 203.66166 * 14 12 11 35 35 H 1.08995 * 113.61837 * 334.56864 * 14 12 11 36 36 H 1.08000 * 119.98840 * 0.02562 * 18 17 15 37 37 H 1.07997 * 120.00316 * 180.25934 * 19 18 17 38 38 H 1.08001 * 120.00456 * 180.02562 * 22 20 19 39 39 H 1.08001 * 119.98981 * 179.97438 * 23 22 20 40 40 H 1.09006 * 113.61251 * 220.02708 * 24 15 14 41 41 H 1.08991 * 113.61651 * 89.11417 * 24 15 14 42 42 H 1.08001 * 119.99701 * 179.72178 * 25 7 6 43 43 H 1.08001 * 120.00266 * 180.23536 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.6847 -2.0601 1.3985 6 6 2.1459 -2.7119 2.5270 7 6 2.8541 -2.0139 3.4872 8 16 3.4426 -2.8448 4.9253 9 8 2.6132 -3.9858 5.0971 10 8 3.6099 -1.8482 5.9243 11 7 4.9573 -3.4159 4.5761 12 6 6.0516 -2.4777 4.3151 13 1 5.8109 -1.4551 4.6057 14 6 7.4152 -2.9614 4.8361 15 6 7.6054 -3.6456 3.4721 16 1 7.2172 -4.6635 3.4363 17 6 9.0077 -3.5347 2.9313 18 6 9.5567 -2.2902 2.6848 19 6 10.8445 -2.1878 2.1933 20 6 11.5801 -3.3314 1.9379 21 17 13.1949 -3.2037 1.3134 22 6 11.0282 -4.5767 2.1799 23 6 9.7425 -4.6777 2.6771 24 6 6.6393 -2.5953 2.8988 25 6 3.0962 -0.6630 3.3218 26 6 2.6383 -0.0121 2.1915 27 1 -0.3933 0.4417 0.7651 28 1 1.7924 -0.5138 -0.8899 29 1 1.5615 2.4678 -1.2085 30 1 1.5879 2.4586 1.2242 31 1 1.1324 -2.6057 0.6476 32 1 1.9535 -3.7665 2.6579 33 1 5.1207 -4.3717 4.5485 34 1 8.1232 -2.1536 5.0218 35 1 7.3414 -3.6607 5.6688 36 1 8.9808 -1.3977 2.8802 37 1 11.2749 -1.2154 2.0047 38 1 11.6021 -5.4697 1.9810 39 1 9.3114 -5.6498 2.8656 40 1 5.9390 -2.9993 2.1677 41 1 7.1351 -1.6876 2.5550 42 1 3.6457 -0.1168 4.0742 43 1 2.8307 1.0425 2.0604 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_9610468_13421422.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:43:37 Heat of formation + Delta-G solvation = -27.864201 kcal Electronic energy + Delta-G solvation = -29468.639071 eV Core-core repulsion = 25213.004058 eV Total energy + Delta-G solvation = -4255.635013 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 380.068 amu Computer time = 2.52 seconds Orbital eigenvalues (eV) -41.43221 -40.79888 -39.48912 -38.28112 -37.93124 -37.37409 -36.91404 -34.36859 -33.12660 -32.31071 -32.16934 -31.35615 -27.35959 -26.88129 -26.18307 -24.21769 -23.98502 -23.09597 -22.78037 -20.99164 -20.36874 -19.40045 -18.83561 -18.33698 -18.17110 -17.38798 -16.96167 -16.73753 -16.55428 -16.45468 -16.24163 -15.93306 -15.61878 -15.49932 -15.11734 -14.91117 -14.74652 -14.56840 -14.50555 -14.13910 -14.06528 -13.80434 -13.76402 -13.62115 -13.16201 -13.09460 -12.93972 -12.75301 -12.67862 -12.63070 -12.58890 -12.07511 -11.96663 -11.85027 -11.77228 -11.74727 -11.40099 -10.83925 -10.71100 -10.49246 -10.24351 -10.09995 -9.55897 -5.13539 -0.78528 -0.43370 0.05604 0.08917 0.23061 1.07076 1.16767 1.43342 1.78082 1.81372 2.24002 2.50321 2.68088 3.13286 3.16571 3.26744 3.36029 3.43079 3.47120 3.63464 3.67633 3.69115 3.77397 3.82943 3.95428 4.01927 4.05280 4.21677 4.23077 4.28721 4.32261 4.46339 4.49893 4.54776 4.64079 4.70686 4.74194 4.78513 4.84377 4.84515 4.88176 4.90129 5.12501 5.14130 5.19158 5.23410 5.48497 5.58937 5.72421 5.77443 6.18719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.525 6.525 2 C -0.084 4.084 3 Si 0.688 3.312 4 C -0.061 4.061 5 C -0.113 4.113 6 C -0.016 4.016 7 C -0.672 4.672 8 S 2.696 3.304 9 O -0.954 6.954 10 O -0.951 6.951 11 N -1.097 6.097 12 C 0.123 3.877 13 H 0.109 0.891 14 C -0.133 4.133 15 C -0.075 4.075 16 H 0.101 0.899 17 C -0.067 4.067 18 C -0.105 4.105 19 C -0.107 4.107 20 C -0.039 4.039 21 Cl -0.070 7.070 22 C -0.108 4.108 23 C -0.104 4.104 24 C -0.148 4.148 25 C -0.015 4.015 26 C -0.139 4.139 27 H 0.378 0.622 28 H 0.124 0.876 29 H -0.254 1.254 30 H -0.257 1.257 31 H 0.136 0.864 32 H 0.143 0.857 33 H 0.420 0.580 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.131 0.869 40 H 0.080 0.920 41 H 0.099 0.901 42 H 0.145 0.855 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.885 0.912 -2.152 3.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.331 6.331 2 C -0.194 4.194 3 Si 0.589 3.411 4 C -0.061 4.061 5 C -0.132 4.132 6 C -0.036 4.036 7 C -0.759 4.759 8 S 2.786 3.214 9 O -0.944 6.944 10 O -0.941 6.941 11 N -0.855 5.855 12 C 0.015 3.985 13 H 0.127 0.873 14 C -0.172 4.172 15 C -0.093 4.093 16 H 0.119 0.881 17 C -0.067 4.067 18 C -0.123 4.123 19 C -0.126 4.126 20 C -0.066 4.066 21 Cl -0.041 7.041 22 C -0.126 4.126 23 C -0.122 4.122 24 C -0.187 4.187 25 C -0.034 4.034 26 C -0.158 4.158 27 H 0.226 0.774 28 H 0.142 0.858 29 H -0.178 1.178 30 H -0.182 1.182 31 H 0.154 0.846 32 H 0.161 0.839 33 H 0.256 0.744 34 H 0.118 0.882 35 H 0.100 0.900 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.149 0.851 40 H 0.099 0.901 41 H 0.118 0.882 42 H 0.162 0.838 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.409 1.555 -1.965 3.476 hybrid contribution -0.761 -0.434 -0.391 0.960 sum 1.647 1.120 -2.356 3.085 Atomic orbital electron populations 1.86636 1.17125 1.79992 1.49396 1.25197 0.84419 1.11486 0.98289 0.94960 0.91457 0.74067 0.80625 1.20677 0.94970 0.94836 0.95656 1.21196 0.99837 0.93995 0.98176 1.20993 0.91273 1.00115 0.91179 1.30980 1.16060 1.06369 1.22511 1.01905 0.72188 0.73586 0.73764 1.93627 1.65540 1.49940 1.85307 1.93618 1.85394 1.60869 1.54201 1.55351 1.25032 1.16645 1.88514 1.21696 0.87252 0.93030 0.96556 0.87293 1.23419 0.95821 1.01209 0.96748 1.21588 0.91295 1.00048 0.96378 0.88060 1.19800 0.95655 0.93057 0.98165 1.20983 0.94546 0.97636 0.99161 1.21086 0.94343 0.97733 0.99412 1.21001 0.87557 0.95251 1.02754 1.98395 1.21641 1.98474 1.85618 1.21102 0.95842 0.96320 0.99366 1.21051 0.93596 0.98708 0.98825 1.23645 0.98402 0.99838 0.96824 1.20892 0.94276 0.92022 0.96204 1.21206 0.99857 1.00240 0.94480 0.77384 0.85813 1.17832 1.18204 0.84565 0.83926 0.74426 0.88210 0.89959 0.84863 0.84827 0.84897 0.85105 0.90115 0.88249 0.83776 0.84547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.03 12.83 -35.23 -0.45 -0.48 16 2 C -0.08 0.15 2.80 36.00 0.10 0.25 16 3 Si 0.69 -1.62 29.88 -169.99 -5.08 -6.70 16 4 C -0.06 0.08 5.35 -104.62 -0.56 -0.48 16 5 C -0.11 0.10 9.69 -39.58 -0.38 -0.28 16 6 C -0.02 0.01 9.52 -39.58 -0.38 -0.37 16 7 C -0.67 0.49 5.95 -39.58 -0.24 0.25 16 8 S 2.70 -0.08 5.71 -107.50 -0.61 -0.69 16 9 O -0.95 -2.96 17.28 -57.17 -0.99 -3.94 16 10 O -0.95 -2.69 16.79 -57.17 -0.96 -3.65 16 11 N -1.10 3.43 5.73 -4.20 -0.02 3.41 16 12 C 0.12 -0.48 4.51 -67.12 -0.30 -0.78 16 13 H 0.11 -0.49 7.76 -51.93 -0.40 -0.89 16 14 C -0.13 0.51 7.33 -25.92 -0.19 0.32 16 15 C -0.07 0.29 3.80 -90.96 -0.35 -0.06 16 16 H 0.10 -0.45 8.06 -51.93 -0.42 -0.87 16 17 C -0.07 0.15 5.29 -104.62 -0.55 -0.41 16 18 C -0.11 0.23 8.62 -39.59 -0.34 -0.11 16 19 C -0.11 0.10 9.83 -39.55 -0.39 -0.29 16 20 C -0.04 -0.01 6.32 -39.50 -0.25 -0.26 16 21 Cl -0.07 -0.07 28.96 -51.86 -1.50 -1.57 16 22 C -0.11 0.05 9.83 -39.55 -0.39 -0.34 16 23 C -0.10 0.16 9.71 -39.59 -0.38 -0.22 16 24 C -0.15 0.66 7.25 -25.92 -0.19 0.48 16 25 C -0.01 0.02 9.52 -39.59 -0.38 -0.36 16 26 C -0.14 0.26 8.67 -39.58 -0.34 -0.08 16 27 H 0.38 -0.99 8.70 45.56 0.40 -0.59 16 28 H 0.12 -0.33 7.96 -51.93 -0.41 -0.74 16 29 H -0.25 -0.30 7.11 56.52 0.40 0.11 16 30 H -0.26 0.11 7.01 56.52 0.40 0.50 16 31 H 0.14 -0.23 8.06 -52.48 -0.42 -0.65 16 32 H 0.14 -0.25 7.62 -52.49 -0.40 -0.65 16 33 H 0.42 -1.96 8.79 -34.47 -0.30 -2.26 16 34 H 0.10 -0.42 7.73 -51.93 -0.40 -0.82 16 35 H 0.08 -0.29 8.14 -51.93 -0.42 -0.71 16 36 H 0.13 -0.58 6.64 -52.49 -0.35 -0.93 16 37 H 0.13 -0.27 8.06 -52.49 -0.42 -0.70 16 38 H 0.13 -0.19 8.06 -52.49 -0.42 -0.62 16 39 H 0.13 -0.42 8.05 -52.49 -0.42 -0.84 16 40 H 0.08 -0.34 8.14 -51.93 -0.42 -0.77 16 41 H 0.10 -0.53 6.29 -51.93 -0.33 -0.86 16 42 H 0.14 -0.43 7.61 -52.49 -0.40 -0.83 16 43 H 0.14 -0.50 4.85 -52.49 -0.25 -0.75 16 LS Contribution 385.82 15.07 5.81 5.81 Total: 0.00 -10.09 385.82 -14.32 -24.41 By element: Atomic # 1 Polarization: -8.85 SS G_CDS: -5.01 Total: -13.86 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -5.51 Total: -2.73 kcal Atomic # 7 Polarization: 3.43 SS G_CDS: -0.02 Total: 3.41 kcal Atomic # 8 Polarization: -5.68 SS G_CDS: -2.40 Total: -8.08 kcal Atomic # 14 Polarization: -1.62 SS G_CDS: -5.08 Total: -6.70 kcal Atomic # 16 Polarization: -0.08 SS G_CDS: -0.61 Total: -0.69 kcal Atomic # 17 Polarization: -0.07 SS G_CDS: -1.50 Total: -1.57 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -10.09 -14.32 -24.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9610468_13421422.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.451 kcal (2) G-P(sol) polarization free energy of solvation -10.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.52 seconds