Wall clock time and date at job start Mon Mar 8 2021 14:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86309 * 109.46940 * 2 1 4 4 C 1.50701 * 109.47297 * 240.00480 * 2 1 3 5 5 C 1.33392 * 122.53568 * 284.99722 * 4 2 1 6 6 S 1.76201 * 125.20402 * 0.02562 * 5 4 2 7 7 O 1.42105 * 106.40343 * 66.17478 * 6 5 4 8 8 O 1.42107 * 106.40025 * 293.25730 * 6 5 4 9 9 N 1.65592 * 107.21939 * 179.71760 * 6 5 4 10 10 C 1.46506 * 119.99896 * 65.00038 * 9 6 5 11 11 H 1.08992 * 112.90684 * 346.24963 * 10 9 6 12 12 C 1.54049 * 113.61276 * 117.62051 * 10 9 6 13 13 C 1.53781 * 87.08031 * 89.07129 * 12 10 9 14 14 H 1.09003 * 113.69043 * 270.86777 * 13 12 10 15 15 C 1.50698 * 113.61565 * 139.97986 * 13 12 10 16 16 C 1.38243 * 119.98384 * 322.22213 * 15 13 12 17 17 C 1.38217 * 120.01374 * 179.77343 * 16 15 13 18 18 C 1.38351 * 119.98341 * 0.52657 * 17 16 15 19 19 Cl 1.73598 * 120.01461 * 179.70622 * 18 17 16 20 20 C 1.38354 * 119.97357 * 359.72951 * 18 17 16 21 21 C 1.38208 * 119.98857 * 359.97438 * 20 18 17 22 22 C 1.53781 * 87.08070 * 25.42738 * 13 12 10 23 23 S 1.75879 * 109.59378 * 179.74924 * 5 4 2 24 24 C 1.75887 * 90.96914 * 0.22832 * 23 5 4 25 25 C 1.33386 * 109.59358 * 0.02562 * 24 23 5 26 26 H 0.96706 * 113.99745 * 299.99821 * 1 2 3 27 27 H 1.08993 * 109.47729 * 119.99993 * 2 1 3 28 28 H 1.48501 * 109.99607 * 178.68155 * 3 2 1 29 29 H 1.48495 * 109.99757 * 300.00100 * 3 2 1 30 30 H 0.97000 * 119.99920 * 244.99697 * 9 6 5 31 31 H 1.09005 * 113.62125 * 334.52173 * 12 10 9 32 32 H 1.08996 * 113.68970 * 203.62749 * 12 10 9 33 33 H 1.08000 * 119.99143 * 0.02562 * 16 15 13 34 34 H 1.08000 * 120.00988 * 180.25717 * 17 16 15 35 35 H 1.08007 * 120.00839 * 179.97438 * 20 18 17 36 36 H 1.08003 * 119.99981 * 180.02562 * 21 20 18 37 37 H 1.09002 * 113.61445 * 89.11830 * 22 13 12 38 38 H 1.09002 * 113.61408 * 219.93560 * 22 13 12 39 39 H 1.08004 * 125.19788 * 179.97438 * 24 23 5 40 40 H 1.07998 * 122.53440 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 1.8961 -2.0377 -1.3573 6 16 1.2752 -3.1576 -0.1469 7 8 -0.1208 -2.9102 -0.0499 8 8 2.1577 -3.0775 0.9640 9 7 1.4375 -4.6857 -0.7638 10 6 2.7717 -5.2352 -1.0178 11 1 3.5547 -4.4776 -0.9908 12 6 3.0928 -6.4877 -0.1803 13 6 2.4761 -7.3129 -1.3220 14 1 1.4028 -7.4720 -1.2172 15 6 3.2291 -8.5828 -1.6240 16 6 4.6101 -8.5982 -1.5637 17 6 5.3011 -9.7638 -1.8360 18 6 4.6109 -10.9126 -2.1796 19 17 5.4784 -12.3751 -2.5291 20 6 3.2290 -10.8952 -2.2449 21 6 2.5389 -9.7306 -1.9665 22 6 2.8375 -6.1455 -2.2555 23 16 2.5571 -2.4987 -2.9206 24 6 2.8591 -0.8134 -3.3233 25 6 2.4678 -0.0351 -2.3132 26 1 -0.3933 0.4417 0.7651 27 1 1.7924 -0.5138 0.8899 28 1 3.5345 1.7703 0.0321 29 1 1.5614 2.4679 -1.2085 30 1 0.6493 -5.2170 -0.9570 31 1 2.5316 -6.5451 0.7524 32 1 4.1601 -6.6612 -0.0434 33 1 5.1489 -7.7001 -1.2998 34 1 6.3798 -9.7767 -1.7848 35 1 2.6897 -11.7916 -2.5135 36 1 1.4601 -9.7170 -2.0170 37 1 3.8354 -6.2243 -2.6870 38 1 2.0709 -5.9276 -2.9991 39 1 3.2955 -0.4625 -4.2468 40 1 2.5581 1.0408 -2.3402 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_9610468_13652106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:43:40 Heat of formation + Delta-G solvation = -13.304024 kcal Electronic energy + Delta-G solvation = -28287.477573 eV Core-core repulsion = 24121.626183 eV Total energy + Delta-G solvation = -4165.851390 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.025 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.26451 -40.02310 -39.37358 -38.36302 -37.38355 -37.28148 -37.05589 -34.35647 -32.05498 -31.61516 -31.26142 -28.17988 -26.64757 -26.05214 -24.28540 -23.87518 -22.71239 -21.84109 -20.57161 -19.83328 -19.73219 -18.63876 -18.46225 -18.04687 -17.42958 -17.22028 -16.67182 -16.37733 -16.28661 -16.01863 -15.61234 -15.38429 -14.97937 -14.71279 -14.64609 -14.49269 -14.38462 -14.28520 -14.02655 -13.81900 -13.78791 -13.40896 -13.36987 -13.27818 -12.89964 -12.76041 -12.61932 -12.57552 -12.54270 -12.32109 -11.95278 -11.89927 -11.68831 -11.66289 -11.23306 -10.64621 -10.54147 -10.47855 -9.99747 -9.71624 -9.48046 -5.02450 -0.85975 -0.77778 0.13060 0.14683 0.33528 0.51215 1.07394 1.14144 1.17686 1.61258 1.79874 1.84849 2.43486 2.60889 3.18958 3.39332 3.47614 3.63786 3.66388 3.73781 3.80368 3.84333 3.90455 3.96091 3.97764 4.03731 4.17582 4.21123 4.37477 4.43832 4.52194 4.66039 4.75964 4.76491 4.82859 4.88102 4.92049 4.99005 5.07557 5.10745 5.25536 5.29070 5.42111 5.63713 5.85510 5.91956 6.72910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.129 4.129 3 Si 0.803 3.197 4 C 0.026 3.974 5 C -0.795 4.795 6 S 2.731 3.269 7 O -0.962 6.962 8 O -0.973 6.973 9 N -1.088 6.088 10 C 0.108 3.892 11 H 0.109 0.891 12 C -0.145 4.145 13 C -0.072 4.072 14 H 0.111 0.889 15 C -0.066 4.066 16 C -0.107 4.107 17 C -0.117 4.117 18 C -0.057 4.057 19 Cl -0.084 7.084 20 C -0.119 4.119 21 C -0.109 4.109 22 C -0.129 4.129 23 S 0.261 5.739 24 C -0.157 4.157 25 C -0.190 4.190 26 H 0.406 0.594 27 H 0.081 0.919 28 H -0.278 1.278 29 H -0.272 1.272 30 H 0.433 0.567 31 H 0.074 0.926 32 H 0.110 0.890 33 H 0.153 0.847 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.148 0.852 37 H 0.113 0.887 38 H 0.092 0.908 39 H 0.211 0.789 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.478 2.418 -2.081 3.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.361 6.361 2 C -0.239 4.239 3 Si 0.703 3.297 4 C 0.009 3.991 5 C -0.995 4.995 6 S 2.816 3.184 7 O -0.952 6.952 8 O -0.963 6.963 9 N -0.851 5.851 10 C 0.001 3.999 11 H 0.127 0.873 12 C -0.184 4.184 13 C -0.090 4.090 14 H 0.129 0.871 15 C -0.066 4.066 16 C -0.124 4.124 17 C -0.136 4.136 18 C -0.083 4.083 19 Cl -0.056 7.056 20 C -0.138 4.138 21 C -0.127 4.127 22 C -0.168 4.168 23 S 0.527 5.473 24 C -0.295 4.295 25 C -0.219 4.219 26 H 0.258 0.742 27 H 0.099 0.901 28 H -0.204 1.204 29 H -0.198 1.198 30 H 0.271 0.729 31 H 0.093 0.907 32 H 0.128 0.872 33 H 0.171 0.829 34 H 0.158 0.842 35 H 0.155 0.845 36 H 0.165 0.835 37 H 0.131 0.869 38 H 0.110 0.890 39 H 0.228 0.772 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 2.169 1.494 -3.033 4.017 hybrid contribution -0.159 0.351 -0.157 0.416 sum 2.009 1.846 -3.190 4.197 Atomic orbital electron populations 1.86548 1.15552 1.82722 1.51234 1.25349 0.87496 1.15095 0.95953 0.93601 0.77744 0.73110 0.85203 1.18306 0.93948 0.91264 0.95623 1.35694 1.27405 1.14288 1.22159 1.00818 0.72697 0.72060 0.72781 1.93620 1.31378 1.84439 1.85776 1.93589 1.68064 1.86520 1.48124 1.55131 1.14683 1.31670 1.83645 1.22000 0.82539 0.96764 0.98646 0.87347 1.23676 1.03056 0.93899 0.97777 1.21621 1.00122 0.90168 0.97078 0.87057 1.19978 0.93747 0.95199 0.97698 1.21242 0.93890 0.98101 0.99214 1.21269 1.01185 0.91504 0.99630 1.21181 0.93126 0.88457 1.05564 1.98381 1.77028 1.36558 1.93606 1.21257 0.92008 1.00022 1.00510 1.21295 1.01166 0.91465 0.98734 1.23511 1.04792 0.92717 0.95756 1.83753 1.54808 1.04960 1.03749 1.26598 1.01977 0.97121 1.03788 1.20344 1.05393 1.02091 0.94103 0.74246 0.90099 1.20411 1.19804 0.72902 0.90730 0.87225 0.82928 0.84206 0.84480 0.83470 0.86879 0.88958 0.77250 0.82900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.81 12.25 -147.81 -1.81 -4.63 16 2 C -0.13 -0.56 2.32 71.24 0.17 -0.39 16 3 Si 0.80 -1.12 30.41 68.60 2.09 0.97 16 4 C 0.03 0.17 5.17 -20.92 -0.11 0.06 16 5 C -0.79 -3.97 6.46 66.72 0.43 -3.54 16 6 S 2.73 16.25 5.01 -56.49 -0.28 15.96 16 7 O -0.96 -11.70 17.41 -125.53 -2.19 -13.89 16 8 O -0.97 -10.47 17.28 -128.00 -2.21 -12.68 16 9 N -1.09 2.80 5.54 -166.81 -0.92 1.88 16 10 C 0.11 -0.59 3.62 45.61 0.16 -0.42 16 11 H 0.11 -0.65 7.84 -2.39 -0.02 -0.67 16 12 C -0.14 0.80 7.26 31.21 0.23 1.03 16 13 C -0.07 0.51 3.80 -11.01 -0.04 0.47 16 14 H 0.11 -0.97 8.06 -2.39 -0.02 -0.99 16 15 C -0.07 0.27 5.29 -19.86 -0.11 0.16 16 16 C -0.11 0.41 8.59 22.27 0.19 0.60 16 17 C -0.12 0.08 9.83 22.29 0.22 0.30 16 18 C -0.06 -0.11 6.32 22.32 0.14 0.03 16 19 Cl -0.08 -0.31 28.96 -2.72 -0.08 -0.38 16 20 C -0.12 -0.01 9.83 22.29 0.22 0.21 16 21 C -0.11 0.29 9.71 22.26 0.22 0.51 16 22 C -0.13 1.15 7.32 31.12 0.23 1.37 16 23 S 0.26 -0.58 22.08 -56.49 -1.25 -1.82 16 24 C -0.16 0.28 11.23 66.72 0.75 1.03 16 25 C -0.19 -0.58 8.74 21.21 0.19 -0.40 16 26 H 0.41 -2.26 8.74 -74.05 -0.65 -2.90 16 27 H 0.08 0.31 7.26 -2.39 -0.02 0.29 16 28 H -0.28 -0.82 7.11 99.48 0.71 -0.11 16 29 H -0.27 -0.72 6.87 99.48 0.68 -0.04 16 30 H 0.43 -2.86 8.79 -96.75 -0.85 -3.71 16 31 H 0.07 -0.25 8.14 -2.38 -0.02 -0.27 16 32 H 0.11 -0.83 6.32 -2.39 -0.02 -0.84 16 33 H 0.15 -1.28 6.67 -2.91 -0.02 -1.30 16 34 H 0.14 -0.38 8.06 -2.91 -0.02 -0.41 16 35 H 0.14 -0.22 8.06 -2.91 -0.02 -0.25 16 36 H 0.15 -0.96 8.05 -2.91 -0.02 -0.99 16 37 H 0.11 -1.22 7.71 -2.39 -0.02 -1.24 16 38 H 0.09 -0.94 8.14 -2.39 -0.02 -0.96 16 39 H 0.21 -1.88 8.06 -2.91 -0.02 -1.91 16 40 H 0.15 0.19 5.57 -2.91 -0.02 0.17 16 Total: 0.00 -25.55 373.89 -4.14 -29.69 By element: Atomic # 1 Polarization: -15.76 SS G_CDS: -0.36 Total: -16.12 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: 2.88 Total: 1.02 kcal Atomic # 7 Polarization: 2.80 SS G_CDS: -0.92 Total: 1.88 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -6.21 Total: -31.19 kcal Atomic # 14 Polarization: -1.12 SS G_CDS: 2.09 Total: 0.97 kcal Atomic # 16 Polarization: 15.67 SS G_CDS: -1.53 Total: 14.14 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -0.08 Total: -0.38 kcal Total: -25.55 -4.14 -29.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9610468_13652106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.389 kcal (2) G-P(sol) polarization free energy of solvation -25.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds