Wall clock time and date at job start Mon Mar 8 2021 14:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86299 * 109.47135 * 2 1 4 4 C 1.50706 * 109.47086 * 119.99584 * 2 1 3 5 5 C 1.33388 * 125.19909 * 39.28782 * 4 2 1 6 6 S 1.76200 * 122.54085 * 359.97438 * 5 4 2 7 7 O 1.42092 * 106.40340 * 278.78739 * 6 5 4 8 8 O 1.42102 * 106.40236 * 51.70790 * 6 5 4 9 9 N 1.65606 * 107.21813 * 165.24834 * 6 5 4 10 10 C 1.46497 * 120.00012 * 66.22492 * 9 6 5 11 11 H 1.09000 * 112.84968 * 346.87388 * 10 9 6 12 12 C 1.53774 * 113.61290 * 118.18532 * 10 9 6 13 13 C 1.53778 * 87.08398 * 89.11609 * 12 10 9 14 14 H 1.08995 * 113.61366 * 270.88213 * 13 12 10 15 15 C 1.50704 * 113.69101 * 139.99209 * 13 12 10 16 16 C 1.38241 * 119.98432 * 322.18780 * 15 13 12 17 17 C 1.38219 * 120.00964 * 179.77139 * 16 15 13 18 18 C 1.38355 * 119.98693 * 0.48183 * 17 16 15 19 19 Cl 1.73595 * 120.01519 * 179.75089 * 18 17 16 20 20 C 1.38357 * 119.97049 * 359.76922 * 18 17 16 21 21 C 1.38214 * 119.99092 * 0.02562 * 20 18 17 22 22 C 1.53780 * 87.08188 * 25.43201 * 13 12 10 23 23 C 1.38428 * 114.91903 * 179.97438 * 5 4 2 24 24 C 1.33384 * 114.92120 * 359.97438 * 23 5 4 25 25 S 1.75876 * 125.20330 * 218.98161 * 4 2 1 26 26 H 0.96706 * 113.99883 * 295.98010 * 1 2 3 27 27 H 1.08992 * 109.47190 * 239.99885 * 2 1 3 28 28 H 1.48503 * 109.99848 * 299.99752 * 3 2 1 29 29 H 1.48497 * 110.00344 * 61.31882 * 3 2 1 30 30 H 0.97001 * 119.99827 * 246.22558 * 9 6 5 31 31 H 1.09007 * 113.61406 * 203.66669 * 12 10 9 32 32 H 1.09004 * 113.61847 * 334.56210 * 12 10 9 33 33 H 1.07996 * 119.99342 * 0.02562 * 16 15 13 34 34 H 1.07998 * 120.00874 * 180.25923 * 17 16 15 35 35 H 1.08002 * 120.00290 * 180.02562 * 20 18 17 36 36 H 1.07995 * 119.99345 * 180.02562 * 21 20 18 37 37 H 1.08997 * 113.61204 * 220.01967 * 22 13 12 38 38 H 1.09001 * 113.61385 * 89.11670 * 22 13 12 39 39 H 1.08001 * 122.53400 * 179.97438 * 23 5 4 40 40 H 1.07998 * 125.20700 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7103 1.2306 5 6 1.3923 -1.8111 1.7569 6 16 -0.0206 -2.6007 1.0604 7 8 -1.1528 -1.8754 1.5197 8 8 0.2689 -2.7994 -0.3166 9 7 -0.1240 -4.1079 1.7387 10 6 -0.4107 -4.2495 3.1684 11 1 -0.3101 -3.3120 3.7152 12 6 -1.7209 -4.9989 3.4625 13 6 -0.8921 -6.2941 3.4461 14 1 -0.8104 -6.7476 2.4583 15 6 -1.2907 -7.2817 4.5123 16 6 -1.6568 -6.8330 5.7676 17 6 -2.0270 -7.7380 6.7444 18 6 -2.0217 -9.0938 6.4688 19 17 -2.4803 -10.2315 7.6971 20 6 -1.6502 -9.5425 5.2138 21 6 -1.2842 -8.6363 4.2365 22 6 0.3208 -5.4298 3.8294 23 6 2.0269 -2.2861 2.8917 24 6 3.0816 -1.5714 3.2866 25 16 3.3225 -0.2191 2.1879 26 1 -0.3933 0.3870 0.7942 27 1 1.7923 -0.5138 -0.8899 28 1 1.5615 2.4678 -1.2086 29 1 1.5879 2.4586 1.2242 30 1 0.0053 -4.8969 1.1895 31 1 -2.1477 -4.7659 4.4382 32 1 -2.4503 -4.9369 2.6548 33 1 -1.6574 -5.7749 5.9837 34 1 -2.3170 -7.3872 7.7238 35 1 -1.6462 -10.6007 4.9979 36 1 -0.9947 -8.9864 3.2567 37 1 1.2397 -5.7157 3.3178 38 1 0.4523 -5.3147 4.9053 39 1 1.6932 -3.1685 3.4175 40 1 3.6960 -1.7915 4.1471 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_9610468_14772022.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:43:44 Heat of formation + Delta-G solvation = -15.005814 kcal Electronic energy + Delta-G solvation = -28503.725760 eV Core-core repulsion = 24337.800575 eV Total energy + Delta-G solvation = -4165.925185 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.025 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.26080 -39.75144 -39.38391 -38.22079 -37.82037 -37.36549 -36.85786 -34.26243 -32.04710 -31.82253 -31.22460 -27.59670 -26.63971 -26.04822 -24.48834 -23.86361 -22.65301 -21.69853 -20.72069 -20.08073 -19.47585 -18.55758 -18.24504 -17.80201 -17.17783 -17.08192 -16.68553 -16.60214 -16.30927 -16.00363 -15.61242 -15.38969 -15.31672 -14.79672 -14.62225 -14.35598 -14.20349 -14.13752 -13.98444 -13.91399 -13.64388 -13.37964 -13.23541 -13.12275 -12.90263 -12.81680 -12.60625 -12.54535 -12.53291 -12.29713 -11.92889 -11.70360 -11.66779 -11.56238 -11.20545 -11.14858 -10.52090 -10.10416 -9.99062 -9.71016 -9.46993 -5.20074 -0.74713 -0.50436 0.14714 0.34131 0.37698 0.67881 1.03426 1.17937 1.18330 1.48563 1.80333 1.94251 2.61600 2.66585 2.97930 3.27486 3.45514 3.54177 3.67627 3.70187 3.86536 3.96661 4.00279 4.03783 4.14598 4.18653 4.23860 4.35281 4.38488 4.45499 4.66632 4.71099 4.77576 4.85577 4.91049 4.94965 5.01960 5.10256 5.13128 5.16437 5.26779 5.29820 5.46116 5.65265 5.86505 6.00782 6.09347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.096 4.096 3 Si 0.765 3.235 4 C -0.126 4.126 5 C -0.674 4.674 6 S 2.729 3.271 7 O -0.978 6.978 8 O -0.984 6.984 9 N -1.091 6.091 10 C 0.113 3.887 11 H 0.115 0.885 12 C -0.149 4.149 13 C -0.073 4.073 14 H 0.108 0.892 15 C -0.066 4.066 16 C -0.106 4.106 17 C -0.117 4.117 18 C -0.057 4.057 19 Cl -0.085 7.085 20 C -0.120 4.120 21 C -0.110 4.110 22 C -0.129 4.129 23 C -0.100 4.100 24 C -0.205 4.205 25 S 0.195 5.805 26 H 0.394 0.606 27 H 0.148 0.852 28 H -0.266 1.266 29 H -0.259 1.259 30 H 0.428 0.572 31 H 0.109 0.891 32 H 0.069 0.931 33 H 0.154 0.846 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.147 0.853 37 H 0.093 0.907 38 H 0.114 0.886 39 H 0.176 0.824 40 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.865 0.554 3.681 7.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.204 4.204 3 Si 0.663 3.337 4 C -0.247 4.247 5 C -0.775 4.775 6 S 2.816 3.184 7 O -0.968 6.968 8 O -0.974 6.974 9 N -0.853 5.853 10 C 0.006 3.994 11 H 0.133 0.867 12 C -0.189 4.189 13 C -0.092 4.092 14 H 0.126 0.874 15 C -0.066 4.066 16 C -0.124 4.124 17 C -0.136 4.136 18 C -0.084 4.084 19 Cl -0.056 7.056 20 C -0.138 4.138 21 C -0.128 4.128 22 C -0.168 4.168 23 C -0.128 4.128 24 C -0.341 4.341 25 S 0.459 5.541 26 H 0.245 0.755 27 H 0.165 0.835 28 H -0.192 1.192 29 H -0.183 1.183 30 H 0.266 0.734 31 H 0.127 0.873 32 H 0.088 0.912 33 H 0.172 0.828 34 H 0.158 0.842 35 H 0.155 0.845 36 H 0.164 0.836 37 H 0.112 0.888 38 H 0.132 0.868 39 H 0.193 0.807 40 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 7.194 2.718 2.673 8.141 hybrid contribution -1.803 -2.090 0.802 2.874 sum 5.391 0.628 3.475 6.444 Atomic orbital electron populations 1.86655 1.17852 1.83608 1.47497 1.25494 0.83734 1.13994 0.97223 0.94442 0.88869 0.70393 0.80009 1.25044 1.01006 0.97973 1.00681 1.29741 1.25942 1.10274 1.11591 1.00792 0.73273 0.72300 0.71998 1.93539 1.48707 1.72141 1.82404 1.93543 1.85832 1.85532 1.32480 1.55166 1.87385 1.24616 1.18118 1.21924 0.97446 1.00588 0.79482 0.86698 1.23654 0.96749 0.94671 1.03785 1.21621 0.97346 0.92701 0.97504 0.87370 1.19998 0.97644 0.94013 0.94961 1.21244 0.98399 1.00720 0.92036 1.21277 1.00266 0.90811 1.01233 1.21182 1.04957 0.91147 0.91082 1.98381 1.91116 1.61305 1.54790 1.21256 0.99586 1.01377 0.91613 1.21296 0.99237 0.92508 0.99742 1.23535 0.97478 0.93055 1.02729 1.20027 0.95969 1.02276 0.94513 1.26351 1.03175 0.99252 1.05301 1.84136 1.24319 1.27470 1.18145 0.75461 0.83495 1.19152 1.18342 0.73436 0.87309 0.91217 0.82820 0.84184 0.84533 0.83566 0.88808 0.86788 0.80730 0.77866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -4.11 9.82 -125.27 -1.23 -5.34 16 2 C -0.10 -0.26 2.36 71.24 0.17 -0.09 16 3 Si 0.77 -1.16 31.25 68.60 2.14 0.99 16 4 C -0.13 -0.16 5.70 24.59 0.14 -0.02 16 5 C -0.67 -0.83 5.72 21.22 0.12 -0.71 16 6 S 2.73 12.63 4.16 -56.49 -0.24 12.40 16 7 O -0.98 -9.66 16.33 -120.63 -1.97 -11.63 16 8 O -0.98 -11.52 17.05 -123.07 -2.10 -13.62 16 9 N -1.09 3.95 5.50 -167.20 -0.92 3.03 16 10 C 0.11 -0.79 2.78 45.52 0.13 -0.66 16 11 H 0.12 -0.97 7.12 -2.39 -0.02 -0.99 16 12 C -0.15 0.87 7.25 31.12 0.23 1.10 16 13 C -0.07 0.55 3.79 -11.01 -0.04 0.51 16 14 H 0.11 -0.93 8.05 -2.39 -0.02 -0.95 16 15 C -0.07 0.28 5.29 -19.86 -0.11 0.18 16 16 C -0.11 0.44 8.60 22.27 0.19 0.63 16 17 C -0.12 0.11 9.83 22.29 0.22 0.32 16 18 C -0.06 -0.10 6.32 22.33 0.14 0.04 16 19 Cl -0.08 -0.30 28.96 -2.72 -0.08 -0.38 16 20 C -0.12 -0.01 9.83 22.29 0.22 0.21 16 21 C -0.11 0.30 9.71 22.27 0.22 0.51 16 22 C -0.13 1.35 6.87 31.12 0.21 1.56 16 23 C -0.10 0.43 9.21 21.22 0.20 0.63 16 24 C -0.21 1.28 11.23 66.72 0.75 2.03 16 25 S 0.19 -0.85 20.87 -56.49 -1.18 -2.03 16 26 H 0.39 1.21 8.23 -74.05 -0.61 0.60 16 27 H 0.15 0.28 7.96 -2.39 -0.02 0.27 16 28 H -0.27 -1.15 7.11 99.48 0.71 -0.44 16 29 H -0.26 -0.31 7.11 99.48 0.71 0.40 16 30 H 0.43 -2.93 8.77 -96.74 -0.85 -3.78 16 31 H 0.11 -0.86 6.33 -2.38 -0.02 -0.87 16 32 H 0.07 -0.19 8.14 -2.38 -0.02 -0.21 16 33 H 0.15 -1.38 6.68 -2.91 -0.02 -1.40 16 34 H 0.14 -0.42 8.06 -2.91 -0.02 -0.45 16 35 H 0.14 -0.22 8.06 -2.91 -0.02 -0.24 16 36 H 0.15 -0.94 8.05 -2.91 -0.02 -0.96 16 37 H 0.09 -1.11 8.14 -2.39 -0.02 -1.13 16 38 H 0.11 -1.44 7.71 -2.39 -0.02 -1.46 16 39 H 0.18 -1.71 5.27 -2.91 -0.02 -1.73 16 40 H 0.20 -2.51 8.06 -2.91 -0.02 -2.54 16 Total: 0.00 -23.13 367.29 -3.09 -26.22 By element: Atomic # 1 Polarization: -15.59 SS G_CDS: -0.30 Total: -15.89 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: 2.78 Total: 6.25 kcal Atomic # 7 Polarization: 3.95 SS G_CDS: -0.92 Total: 3.03 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -5.30 Total: -30.59 kcal Atomic # 14 Polarization: -1.16 SS G_CDS: 2.14 Total: 0.99 kcal Atomic # 16 Polarization: 11.79 SS G_CDS: -1.41 Total: 10.37 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -0.08 Total: -0.38 kcal Total: -23.13 -3.09 -26.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9610468_14772022.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.214 kcal (2) G-P(sol) polarization free energy of solvation -23.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds