Wall clock time and date at job start Mon Mar 8 2021 14:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86301 * 109.46992 * 2 1 4 4 C 1.50705 * 109.47285 * 240.00275 * 2 1 3 5 5 C 1.33384 * 125.20012 * 300.00077 * 4 2 1 6 6 C 1.38424 * 114.91912 * 179.74894 * 5 4 2 7 7 S 1.76201 * 122.54035 * 180.27045 * 6 5 4 8 8 O 1.42104 * 106.40242 * 23.72878 * 7 6 5 9 9 O 1.42103 * 106.40508 * 156.65202 * 7 6 5 10 10 N 1.65608 * 107.21846 * 270.19281 * 7 6 5 11 11 C 1.46496 * 119.99853 * 64.99774 * 10 7 6 12 12 H 1.09000 * 112.85287 * 15.33676 * 11 10 7 13 13 C 1.53778 * 113.61359 * 146.53353 * 11 10 7 14 14 C 1.53777 * 87.08541 * 89.11114 * 13 11 10 15 15 H 1.08999 * 113.61848 * 270.80551 * 14 13 11 16 16 C 1.50702 * 113.61530 * 139.97942 * 14 13 11 17 17 C 1.38247 * 119.98492 * 299.73415 * 16 14 13 18 18 C 1.38219 * 120.00725 * 179.72527 * 17 16 14 19 19 C 1.38344 * 119.99042 * 0.54497 * 18 17 16 20 20 Cl 1.73596 * 120.01663 * 179.74782 * 19 18 17 21 21 C 1.38359 * 119.97145 * 359.72899 * 19 18 17 22 22 C 1.38210 * 119.98908 * 359.97438 * 21 19 18 23 23 C 1.53782 * 113.61450 * 244.13786 * 11 10 7 24 24 C 1.33386 * 114.92331 * 0.42700 * 6 5 4 25 25 S 1.75886 * 125.20294 * 119.96782 * 4 2 1 26 26 H 0.96701 * 113.99793 * 299.99727 * 1 2 3 27 27 H 1.08997 * 109.47451 * 119.99990 * 2 1 3 28 28 H 1.48496 * 110.00260 * 178.68583 * 3 2 1 29 29 H 1.48508 * 109.99936 * 300.00229 * 3 2 1 30 30 H 1.07997 * 122.54195 * 359.97023 * 5 4 2 31 31 H 0.96997 * 119.99802 * 245.00434 * 10 7 6 32 32 H 1.08997 * 113.61725 * 203.66330 * 13 11 10 33 33 H 1.09008 * 113.61571 * 334.56521 * 13 11 10 34 34 H 1.07998 * 119.99570 * 359.97438 * 17 16 14 35 35 H 1.08004 * 119.99933 * 180.27078 * 18 17 16 36 36 H 1.08003 * 120.00509 * 180.02562 * 21 19 18 37 37 H 1.07996 * 119.99922 * 180.02562 * 22 21 19 38 38 H 1.09007 * 113.61270 * 25.43250 * 23 11 10 39 39 H 1.08997 * 113.61577 * 156.34054 * 23 11 10 40 40 H 1.08002 * 125.20849 * 179.86592 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6738 -1.9811 -1.5437 6 6 2.2399 -2.4156 -2.7299 7 16 2.0233 -4.0548 -3.3388 8 8 0.8226 -4.5437 -2.7567 9 8 2.2378 -3.9933 -4.7422 10 7 3.2523 -4.9748 -2.7178 11 6 3.3372 -5.2050 -1.2735 12 1 2.4141 -4.9558 -0.7501 13 6 3.9023 -6.5861 -0.9020 14 6 5.2962 -5.9374 -0.9344 15 1 5.7692 -5.9676 -1.9160 16 6 6.2075 -6.4094 0.1691 17 6 5.8518 -6.2129 1.4905 18 6 6.6846 -6.6506 2.5030 19 6 7.8796 -7.2755 2.1939 20 17 8.9292 -7.8197 3.4651 21 6 8.2377 -7.4668 0.8712 22 6 7.4013 -7.0342 -0.1404 23 6 4.5946 -4.6009 -0.6262 24 6 2.9643 -1.5004 -3.3754 25 16 2.9462 0.0096 -2.4736 26 1 -0.3933 0.4417 0.7651 27 1 1.7923 -0.5138 0.8899 28 1 3.5345 1.7704 0.0320 29 1 1.5613 2.4679 -1.2085 30 1 1.0667 -2.6213 -0.9210 31 1 3.9160 -5.3612 -3.3103 32 1 3.6029 -6.9284 0.0886 33 1 3.7539 -7.3408 -1.6744 34 1 4.9212 -5.7208 1.7316 35 1 6.4045 -6.5009 3.5353 36 1 9.1703 -7.9549 0.6293 37 1 7.6804 -7.1838 -1.1729 38 1 5.0048 -3.7539 -1.1763 39 1 4.4841 -4.4015 0.4396 40 1 3.4794 -1.6606 -4.3111 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_9610468_15065232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:43:48 Heat of formation + Delta-G solvation = -18.840354 kcal Electronic energy + Delta-G solvation = -28098.014073 eV Core-core repulsion = 23931.922610 eV Total energy + Delta-G solvation = -4166.091463 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.025 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.22390 -39.47918 -39.30913 -38.42744 -37.52672 -37.37500 -37.08020 -34.22880 -32.05222 -32.01310 -31.23238 -27.25741 -26.62655 -25.98621 -24.89786 -23.86738 -22.64374 -21.30270 -20.63344 -20.02228 -19.19936 -18.68147 -18.40952 -18.13348 -17.82558 -16.99391 -16.66397 -16.35603 -16.32059 -15.94296 -15.50690 -15.38117 -14.89719 -14.61169 -14.51123 -14.38153 -14.31117 -14.23037 -14.11683 -13.94103 -13.73888 -13.39483 -13.35519 -13.27415 -12.97306 -12.87703 -12.64681 -12.57913 -12.51920 -12.21126 -11.93861 -11.92028 -11.67374 -11.61184 -11.16758 -10.61630 -10.47243 -10.17246 -9.99571 -9.93080 -9.47337 -5.25110 -0.85487 -0.56287 0.14384 0.26135 0.33656 0.51687 0.90778 1.17942 1.18256 1.53374 1.85289 1.98905 2.61157 2.62916 3.13344 3.39292 3.50476 3.67863 3.69358 3.72246 3.87325 3.87796 3.96211 3.99917 4.08654 4.21181 4.27488 4.37897 4.41726 4.44637 4.57330 4.71871 4.76948 4.82225 4.85677 4.95058 5.00464 5.02288 5.10885 5.12462 5.26459 5.29335 5.46119 5.65256 5.86129 6.02591 6.83664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.562 6.562 2 C -0.041 4.041 3 Si 0.750 3.250 4 C -0.194 4.194 5 C -0.048 4.048 6 C -0.687 4.687 7 S 2.732 3.268 8 O -0.978 6.978 9 O -0.984 6.984 10 N -1.083 6.083 11 C 0.117 3.883 12 H 0.113 0.887 13 C -0.130 4.130 14 C -0.072 4.072 15 H 0.110 0.890 16 C -0.066 4.066 17 C -0.106 4.106 18 C -0.117 4.117 19 C -0.057 4.057 20 Cl -0.085 7.085 21 C -0.120 4.120 22 C -0.110 4.110 23 C -0.144 4.144 24 C -0.077 4.077 25 S 0.115 5.885 26 H 0.407 0.593 27 H 0.116 0.884 28 H -0.264 1.264 29 H -0.285 1.285 30 H 0.164 0.836 31 H 0.430 0.570 32 H 0.106 0.894 33 H 0.082 0.918 34 H 0.154 0.846 35 H 0.141 0.859 36 H 0.136 0.864 37 H 0.146 0.854 38 H 0.078 0.922 39 H 0.109 0.891 40 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.703 2.785 4.857 5.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.373 6.373 2 C -0.154 4.154 3 Si 0.653 3.347 4 C -0.311 4.311 5 C -0.076 4.076 6 C -0.787 4.787 7 S 2.819 3.181 8 O -0.968 6.968 9 O -0.974 6.974 10 N -0.845 5.845 11 C 0.009 3.991 12 H 0.131 0.869 13 C -0.169 4.169 14 C -0.091 4.091 15 H 0.128 0.872 16 C -0.066 4.066 17 C -0.124 4.124 18 C -0.136 4.136 19 C -0.083 4.083 20 Cl -0.056 7.056 21 C -0.139 4.139 22 C -0.128 4.128 23 C -0.183 4.183 24 C -0.216 4.216 25 S 0.378 5.622 26 H 0.259 0.741 27 H 0.133 0.867 28 H -0.190 1.190 29 H -0.211 1.211 30 H 0.182 0.818 31 H 0.268 0.732 32 H 0.124 0.876 33 H 0.101 0.899 34 H 0.172 0.828 35 H 0.159 0.841 36 H 0.154 0.846 37 H 0.164 0.836 38 H 0.097 0.903 39 H 0.127 0.873 40 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 2.195 4.277 3.364 5.868 hybrid contribution 0.367 -1.454 0.143 1.506 sum 2.563 2.823 3.506 5.180 Atomic orbital electron populations 1.86475 1.16752 1.82415 1.51669 1.24140 0.86133 1.09966 0.95118 0.93853 0.79035 0.75959 0.85804 1.24051 1.07399 0.97693 1.01990 1.19721 0.97899 0.95431 0.94591 1.29987 1.14536 1.25724 1.08439 1.00732 0.72862 0.72583 0.71892 1.93576 1.45049 1.78915 1.79244 1.93575 1.86032 1.87300 1.30504 1.55035 1.47915 1.66216 1.15320 1.21844 0.99939 0.98386 0.78932 0.86928 1.23424 0.93721 0.95920 1.03824 1.21685 0.93506 0.96650 0.97224 0.87174 1.20012 0.94852 0.97053 0.94719 1.21249 1.00282 0.99428 0.91418 1.21279 0.92752 0.98190 1.01363 1.21176 0.94140 1.03386 0.89644 1.98381 1.66503 1.88848 1.51854 1.21256 1.01171 1.00695 0.90780 1.21293 0.93766 0.97922 0.99852 1.23702 0.95192 0.96736 1.02667 1.26156 0.98001 0.95039 1.02381 1.84612 1.47722 1.14633 1.15206 0.74054 0.86655 1.18968 1.21126 0.81814 0.73239 0.87569 0.89927 0.82822 0.84146 0.84574 0.83604 0.90291 0.87301 0.77900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.27 12.83 -148.98 -1.91 -0.64 16 2 C -0.04 0.14 2.95 71.24 0.21 0.35 16 3 Si 0.75 -3.07 30.97 68.60 2.12 -0.95 16 4 C -0.19 -0.37 5.76 24.59 0.14 -0.23 16 5 C -0.05 -0.10 9.56 21.22 0.20 0.11 16 6 C -0.69 -1.10 5.86 21.22 0.12 -0.98 16 7 S 2.73 5.96 5.77 -56.49 -0.33 5.63 16 8 O -0.98 -8.48 17.15 -128.00 -2.19 -10.68 16 9 O -0.98 -7.74 17.64 -128.00 -2.26 -10.00 16 10 N -1.08 5.73 5.73 -167.20 -0.96 4.77 16 11 C 0.12 -0.82 4.50 45.52 0.20 -0.62 16 12 H 0.11 -0.82 7.76 -2.39 -0.02 -0.84 16 13 C -0.13 1.02 7.33 31.12 0.23 1.25 16 14 C -0.07 0.58 3.81 -10.92 -0.04 0.54 16 15 H 0.11 -1.06 8.08 -2.39 -0.02 -1.08 16 16 C -0.07 0.30 5.29 -19.86 -0.11 0.20 16 17 C -0.11 0.47 8.62 22.27 0.19 0.66 16 18 C -0.12 0.14 9.83 22.29 0.22 0.36 16 19 C -0.06 -0.09 6.32 22.32 0.14 0.05 16 20 Cl -0.08 -0.28 28.96 -2.72 -0.08 -0.36 16 21 C -0.12 0.01 9.83 22.29 0.22 0.23 16 22 C -0.11 0.32 9.71 22.26 0.22 0.54 16 23 C -0.14 1.25 7.27 31.22 0.23 1.48 16 24 C -0.08 -0.04 10.70 66.72 0.71 0.67 16 25 S 0.12 0.25 20.58 -56.49 -1.16 -0.91 16 26 H 0.41 -5.32 8.74 -74.06 -0.65 -5.97 16 27 H 0.12 -1.06 7.96 -2.39 -0.02 -1.08 16 28 H -0.26 0.00 7.11 99.48 0.71 0.70 16 29 H -0.28 -1.14 7.11 99.48 0.71 -0.43 16 30 H 0.16 0.05 7.97 -2.91 -0.02 0.02 16 31 H 0.43 -3.88 8.81 -96.75 -0.85 -4.73 16 32 H 0.11 -0.94 7.73 -2.39 -0.02 -0.95 16 33 H 0.08 -0.61 8.14 -2.38 -0.02 -0.63 16 34 H 0.15 -1.43 6.64 -2.91 -0.02 -1.45 16 35 H 0.14 -0.48 8.06 -2.91 -0.02 -0.50 16 36 H 0.14 -0.23 8.06 -2.91 -0.02 -0.26 16 37 H 0.15 -0.97 8.05 -2.91 -0.02 -0.99 16 38 H 0.08 -0.64 8.14 -2.38 -0.02 -0.66 16 39 H 0.11 -1.16 6.30 -2.39 -0.02 -1.17 16 40 H 0.20 -0.81 8.00 -2.91 -0.02 -0.83 16 Total: 0.00 -25.14 379.64 -4.22 -29.36 By element: Atomic # 1 Polarization: -20.49 SS G_CDS: -0.35 Total: -20.84 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: 2.89 Total: 4.61 kcal Atomic # 7 Polarization: 5.73 SS G_CDS: -0.96 Total: 4.77 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -6.36 Total: -21.31 kcal Atomic # 14 Polarization: -3.07 SS G_CDS: 2.12 Total: -0.95 kcal Atomic # 16 Polarization: 6.21 SS G_CDS: -1.49 Total: 4.72 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -0.08 Total: -0.36 kcal Total: -25.14 -4.22 -29.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9610468_15065232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.520 kcal (2) G-P(sol) polarization free energy of solvation -25.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds