Wall clock time and date at job start Mon Mar 8 2021 14:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33383 * 125.20268 * 2 1 4 4 C 1.50700 * 122.54452 * 359.94635 * 3 2 1 5 5 O 1.42904 * 109.46861 * 75.32146 * 4 3 2 6 6 Si 1.86302 * 109.46863 * 315.32767 * 4 3 2 7 7 C 1.38429 * 114.92007 * 179.97438 * 3 2 1 8 8 S 1.76202 * 122.54061 * 179.97438 * 7 3 2 9 9 O 1.42098 * 106.39879 * 24.47509 * 8 7 3 10 10 O 1.42092 * 106.40184 * 157.39902 * 8 7 3 11 11 N 1.65603 * 107.21666 * 270.93848 * 8 7 3 12 12 C 1.46499 * 120.00339 * 66.61923 * 11 8 7 13 13 H 1.09004 * 112.84587 * 14.69909 * 12 11 8 14 14 C 1.53778 * 113.61927 * 145.89838 * 12 11 8 15 15 C 1.53782 * 87.08285 * 89.11448 * 14 12 11 16 16 H 1.08997 * 113.61485 * 270.88803 * 15 14 12 17 17 C 1.50698 * 113.61315 * 140.06576 * 15 14 12 18 18 C 1.38242 * 119.98746 * 299.73132 * 17 15 14 19 19 C 1.38215 * 120.01098 * 179.72642 * 18 17 15 20 20 C 1.38356 * 119.98720 * 0.54562 * 19 18 17 21 21 Cl 1.73595 * 120.01144 * 179.74776 * 20 19 18 22 22 C 1.38350 * 119.97268 * 359.72867 * 20 19 18 23 23 C 1.38218 * 119.98814 * 359.97438 * 22 20 19 24 24 C 1.53782 * 87.07811 * 25.43602 * 15 14 12 25 25 C 1.33387 * 114.91886 * 0.25562 * 7 3 2 26 26 C 1.50700 * 125.19967 * 179.75488 * 25 7 3 27 27 S 1.75881 * 109.59428 * 359.62748 * 25 7 3 28 28 H 1.09004 * 109.47024 * 88.21156 * 1 2 3 29 29 H 1.08995 * 109.47254 * 208.21399 * 1 2 3 30 30 H 1.09003 * 109.47173 * 328.21129 * 1 2 3 31 31 H 1.08996 * 109.47346 * 195.32373 * 4 3 2 32 32 H 0.96699 * 114.00174 * 65.06977 * 5 4 3 33 33 H 1.48500 * 109.99941 * 175.34607 * 6 4 3 34 34 H 1.48508 * 109.99642 * 296.66128 * 6 4 3 35 35 H 0.96996 * 120.00102 * 246.62162 * 11 8 7 36 36 H 1.08994 * 113.61806 * 203.66595 * 14 12 11 37 37 H 1.09008 * 113.60917 * 334.48520 * 14 12 11 38 38 H 1.07999 * 119.99065 * 359.97438 * 18 17 15 39 39 H 1.07999 * 120.00898 * 180.27007 * 19 18 17 40 40 H 1.07996 * 120.00996 * 179.97438 * 22 20 19 41 41 H 1.07999 * 119.99413 * 179.97438 * 23 22 20 42 42 H 1.09000 * 113.61732 * 220.01971 * 24 15 14 43 43 H 1.09001 * 113.61331 * 89.11264 * 24 15 14 44 44 H 1.09000 * 109.47130 * 84.08366 * 26 25 7 45 45 H 1.09005 * 109.46788 * 204.07813 * 26 25 7 46 46 H 1.08992 * 109.47521 * 324.08202 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 1.7052 2.4847 -0.0012 5 8 1.2079 2.7969 1.3016 6 14 0.3150 2.5856 -1.2372 7 6 3.6380 0.8428 0.0006 8 16 4.8357 2.1352 0.0000 9 8 4.1983 3.2731 0.5638 10 8 6.0313 1.5744 0.5246 11 7 5.1503 2.5112 -1.5818 12 6 4.1069 3.1178 -2.4121 13 1 3.2712 3.5026 -1.8275 14 6 4.6472 4.1187 -3.4470 15 6 4.7930 2.9266 -4.4075 16 1 5.7570 2.4230 -4.3352 17 6 4.4041 3.2450 -5.8282 18 6 3.1183 3.6639 -6.1152 19 6 2.7627 3.9615 -7.4172 20 6 3.6906 3.8292 -8.4350 21 17 3.2427 4.1966 -10.0714 22 6 4.9756 3.4045 -8.1478 23 6 5.3318 3.1131 -6.8445 24 6 3.6778 2.2411 -3.6004 25 6 3.9750 -0.4478 -0.0044 26 6 5.3860 -0.9771 -0.0102 27 16 2.5209 -1.4372 0.0006 28 1 -0.3633 0.0321 -1.0272 29 1 -0.3633 -0.9055 0.4858 30 1 -0.3634 0.8735 0.5414 31 1 2.4851 3.1961 -0.2725 32 1 1.8918 2.8396 1.9839 33 1 -0.3295 3.9217 -1.1687 34 1 0.8345 2.3420 -2.6070 35 1 6.0255 2.3297 -1.9586 36 1 3.9096 4.8528 -3.7710 37 1 5.5976 4.5706 -3.1625 38 1 2.3928 3.7625 -5.3213 39 1 1.7594 4.2929 -7.6408 40 1 5.7002 3.3007 -8.9418 41 1 6.3348 2.7812 -6.6204 42 1 3.8461 1.1761 -3.4404 43 1 2.6751 2.4620 -3.9664 44 1 5.7665 -1.0086 1.0108 45 1 5.3953 -1.9819 -0.4326 46 1 6.0167 -0.3237 -0.6129 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_9610468_15065288.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:43:52 Heat of formation + Delta-G solvation = -20.250303 kcal Electronic energy + Delta-G solvation = -33829.897350 eV Core-core repulsion = 29352.669509 eV Total energy + Delta-G solvation = -4477.227841 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 414.056 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.35194 -40.25859 -39.42349 -38.67464 -37.41340 -37.16711 -36.98610 -34.35461 -34.27155 -32.10155 -31.31017 -30.77796 -28.05561 -26.77588 -26.12557 -25.81658 -23.92381 -23.24675 -22.74458 -21.07535 -20.39548 -19.96715 -19.24171 -18.61890 -18.20743 -18.17341 -17.38601 -16.87178 -16.70990 -16.39199 -16.16339 -16.02340 -15.54655 -15.35922 -15.09511 -14.98172 -14.71943 -14.64445 -14.42559 -14.28657 -14.13518 -14.10162 -14.06161 -13.80358 -13.52810 -13.43725 -13.41479 -13.38270 -13.09963 -12.88570 -12.68348 -12.64155 -12.58911 -12.47271 -12.16666 -11.96381 -11.82800 -11.72632 -11.64215 -11.37432 -11.20541 -10.94862 -10.61595 -10.04280 -9.95405 -9.52668 -9.49822 -4.85350 -0.87472 -0.41959 0.09355 0.28950 0.41734 0.70927 0.86954 1.14459 1.32136 1.57306 1.89490 1.97010 2.53887 2.56117 3.10219 3.36527 3.49115 3.53407 3.58156 3.72071 3.78305 3.85125 3.89630 3.91621 3.97330 4.04999 4.10231 4.23153 4.27350 4.32462 4.39332 4.51820 4.56000 4.65867 4.69905 4.70538 4.73098 4.74145 4.85660 4.91885 4.93718 5.00023 5.01940 5.09746 5.11361 5.20500 5.24407 5.31191 5.34371 5.58604 5.80780 5.93601 6.55093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.169 4.169 3 C -0.092 4.092 4 C -0.100 4.100 5 O -0.540 6.540 6 Si 0.754 3.246 7 C -0.692 4.692 8 S 2.715 3.285 9 O -0.979 6.979 10 O -0.972 6.972 11 N -1.084 6.084 12 C 0.110 3.890 13 H 0.094 0.906 14 C -0.132 4.132 15 C -0.065 4.065 16 H 0.119 0.881 17 C -0.067 4.067 18 C -0.110 4.110 19 C -0.117 4.117 20 C -0.055 4.055 21 Cl -0.082 7.082 22 C -0.117 4.117 23 C -0.105 4.105 24 C -0.148 4.148 25 C -0.059 4.059 26 C -0.115 4.115 27 S 0.187 5.813 28 H 0.112 0.888 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.372 0.628 33 H -0.287 1.287 34 H -0.227 1.227 35 H 0.432 0.568 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.144 0.856 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.151 0.849 42 H 0.087 0.913 43 H 0.099 0.901 44 H 0.096 0.904 45 H 0.101 0.899 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.769 -5.450 -1.995 5.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.287 4.287 3 C -0.103 4.103 4 C -0.210 4.210 5 O -0.346 6.346 6 Si 0.652 3.348 7 C -0.793 4.793 8 S 2.805 3.195 9 O -0.968 6.968 10 O -0.962 6.962 11 N -0.846 5.846 12 C 0.003 3.997 13 H 0.112 0.888 14 C -0.171 4.171 15 C -0.083 4.083 16 H 0.137 0.863 17 C -0.067 4.067 18 C -0.128 4.128 19 C -0.136 4.136 20 C -0.081 4.081 21 Cl -0.054 7.054 22 C -0.136 4.136 23 C -0.123 4.123 24 C -0.187 4.187 25 C -0.180 4.180 26 C -0.173 4.173 27 S 0.453 5.547 28 H 0.130 0.870 29 H 0.119 0.881 30 H 0.116 0.884 31 H 0.106 0.894 32 H 0.221 0.779 33 H -0.214 1.214 34 H -0.151 1.151 35 H 0.270 0.730 36 H 0.119 0.881 37 H 0.108 0.892 38 H 0.161 0.839 39 H 0.157 0.843 40 H 0.158 0.842 41 H 0.169 0.831 42 H 0.106 0.894 43 H 0.118 0.882 44 H 0.114 0.886 45 H 0.119 0.881 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.760 -6.170 -2.330 6.826 hybrid contribution 1.789 1.684 0.113 2.460 sum 0.029 -4.485 -2.217 5.003 Atomic orbital electron populations 1.20600 0.85580 1.04890 1.05256 1.24742 1.01616 0.94752 1.07633 1.18543 0.90282 0.97128 1.04316 1.26005 1.09354 0.91707 0.93891 1.86613 1.37813 1.92881 1.17325 0.92651 0.82959 0.84500 0.74666 1.29359 1.11795 1.13332 1.24855 1.01045 0.72634 0.73177 0.72658 1.93519 1.77119 1.49709 1.76501 1.93585 1.45676 1.79633 1.77346 1.55039 1.22394 1.76758 1.30376 1.21870 0.90086 0.95689 0.92086 0.88824 1.23449 1.03427 0.96309 0.93933 1.21594 1.00414 0.97589 0.88753 0.86276 1.19964 0.93450 0.97744 0.95586 1.21179 0.96811 0.98932 0.95913 1.21243 0.99796 1.00427 0.92136 1.21161 0.96130 1.05009 0.85802 1.98383 1.92986 1.93279 1.20705 1.21285 0.94630 0.99300 0.98384 1.21300 1.00691 0.99203 0.91104 1.23698 0.99553 1.00754 0.94733 1.24757 1.01702 0.95037 0.96517 1.20972 0.87571 1.03352 1.05444 1.84324 0.94179 1.07637 1.68554 0.86973 0.88077 0.88418 0.89421 0.77933 1.21404 1.15115 0.73036 0.88067 0.89225 0.83880 0.84305 0.84192 0.83101 0.89443 0.88249 0.88567 0.88064 0.88702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.70 8.23 71.24 0.59 1.28 16 2 C -0.17 0.25 6.11 24.59 0.15 0.40 16 3 C -0.09 -0.14 4.70 -20.92 -0.10 -0.24 16 4 C -0.10 -0.35 1.88 71.24 0.13 -0.22 16 5 O -0.54 -3.13 12.27 -148.98 -1.83 -4.96 16 6 Si 0.75 -0.09 27.16 68.60 1.86 1.77 16 7 C -0.69 -1.07 5.88 21.22 0.12 -0.95 16 8 S 2.72 7.57 5.30 -56.49 -0.30 7.27 16 9 O -0.98 -8.15 14.34 -128.00 -1.84 -9.99 16 10 O -0.97 -6.31 15.17 -128.00 -1.94 -8.25 16 11 N -1.08 4.10 5.73 -167.19 -0.96 3.14 16 12 C 0.11 -0.42 4.52 45.52 0.21 -0.22 16 13 H 0.09 -0.16 4.94 -2.39 -0.01 -0.17 16 14 C -0.13 0.75 7.33 31.12 0.23 0.98 16 15 C -0.07 0.44 3.80 -11.01 -0.04 0.40 16 16 H 0.12 -1.17 8.07 -2.39 -0.02 -1.19 16 17 C -0.07 0.24 5.29 -19.86 -0.11 0.13 16 18 C -0.11 0.26 8.63 22.27 0.19 0.45 16 19 C -0.12 -0.02 9.83 22.29 0.22 0.20 16 20 C -0.05 -0.11 6.32 22.32 0.14 0.03 16 21 Cl -0.08 -0.29 28.96 -2.72 -0.08 -0.37 16 22 C -0.12 0.03 9.83 22.29 0.22 0.25 16 23 C -0.10 0.32 9.71 22.27 0.22 0.54 16 24 C -0.15 0.87 7.25 31.12 0.23 1.09 16 25 C -0.06 0.04 6.49 24.59 0.16 0.20 16 26 C -0.12 0.37 8.86 71.24 0.63 1.00 16 27 S 0.19 -0.54 23.31 -56.49 -1.32 -1.85 16 28 H 0.11 -1.23 6.72 -2.39 -0.02 -1.24 16 29 H 0.10 -0.94 8.14 -2.39 -0.02 -0.96 16 30 H 0.10 -0.55 5.83 -2.39 -0.01 -0.56 16 31 H 0.09 0.42 2.77 -2.39 -0.01 0.41 16 32 H 0.37 1.40 9.11 -74.06 -0.67 0.73 16 33 H -0.29 -1.97 7.11 99.48 0.71 -1.26 16 34 H -0.23 0.50 6.70 99.48 0.67 1.17 16 35 H 0.43 -3.68 8.79 -96.75 -0.85 -4.53 16 36 H 0.10 -0.59 7.73 -2.39 -0.02 -0.61 16 37 H 0.09 -0.57 8.14 -2.38 -0.02 -0.59 16 38 H 0.14 -0.79 6.65 -2.91 -0.02 -0.81 16 39 H 0.14 -0.25 8.06 -2.91 -0.02 -0.27 16 40 H 0.14 -0.33 8.06 -2.91 -0.02 -0.35 16 41 H 0.15 -1.13 8.05 -2.91 -0.02 -1.16 16 42 H 0.09 -0.57 8.14 -2.39 -0.02 -0.59 16 43 H 0.10 -0.58 5.90 -2.39 -0.01 -0.60 16 44 H 0.10 -0.19 8.14 -2.39 -0.02 -0.21 16 45 H 0.10 -0.76 8.14 -2.38 -0.02 -0.78 16 46 H 0.09 -0.37 6.67 -2.39 -0.02 -0.39 16 Total: 0.00 -18.18 398.78 -3.66 -21.85 By element: Atomic # 1 Polarization: -13.50 SS G_CDS: -0.46 Total: -13.95 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: 3.19 Total: 5.33 kcal Atomic # 7 Polarization: 4.10 SS G_CDS: -0.96 Total: 3.14 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -5.61 Total: -23.20 kcal Atomic # 14 Polarization: -0.09 SS G_CDS: 1.86 Total: 1.77 kcal Atomic # 16 Polarization: 7.04 SS G_CDS: -1.62 Total: 5.42 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -0.08 Total: -0.37 kcal Total: -18.18 -3.66 -21.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9610468_15065288.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.597 kcal (2) G-P(sol) polarization free energy of solvation -18.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds