Wall clock time and date at job start Mon Mar 8 2021 14:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86309 * 109.46940 * 2 1 4 4 C 1.50701 * 109.47297 * 240.00480 * 2 1 3 5 5 C 1.33392 * 122.53568 * 284.99722 * 4 2 1 6 6 S 1.76201 * 125.20402 * 0.02562 * 5 4 2 7 7 O 1.42105 * 106.40343 * 66.17478 * 6 5 4 8 8 O 1.42107 * 106.40025 * 293.25730 * 6 5 4 9 9 N 1.65592 * 107.21939 * 179.71760 * 6 5 4 10 10 C 1.46506 * 119.99896 * 65.00038 * 9 6 5 11 11 H 1.08992 * 112.90684 * 346.24963 * 10 9 6 12 12 C 1.54049 * 113.61276 * 117.62051 * 10 9 6 13 13 C 1.53781 * 87.08031 * 89.07129 * 12 10 9 14 14 H 1.09003 * 113.69043 * 270.86777 * 13 12 10 15 15 C 1.50698 * 113.61565 * 139.97986 * 13 12 10 16 16 C 1.38243 * 119.98384 * 322.22213 * 15 13 12 17 17 C 1.38217 * 120.01374 * 179.77343 * 16 15 13 18 18 C 1.38351 * 119.98341 * 0.52657 * 17 16 15 19 19 Cl 1.73598 * 120.01461 * 179.70622 * 18 17 16 20 20 C 1.38354 * 119.97357 * 359.72951 * 18 17 16 21 21 C 1.38208 * 119.98857 * 359.97438 * 20 18 17 22 22 C 1.53781 * 87.08070 * 25.42738 * 13 12 10 23 23 S 1.75879 * 109.59378 * 179.74924 * 5 4 2 24 24 C 1.75887 * 90.96914 * 0.22832 * 23 5 4 25 25 C 1.33386 * 109.59358 * 0.02562 * 24 23 5 26 26 H 0.96706 * 113.99745 * 299.99821 * 1 2 3 27 27 H 1.08993 * 109.47729 * 119.99993 * 2 1 3 28 28 H 1.48501 * 109.99607 * 178.68155 * 3 2 1 29 29 H 1.48495 * 109.99757 * 300.00100 * 3 2 1 30 30 H 0.97000 * 119.99920 * 244.99697 * 9 6 5 31 31 H 1.09005 * 113.62125 * 334.52173 * 12 10 9 32 32 H 1.08996 * 113.68970 * 203.62749 * 12 10 9 33 33 H 1.08000 * 119.99143 * 0.02562 * 16 15 13 34 34 H 1.08000 * 120.00988 * 180.25717 * 17 16 15 35 35 H 1.08007 * 120.00839 * 179.97438 * 20 18 17 36 36 H 1.08003 * 119.99981 * 180.02562 * 21 20 18 37 37 H 1.09002 * 113.61445 * 89.11830 * 22 13 12 38 38 H 1.09002 * 113.61408 * 219.93560 * 22 13 12 39 39 H 1.08004 * 125.19788 * 179.97438 * 24 23 5 40 40 H 1.07998 * 122.53440 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 1.8961 -2.0377 -1.3573 6 16 1.2752 -3.1576 -0.1469 7 8 -0.1208 -2.9102 -0.0499 8 8 2.1577 -3.0775 0.9640 9 7 1.4375 -4.6857 -0.7638 10 6 2.7717 -5.2352 -1.0178 11 1 3.5547 -4.4776 -0.9908 12 6 3.0928 -6.4877 -0.1803 13 6 2.4761 -7.3129 -1.3220 14 1 1.4028 -7.4720 -1.2172 15 6 3.2291 -8.5828 -1.6240 16 6 4.6101 -8.5982 -1.5637 17 6 5.3011 -9.7638 -1.8360 18 6 4.6109 -10.9126 -2.1796 19 17 5.4784 -12.3751 -2.5291 20 6 3.2290 -10.8952 -2.2449 21 6 2.5389 -9.7306 -1.9665 22 6 2.8375 -6.1455 -2.2555 23 16 2.5571 -2.4987 -2.9206 24 6 2.8591 -0.8134 -3.3233 25 6 2.4678 -0.0351 -2.3132 26 1 -0.3933 0.4417 0.7651 27 1 1.7924 -0.5138 0.8899 28 1 3.5345 1.7703 0.0321 29 1 1.5614 2.4679 -1.2085 30 1 0.6493 -5.2170 -0.9570 31 1 2.5316 -6.5451 0.7524 32 1 4.1601 -6.6612 -0.0434 33 1 5.1489 -7.7001 -1.2998 34 1 6.3798 -9.7767 -1.7848 35 1 2.6897 -11.7916 -2.5135 36 1 1.4601 -9.7170 -2.0170 37 1 3.8354 -6.2243 -2.6870 38 1 2.0709 -5.9276 -2.9991 39 1 3.2955 -0.4625 -4.2468 40 1 2.5581 1.0408 -2.3402 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_9610468_13652106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:43:41 Heat of formation + Delta-G solvation = -12.337646 kcal Electronic energy + Delta-G solvation = -28287.435667 eV Core-core repulsion = 24121.626183 eV Total energy + Delta-G solvation = -4165.809485 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.025 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -41.42629 -40.00258 -39.48159 -38.10809 -37.36977 -37.21000 -36.81157 -34.42337 -32.16033 -31.60319 -31.35136 -28.12430 -26.88703 -26.19786 -24.27304 -23.98264 -22.81918 -21.76088 -20.67270 -19.84901 -19.67288 -18.58214 -18.48733 -18.02285 -17.39662 -17.27555 -16.72730 -16.46615 -16.23742 -15.96239 -15.60444 -15.47337 -15.10077 -14.76021 -14.68163 -14.51232 -14.43811 -14.28505 -14.10392 -13.80534 -13.79399 -13.61168 -13.08475 -12.98979 -12.88705 -12.69998 -12.66034 -12.59270 -12.52845 -12.26817 -12.06706 -11.86055 -11.80097 -11.76014 -11.42027 -10.75767 -10.50955 -10.44593 -10.09078 -9.74752 -9.55175 -5.09711 -0.73689 -0.71956 0.06187 0.14867 0.24024 0.49894 1.10494 1.12721 1.17382 1.56673 1.82457 1.83968 2.50901 2.57623 3.15723 3.21822 3.42159 3.44998 3.58416 3.68725 3.73790 3.76437 3.78339 3.84033 3.89685 3.97510 4.02101 4.14602 4.23503 4.32109 4.45629 4.54004 4.54589 4.65014 4.72238 4.76589 4.77755 4.87297 4.91643 4.92538 5.12818 5.19948 5.23463 5.49456 5.72796 5.75228 6.54017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.529 6.529 2 C -0.104 4.104 3 Si 0.709 3.291 4 C 0.051 3.949 5 C -0.768 4.768 6 S 2.718 3.282 7 O -0.926 6.926 8 O -0.943 6.943 9 N -1.099 6.099 10 C 0.118 3.882 11 H 0.105 0.895 12 C -0.141 4.141 13 C -0.074 4.074 14 H 0.103 0.897 15 C -0.066 4.066 16 C -0.106 4.106 17 C -0.107 4.107 18 C -0.039 4.039 19 Cl -0.070 7.070 20 C -0.107 4.107 21 C -0.103 4.103 22 C -0.137 4.137 23 S 0.214 5.786 24 C -0.163 4.163 25 C -0.164 4.164 26 H 0.388 0.612 27 H 0.084 0.916 28 H -0.249 1.249 29 H -0.245 1.245 30 H 0.423 0.577 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.180 0.820 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.154 1.982 -1.060 2.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.336 6.336 2 C -0.216 4.216 3 Si 0.608 3.392 4 C 0.035 3.965 5 C -0.967 4.967 6 S 2.801 3.199 7 O -0.916 6.916 8 O -0.933 6.933 9 N -0.860 5.860 10 C 0.010 3.990 11 H 0.123 0.877 12 C -0.180 4.180 13 C -0.093 4.093 14 H 0.121 0.879 15 C -0.067 4.067 16 C -0.124 4.124 17 C -0.126 4.126 18 C -0.066 4.066 19 Cl -0.041 7.041 20 C -0.126 4.126 21 C -0.121 4.121 22 C -0.177 4.177 23 S 0.480 5.520 24 C -0.300 4.300 25 C -0.194 4.194 26 H 0.237 0.763 27 H 0.102 0.898 28 H -0.174 1.174 29 H -0.170 1.170 30 H 0.259 0.741 31 H 0.102 0.898 32 H 0.118 0.882 33 H 0.151 0.849 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.119 0.881 38 H 0.101 0.899 39 H 0.197 0.803 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.880 1.094 -2.047 2.986 hybrid contribution -0.079 0.535 -0.417 0.683 sum 1.801 1.628 -2.464 3.459 Atomic orbital electron populations 1.86603 1.15102 1.82044 1.49823 1.24913 0.87580 1.12863 0.96241 0.94669 0.80917 0.76421 0.87203 1.17918 0.93360 0.90621 0.94643 1.35744 1.26101 1.14323 1.20551 1.01594 0.73871 0.71545 0.72867 1.93676 1.29400 1.83504 1.85001 1.93635 1.67699 1.85815 1.46162 1.55440 1.13575 1.33036 1.83910 1.21799 0.83231 0.96461 0.97544 0.87725 1.23611 1.02485 0.93906 0.98032 1.21587 0.99805 0.90724 0.97161 0.87906 1.19790 0.93614 0.94844 0.98421 1.20991 0.93653 0.97828 0.99889 1.21084 1.00641 0.91367 0.99479 1.21001 0.92708 0.88563 1.04282 1.98394 1.76700 1.35617 1.93408 1.21100 0.92109 0.99290 1.00112 1.21050 1.00252 0.91707 0.99104 1.23501 1.03779 0.94105 0.96268 1.84032 1.56346 1.05538 1.06044 1.26116 1.03600 0.97011 1.03316 1.20210 1.03980 1.01536 0.93634 0.76328 0.89768 1.17364 1.16976 0.74092 0.89786 0.88176 0.84889 0.84834 0.84863 0.85046 0.88078 0.89864 0.80293 0.83281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -1.00 12.25 -36.45 -0.45 -1.44 16 2 C -0.10 -0.16 2.32 36.01 0.08 -0.08 16 3 Si 0.71 -0.67 30.41 -169.99 -5.17 -5.84 16 4 C 0.05 0.15 5.17 -106.25 -0.55 -0.40 16 5 C -0.77 -1.73 6.46 29.04 0.19 -1.55 16 6 S 2.72 6.66 5.01 -107.50 -0.54 6.12 16 7 O -0.93 -4.89 17.41 -59.76 -1.04 -5.93 16 8 O -0.94 -4.37 17.28 -57.17 -0.99 -5.36 16 9 N -1.10 1.37 5.54 -4.08 -0.02 1.34 16 10 C 0.12 -0.27 3.62 -66.97 -0.24 -0.51 16 11 H 0.10 -0.27 7.84 -51.93 -0.41 -0.68 16 12 C -0.14 0.33 7.26 -25.78 -0.19 0.14 16 13 C -0.07 0.21 3.80 -90.96 -0.35 -0.13 16 14 H 0.10 -0.37 8.06 -51.93 -0.42 -0.79 16 15 C -0.07 0.10 5.29 -104.62 -0.55 -0.46 16 16 C -0.11 0.15 8.59 -39.59 -0.34 -0.19 16 17 C -0.11 0.03 9.83 -39.55 -0.39 -0.36 16 18 C -0.04 -0.03 6.32 -39.50 -0.25 -0.28 16 19 Cl -0.07 -0.10 28.96 -51.86 -1.50 -1.60 16 20 C -0.11 0.00 9.83 -39.55 -0.39 -0.39 16 21 C -0.10 0.10 9.71 -39.59 -0.38 -0.28 16 22 C -0.14 0.48 7.32 -25.92 -0.19 0.30 16 23 S 0.21 -0.12 22.08 -107.50 -2.37 -2.49 16 24 C -0.16 0.05 11.23 29.04 0.33 0.38 16 25 C -0.16 -0.25 8.74 -41.21 -0.36 -0.61 16 26 H 0.39 -1.31 8.74 45.56 0.40 -0.91 16 27 H 0.08 0.08 7.26 -51.93 -0.38 -0.30 16 28 H -0.25 -0.28 7.11 56.52 0.40 0.12 16 29 H -0.25 -0.26 6.87 56.52 0.39 0.12 16 30 H 0.42 -1.34 8.79 -34.46 -0.30 -1.65 16 31 H 0.08 -0.13 8.14 -51.93 -0.42 -0.56 16 32 H 0.10 -0.32 6.32 -51.93 -0.33 -0.65 16 33 H 0.13 -0.44 6.67 -52.49 -0.35 -0.79 16 34 H 0.13 -0.18 8.06 -52.49 -0.42 -0.61 16 35 H 0.13 -0.14 8.06 -52.48 -0.42 -0.57 16 36 H 0.13 -0.36 8.05 -52.48 -0.42 -0.78 16 37 H 0.10 -0.42 7.71 -51.93 -0.40 -0.82 16 38 H 0.08 -0.33 8.14 -51.93 -0.42 -0.75 16 39 H 0.18 -0.59 8.06 -52.48 -0.42 -1.01 16 40 H 0.15 0.07 5.57 -52.49 -0.29 -0.22 16 LS Contribution 373.89 15.07 5.63 5.63 Total: 0.00 -10.58 373.89 -14.25 -24.83 By element: Atomic # 1 Polarization: -6.62 SS G_CDS: -4.23 Total: -10.85 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -3.58 Total: -4.42 kcal Atomic # 7 Polarization: 1.37 SS G_CDS: -0.02 Total: 1.34 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: -2.47 Total: -12.73 kcal Atomic # 14 Polarization: -0.67 SS G_CDS: -5.17 Total: -5.84 kcal Atomic # 16 Polarization: 6.54 SS G_CDS: -2.91 Total: 3.63 kcal Atomic # 17 Polarization: -0.10 SS G_CDS: -1.50 Total: -1.60 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -10.58 -14.25 -24.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9610468_13652106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.494 kcal (2) G-P(sol) polarization free energy of solvation -10.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds