Wall clock time and date at job start Mon Mar 8 2021 14:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86302 * 109.46937 * 2 1 4 4 C 1.50697 * 109.47142 * 120.00096 * 2 1 3 5 5 C 1.38207 * 119.99760 * 75.83093 * 4 2 1 6 6 S 1.76203 * 120.00300 * 359.97438 * 5 4 2 7 7 O 1.42094 * 106.39833 * 310.52833 * 6 5 4 8 8 O 1.42103 * 106.40158 * 177.61200 * 6 5 4 9 9 N 1.65598 * 107.21980 * 64.07064 * 6 5 4 10 10 C 1.46496 * 120.00145 * 64.14869 * 9 6 5 11 11 H 1.08995 * 112.84814 * 13.25327 * 10 9 6 12 12 C 1.53787 * 113.61015 * 144.44160 * 10 9 6 13 13 C 1.53780 * 87.08021 * 89.20398 * 12 10 9 14 14 H 1.08994 * 113.61463 * 270.79928 * 13 12 10 15 15 C 1.50699 * 113.61570 * 139.97604 * 13 12 10 16 16 C 1.38245 * 119.98569 * 121.52651 * 15 13 12 17 17 C 1.38215 * 120.01374 * 179.97438 * 16 15 13 18 18 C 1.38342 * 119.98543 * 0.02686 * 17 16 15 19 19 Cl 1.73603 * 120.01451 * 180.02562 * 18 17 16 20 20 C 1.38355 * 119.97957 * 0.27412 * 18 17 16 21 21 C 1.38215 * 119.97937 * 359.40239 * 20 18 17 22 22 C 1.53782 * 87.17331 * 25.38918 * 13 12 10 23 23 C 1.38265 * 119.99867 * 180.25108 * 5 4 2 24 24 C 1.38207 * 119.99686 * 359.51585 * 23 5 4 25 25 C 1.38255 * 120.00110 * 0.44258 * 24 23 5 26 26 C 1.38208 * 119.99993 * 359.81408 * 25 24 23 27 27 H 0.96696 * 114.00200 * 64.92819 * 1 2 3 28 28 H 1.08999 * 109.46786 * 240.00473 * 2 1 3 29 29 H 1.48498 * 110.00039 * 60.00243 * 3 2 1 30 30 H 1.48500 * 109.99783 * 181.31876 * 3 2 1 31 31 H 0.97007 * 119.99806 * 244.16057 * 9 6 5 32 32 H 1.08997 * 113.61605 * 334.65539 * 12 10 9 33 33 H 1.08995 * 113.68752 * 203.76188 * 12 10 9 34 34 H 1.08001 * 119.99283 * 0.02562 * 16 15 13 35 35 H 1.07999 * 120.00468 * 180.02562 * 17 16 15 36 36 H 1.07999 * 120.01504 * 179.72311 * 20 18 17 37 37 H 1.08005 * 119.99504 * 180.32079 * 21 20 18 38 38 H 1.09003 * 113.61550 * 89.15644 * 22 13 12 39 39 H 1.08999 * 113.61321 * 220.06294 * 22 13 12 40 40 H 1.08004 * 119.99938 * 179.73083 * 23 5 4 41 41 H 1.08000 * 119.99929 * 180.26821 * 24 23 5 42 42 H 1.08000 * 120.00069 * 179.82968 * 25 24 23 43 43 H 1.08000 * 120.00065 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.8855 -2.0900 1.2989 6 16 1.2390 -3.0182 -0.0521 7 8 -0.0088 -2.4257 -0.3853 8 8 1.3800 -4.3882 0.2983 9 7 2.2393 -2.7613 -1.3466 10 6 3.6322 -3.2124 -1.2969 11 1 3.8268 -3.8947 -0.4696 12 6 4.1653 -3.7156 -2.6488 13 6 4.5914 -2.2653 -2.9315 14 1 3.8183 -1.6698 -3.4169 15 6 5.9313 -2.1515 -3.6118 16 6 6.0328 -1.5182 -4.8364 17 6 7.2615 -1.4130 -5.4606 18 6 8.3898 -1.9421 -4.8599 19 17 9.9335 -1.8098 -5.6429 20 6 8.2867 -2.5813 -3.6372 21 6 7.0586 -2.6799 -3.0108 22 6 4.6555 -2.0676 -1.4078 23 6 2.3416 -2.7416 2.4299 24 6 2.8526 -2.0138 3.4879 25 6 2.8993 -0.6337 3.4190 26 6 2.4385 0.0178 2.2906 27 1 -0.3933 0.3743 -0.8001 28 1 1.7923 -0.5138 -0.8900 29 1 1.5615 2.4679 1.2085 30 1 3.5346 1.7703 -0.0321 31 1 1.9029 -2.3120 -2.1378 32 1 3.3854 -4.0797 -3.3175 33 1 5.0029 -4.4072 -2.5592 34 1 5.1520 -1.1048 -5.3051 35 1 7.3407 -0.9179 -6.4172 36 1 9.1664 -2.9984 -3.1698 37 1 6.9787 -3.1743 -2.0539 38 1 5.6275 -2.3076 -0.9768 39 1 4.2708 -1.1032 -1.0761 40 1 2.3017 -3.8195 2.4852 41 1 3.2128 -2.5229 4.3695 42 1 3.2961 -0.0648 4.2468 43 1 2.4753 1.0959 2.2366 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_9610468_2726874.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:43:58 Heat of formation + Delta-G solvation = -17.309474 kcal Electronic energy + Delta-G solvation = -30665.423669 eV Core-core repulsion = 26410.246343 eV Total energy + Delta-G solvation = -4255.177326 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 380.068 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -41.44489 -40.71773 -39.48917 -38.34309 -37.42610 -37.33601 -36.75446 -34.40458 -33.02087 -32.50611 -32.18021 -31.36078 -27.04788 -26.89752 -26.16207 -24.50771 -24.00258 -22.82273 -22.72935 -20.93348 -20.38162 -19.23154 -18.59059 -18.44046 -18.13247 -17.42548 -17.13774 -16.92402 -16.55967 -16.45995 -16.00123 -15.72905 -15.51463 -15.24920 -15.10362 -14.87952 -14.73819 -14.51665 -14.23921 -14.10243 -13.94468 -13.75040 -13.62575 -13.57818 -13.21376 -12.99723 -12.89870 -12.83512 -12.68180 -12.63329 -12.20208 -12.17249 -12.07705 -11.88134 -11.78298 -11.67342 -11.40311 -10.72754 -10.54727 -10.30513 -10.16054 -10.11039 -9.57056 -5.13230 -0.68069 -0.32585 0.01627 0.04397 0.21941 1.06940 1.15666 1.48572 1.77624 1.85325 2.28075 2.49058 2.72466 3.13733 3.21964 3.34188 3.44301 3.45912 3.59967 3.68147 3.70968 3.75710 3.81911 3.84676 3.87985 3.93602 4.02144 4.14733 4.21272 4.24166 4.31279 4.45705 4.45926 4.53809 4.62665 4.64200 4.72313 4.77268 4.83345 4.88173 4.89428 5.01358 5.11637 5.15003 5.18046 5.22286 5.47272 5.60110 5.71320 5.78764 6.64432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.514 6.514 2 C -0.105 4.105 3 Si 0.692 3.308 4 C 0.030 3.970 5 C -0.654 4.654 6 S 2.690 3.310 7 O -0.924 6.924 8 O -0.957 6.957 9 N -1.100 6.100 10 C 0.124 3.876 11 H 0.108 0.892 12 C -0.132 4.132 13 C -0.074 4.074 14 H 0.102 0.898 15 C -0.067 4.067 16 C -0.103 4.103 17 C -0.107 4.107 18 C -0.039 4.039 19 Cl -0.070 7.070 20 C -0.107 4.107 21 C -0.105 4.105 22 C -0.150 4.150 23 C -0.021 4.021 24 C -0.133 4.133 25 C -0.057 4.057 26 C -0.144 4.144 27 H 0.385 0.615 28 H 0.072 0.928 29 H -0.246 1.246 30 H -0.251 1.251 31 H 0.419 0.581 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.098 0.902 39 H 0.077 0.923 40 H 0.148 0.852 41 H 0.138 0.862 42 H 0.135 0.865 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.106 2.889 -1.410 3.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.320 6.320 2 C -0.216 4.216 3 Si 0.592 3.408 4 C 0.029 3.971 5 C -0.740 4.740 6 S 2.779 3.221 7 O -0.914 6.914 8 O -0.947 6.947 9 N -0.859 5.859 10 C 0.016 3.984 11 H 0.126 0.874 12 C -0.171 4.171 13 C -0.092 4.092 14 H 0.121 0.879 15 C -0.067 4.067 16 C -0.121 4.121 17 C -0.126 4.126 18 C -0.065 4.065 19 Cl -0.041 7.041 20 C -0.126 4.126 21 C -0.124 4.124 22 C -0.189 4.189 23 C -0.040 4.040 24 C -0.152 4.152 25 C -0.075 4.075 26 C -0.163 4.163 27 H 0.233 0.767 28 H 0.090 0.910 29 H -0.171 1.171 30 H -0.175 1.175 31 H 0.254 0.746 32 H 0.102 0.898 33 H 0.117 0.883 34 H 0.150 0.850 35 H 0.152 0.848 36 H 0.151 0.849 37 H 0.150 0.850 38 H 0.116 0.884 39 H 0.095 0.905 40 H 0.165 0.835 41 H 0.156 0.844 42 H 0.153 0.847 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.129 2.613 -0.286 3.383 hybrid contribution 0.699 0.211 0.160 0.748 sum 2.829 2.824 -0.126 3.999 Atomic orbital electron populations 1.86666 1.14234 1.86357 1.44763 1.25040 0.88458 1.11589 0.96483 0.94899 0.80584 0.77681 0.87625 1.18896 0.92741 0.91526 0.93924 1.30820 1.18277 1.06023 1.18919 1.02220 0.73171 0.73747 0.72995 1.93702 1.37453 1.77812 1.82394 1.93598 1.86156 1.31366 1.83563 1.55500 1.22447 1.75325 1.32591 1.21706 0.80005 0.96452 1.00279 0.87381 1.23408 1.01651 0.95831 0.96199 1.21586 0.94179 0.98151 0.95278 0.87934 1.19798 0.94844 0.97361 0.94701 1.21049 0.97201 0.99021 0.94830 1.21101 0.91243 0.99727 1.00544 1.20998 0.87310 1.02844 0.95373 1.98395 1.28459 1.96870 1.80389 1.21084 0.98750 0.98983 0.93784 1.20978 0.91386 0.99837 1.00153 1.23688 1.00155 0.99741 0.95340 1.21088 0.91063 1.00831 0.91034 1.21392 1.00340 0.94165 0.99292 1.21456 0.94236 0.94959 0.96882 1.21151 1.01243 0.99744 0.94123 0.76743 0.91023 1.17115 1.17547 0.74555 0.89832 0.88269 0.85000 0.84842 0.84871 0.84990 0.88371 0.90460 0.83466 0.84420 0.84679 0.85293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.51 -0.43 10.45 -57.77 -0.60 -1.03 16 2 C -0.10 0.06 1.83 36.00 0.07 0.12 16 3 Si 0.69 -1.29 30.31 -169.99 -5.15 -6.44 16 4 C 0.03 0.05 5.28 -104.63 -0.55 -0.51 16 5 C -0.65 -1.06 5.86 -39.58 -0.23 -1.29 16 6 S 2.69 4.21 4.95 -107.50 -0.53 3.68 16 7 O -0.92 -3.67 15.00 -66.42 -1.00 -4.66 16 8 O -0.96 -4.10 16.54 -57.17 -0.95 -5.04 16 9 N -1.10 2.47 4.46 -4.12 -0.02 2.46 16 10 C 0.12 -0.35 4.50 -67.03 -0.30 -0.65 16 11 H 0.11 -0.30 7.80 -51.93 -0.41 -0.71 16 12 C -0.13 0.44 7.33 -25.92 -0.19 0.25 16 13 C -0.07 0.26 3.80 -90.96 -0.35 -0.08 16 14 H 0.10 -0.49 8.05 -51.93 -0.42 -0.91 16 15 C -0.07 0.13 5.29 -104.62 -0.55 -0.42 16 16 C -0.10 0.16 9.71 -39.59 -0.38 -0.22 16 17 C -0.11 0.05 9.83 -39.55 -0.39 -0.34 16 18 C -0.04 -0.02 6.32 -39.50 -0.25 -0.27 16 19 Cl -0.07 -0.08 28.96 -51.86 -1.50 -1.58 16 20 C -0.11 0.05 9.83 -39.55 -0.39 -0.34 16 21 C -0.11 0.17 8.54 -39.59 -0.34 -0.17 16 22 C -0.15 0.51 7.27 -25.83 -0.19 0.33 16 23 C -0.02 -0.02 9.55 -39.58 -0.38 -0.40 16 24 C -0.13 0.02 10.05 -39.59 -0.40 -0.37 16 25 C -0.06 0.00 10.05 -39.59 -0.40 -0.40 16 26 C -0.14 -0.18 8.66 -39.59 -0.34 -0.52 16 27 H 0.38 -1.47 8.86 45.56 0.40 -1.07 16 28 H 0.07 -0.22 5.82 -51.93 -0.30 -0.52 16 29 H -0.25 -0.25 6.72 56.52 0.38 0.13 16 30 H -0.25 0.00 7.11 56.52 0.40 0.40 16 31 H 0.42 -1.89 8.48 -34.47 -0.29 -2.18 16 32 H 0.08 -0.28 8.14 -51.93 -0.42 -0.70 16 33 H 0.10 -0.36 7.64 -51.93 -0.40 -0.75 16 34 H 0.13 -0.46 8.05 -52.49 -0.42 -0.89 16 35 H 0.13 -0.20 8.06 -52.49 -0.42 -0.63 16 36 H 0.13 -0.20 8.06 -52.49 -0.42 -0.62 16 37 H 0.13 -0.46 6.73 -52.48 -0.35 -0.81 16 38 H 0.10 -0.38 6.39 -51.93 -0.33 -0.71 16 39 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 40 H 0.15 -0.02 7.34 -52.48 -0.39 -0.41 16 41 H 0.14 -0.36 8.06 -52.49 -0.42 -0.78 16 42 H 0.14 -0.33 8.06 -52.49 -0.42 -0.75 16 43 H 0.13 0.07 4.91 -52.49 -0.26 -0.19 16 LS Contribution 376.76 15.07 5.68 5.68 Total: 0.00 -10.44 376.76 -14.55 -24.99 By element: Atomic # 1 Polarization: -7.84 SS G_CDS: -4.92 Total: -12.75 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -5.56 Total: -5.29 kcal Atomic # 7 Polarization: 2.47 SS G_CDS: -0.02 Total: 2.46 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: -2.55 Total: -10.74 kcal Atomic # 14 Polarization: -1.29 SS G_CDS: -5.15 Total: -6.44 kcal Atomic # 16 Polarization: 4.21 SS G_CDS: -0.53 Total: 3.68 kcal Atomic # 17 Polarization: -0.08 SS G_CDS: -1.50 Total: -1.58 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -10.44 -14.55 -24.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9610468_2726874.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.678 kcal (2) G-P(sol) polarization free energy of solvation -10.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds