Wall clock time and date at job start Mon Mar 8 2021 14:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86302 * 109.46937 * 2 1 4 4 C 1.50697 * 109.47142 * 120.00096 * 2 1 3 5 5 C 1.38207 * 119.99760 * 75.83093 * 4 2 1 6 6 S 1.76203 * 120.00300 * 359.97438 * 5 4 2 7 7 O 1.42094 * 106.39833 * 310.52833 * 6 5 4 8 8 O 1.42103 * 106.40158 * 177.61200 * 6 5 4 9 9 N 1.65598 * 107.21980 * 64.07064 * 6 5 4 10 10 C 1.46496 * 120.00145 * 64.14869 * 9 6 5 11 11 H 1.08995 * 112.84814 * 13.25327 * 10 9 6 12 12 C 1.53787 * 113.61015 * 144.44160 * 10 9 6 13 13 C 1.53780 * 87.08021 * 89.20398 * 12 10 9 14 14 H 1.08994 * 113.61463 * 270.79928 * 13 12 10 15 15 C 1.50699 * 113.61570 * 139.97604 * 13 12 10 16 16 C 1.38245 * 119.98569 * 121.52651 * 15 13 12 17 17 C 1.38215 * 120.01374 * 179.97438 * 16 15 13 18 18 C 1.38342 * 119.98543 * 0.02686 * 17 16 15 19 19 Cl 1.73603 * 120.01451 * 180.02562 * 18 17 16 20 20 C 1.38355 * 119.97957 * 0.27412 * 18 17 16 21 21 C 1.38215 * 119.97937 * 359.40239 * 20 18 17 22 22 C 1.53782 * 87.17331 * 25.38918 * 13 12 10 23 23 C 1.38265 * 119.99867 * 180.25108 * 5 4 2 24 24 C 1.38207 * 119.99686 * 359.51585 * 23 5 4 25 25 C 1.38255 * 120.00110 * 0.44258 * 24 23 5 26 26 C 1.38208 * 119.99993 * 359.81408 * 25 24 23 27 27 H 0.96696 * 114.00200 * 64.92819 * 1 2 3 28 28 H 1.08999 * 109.46786 * 240.00473 * 2 1 3 29 29 H 1.48498 * 110.00039 * 60.00243 * 3 2 1 30 30 H 1.48500 * 109.99783 * 181.31876 * 3 2 1 31 31 H 0.97007 * 119.99806 * 244.16057 * 9 6 5 32 32 H 1.08997 * 113.61605 * 334.65539 * 12 10 9 33 33 H 1.08995 * 113.68752 * 203.76188 * 12 10 9 34 34 H 1.08001 * 119.99283 * 0.02562 * 16 15 13 35 35 H 1.07999 * 120.00468 * 180.02562 * 17 16 15 36 36 H 1.07999 * 120.01504 * 179.72311 * 20 18 17 37 37 H 1.08005 * 119.99504 * 180.32079 * 21 20 18 38 38 H 1.09003 * 113.61550 * 89.15644 * 22 13 12 39 39 H 1.08999 * 113.61321 * 220.06294 * 22 13 12 40 40 H 1.08004 * 119.99938 * 179.73083 * 23 5 4 41 41 H 1.08000 * 119.99929 * 180.26821 * 24 23 5 42 42 H 1.08000 * 120.00069 * 179.82968 * 25 24 23 43 43 H 1.08000 * 120.00065 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.8855 -2.0900 1.2989 6 16 1.2390 -3.0182 -0.0521 7 8 -0.0088 -2.4257 -0.3853 8 8 1.3800 -4.3882 0.2983 9 7 2.2393 -2.7613 -1.3466 10 6 3.6322 -3.2124 -1.2969 11 1 3.8268 -3.8947 -0.4696 12 6 4.1653 -3.7156 -2.6488 13 6 4.5914 -2.2653 -2.9315 14 1 3.8183 -1.6698 -3.4169 15 6 5.9313 -2.1515 -3.6118 16 6 6.0328 -1.5182 -4.8364 17 6 7.2615 -1.4130 -5.4606 18 6 8.3898 -1.9421 -4.8599 19 17 9.9335 -1.8098 -5.6429 20 6 8.2867 -2.5813 -3.6372 21 6 7.0586 -2.6799 -3.0108 22 6 4.6555 -2.0676 -1.4078 23 6 2.3416 -2.7416 2.4299 24 6 2.8526 -2.0138 3.4879 25 6 2.8993 -0.6337 3.4190 26 6 2.4385 0.0178 2.2906 27 1 -0.3933 0.3743 -0.8001 28 1 1.7923 -0.5138 -0.8900 29 1 1.5615 2.4679 1.2085 30 1 3.5346 1.7703 -0.0321 31 1 1.9029 -2.3120 -2.1378 32 1 3.3854 -4.0797 -3.3175 33 1 5.0029 -4.4072 -2.5592 34 1 5.1520 -1.1048 -5.3051 35 1 7.3407 -0.9179 -6.4172 36 1 9.1664 -2.9984 -3.1698 37 1 6.9787 -3.1743 -2.0539 38 1 5.6275 -2.3076 -0.9768 39 1 4.2708 -1.1032 -1.0761 40 1 2.3017 -3.8195 2.4852 41 1 3.2128 -2.5229 4.3695 42 1 3.2961 -0.0648 4.2468 43 1 2.4753 1.0959 2.2366 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_9610468_2726874.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:43:57 Heat of formation + Delta-G solvation = -15.800342 kcal Electronic energy + Delta-G solvation = -30665.358228 eV Core-core repulsion = 26410.246343 eV Total energy + Delta-G solvation = -4255.111885 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 380.068 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.24264 -40.69808 -39.33891 -38.48532 -37.42273 -37.33402 -36.95183 -34.28134 -33.00004 -32.51221 -32.04010 -31.22689 -26.98746 -26.62997 -25.97323 -24.51709 -23.86070 -22.76043 -22.63209 -20.90445 -20.22266 -19.21212 -18.59563 -18.38318 -18.08982 -17.39611 -17.05744 -16.81326 -16.47529 -16.31471 -16.01483 -15.79363 -15.37048 -15.20228 -14.96323 -14.79515 -14.60497 -14.35317 -14.22992 -13.97131 -13.92744 -13.67658 -13.57487 -13.39815 -13.25272 -13.15885 -13.08406 -12.83765 -12.57783 -12.53408 -12.20096 -12.15762 -11.92266 -11.84590 -11.66670 -11.56997 -11.17253 -10.61213 -10.52637 -10.23251 -10.14285 -9.98280 -9.46550 -4.99398 -0.73501 -0.36254 0.00035 0.15340 0.34901 1.18557 1.18746 1.60044 1.84198 1.90501 2.27870 2.62172 2.65903 3.22048 3.28617 3.49675 3.61534 3.67610 3.69080 3.78164 3.88244 3.94232 3.96996 3.97897 4.00145 4.07982 4.22717 4.27079 4.29427 4.39011 4.45923 4.47028 4.66378 4.71450 4.77748 4.83887 4.87819 4.95365 5.01600 5.04163 5.10348 5.12263 5.16143 5.27469 5.30246 5.45096 5.63008 5.66301 5.87403 6.05159 6.92766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.539 6.539 2 C -0.121 4.121 3 Si 0.778 3.222 4 C 0.014 3.986 5 C -0.665 4.665 6 S 2.705 3.295 7 O -0.952 6.952 8 O -0.989 6.989 9 N -1.086 6.086 10 C 0.117 3.883 11 H 0.106 0.894 12 C -0.130 4.130 13 C -0.069 4.069 14 H 0.120 0.880 15 C -0.067 4.067 16 C -0.106 4.106 17 C -0.119 4.119 18 C -0.057 4.057 19 Cl -0.086 7.086 20 C -0.120 4.120 21 C -0.108 4.108 22 C -0.148 4.148 23 C -0.035 4.035 24 C -0.135 4.135 25 C -0.060 4.060 26 C -0.164 4.164 27 H 0.402 0.598 28 H 0.095 0.905 29 H -0.290 1.290 30 H -0.273 1.273 31 H 0.431 0.569 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.153 0.847 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.149 0.851 38 H 0.103 0.897 39 H 0.078 0.922 40 H 0.152 0.848 41 H 0.162 0.838 42 H 0.159 0.841 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.047 3.223 -1.486 4.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.230 4.230 3 Si 0.681 3.319 4 C 0.013 3.987 5 C -0.751 4.751 6 S 2.794 3.206 7 O -0.942 6.942 8 O -0.979 6.979 9 N -0.849 5.849 10 C 0.010 3.990 11 H 0.124 0.876 12 C -0.169 4.169 13 C -0.087 4.087 14 H 0.138 0.862 15 C -0.067 4.067 16 C -0.124 4.124 17 C -0.138 4.138 18 C -0.083 4.083 19 Cl -0.057 7.057 20 C -0.138 4.138 21 C -0.126 4.126 22 C -0.187 4.187 23 C -0.054 4.054 24 C -0.154 4.154 25 C -0.078 4.078 26 C -0.183 4.183 27 H 0.253 0.747 28 H 0.113 0.887 29 H -0.217 1.217 30 H -0.199 1.199 31 H 0.269 0.731 32 H 0.104 0.896 33 H 0.121 0.879 34 H 0.170 0.830 35 H 0.156 0.844 36 H 0.155 0.845 37 H 0.167 0.833 38 H 0.122 0.878 39 H 0.096 0.904 40 H 0.170 0.830 41 H 0.180 0.820 42 H 0.176 0.824 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.048 2.933 -0.406 3.600 hybrid contribution 0.722 0.112 0.254 0.773 sum 2.769 3.045 -0.153 4.119 Atomic orbital electron populations 1.86616 1.15006 1.86836 1.46359 1.25337 0.88070 1.12931 0.96672 0.93986 0.77805 0.74811 0.85283 1.19212 0.92884 0.91708 0.94908 1.30788 1.18956 1.06197 1.19204 1.01495 0.72918 0.72917 0.73230 1.93659 1.39501 1.78059 1.82951 1.93554 1.86700 1.33360 1.84305 1.55139 1.22432 1.75351 1.31948 1.21828 0.79460 0.96988 1.00755 0.87613 1.23421 1.01750 0.96079 0.95636 1.21648 0.93747 0.98214 0.95069 0.86212 1.20011 0.95434 0.96647 0.94583 1.21332 0.97408 0.98699 0.94930 1.21280 0.91520 0.99993 1.01008 1.21178 0.86994 1.04122 0.96024 1.98382 1.29571 1.97013 1.80724 1.21249 0.99585 0.99254 0.93757 1.21218 0.91032 0.99633 1.00739 1.23699 1.00106 0.99427 0.95459 1.21323 0.91356 1.01338 0.91388 1.21703 0.99692 0.94242 0.99713 1.21799 0.93532 0.95333 0.97128 1.21375 1.02013 1.00034 0.94836 0.74734 0.88710 1.21746 1.19896 0.73054 0.89617 0.87937 0.82954 0.84356 0.84498 0.83340 0.87845 0.90351 0.83024 0.82022 0.82375 0.85214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.98 10.45 -127.43 -1.33 -2.31 16 2 C -0.12 0.15 1.83 71.24 0.13 0.28 16 3 Si 0.78 -3.06 30.31 68.60 2.08 -0.98 16 4 C 0.01 0.05 5.28 -19.87 -0.10 -0.06 16 5 C -0.66 -2.44 5.86 22.27 0.13 -2.31 16 6 S 2.70 9.72 4.95 -56.49 -0.28 9.44 16 7 O -0.95 -8.13 15.00 -119.16 -1.79 -9.92 16 8 O -0.99 -9.34 16.54 -128.00 -2.12 -11.46 16 9 N -1.09 5.51 4.46 -166.96 -0.74 4.76 16 10 C 0.12 -0.76 4.50 45.58 0.21 -0.56 16 11 H 0.11 -0.61 7.80 -2.39 -0.02 -0.63 16 12 C -0.13 1.04 7.33 31.12 0.23 1.27 16 13 C -0.07 0.61 3.80 -11.01 -0.04 0.57 16 14 H 0.12 -1.45 8.05 -2.39 -0.02 -1.47 16 15 C -0.07 0.34 5.29 -19.86 -0.11 0.24 16 16 C -0.11 0.45 9.71 22.27 0.22 0.67 16 17 C -0.12 0.11 9.83 22.29 0.22 0.33 16 18 C -0.06 -0.08 6.32 22.32 0.14 0.06 16 19 Cl -0.09 -0.28 28.96 -2.72 -0.08 -0.36 16 20 C -0.12 0.09 9.83 22.29 0.22 0.31 16 21 C -0.11 0.43 8.54 22.27 0.19 0.62 16 22 C -0.15 1.21 7.27 31.18 0.23 1.43 16 23 C -0.03 -0.08 9.55 22.27 0.21 0.14 16 24 C -0.13 0.11 10.05 22.27 0.22 0.33 16 25 C -0.06 0.03 10.05 22.27 0.22 0.25 16 26 C -0.16 -0.45 8.66 22.27 0.19 -0.26 16 27 H 0.40 -3.16 8.86 -74.06 -0.66 -3.82 16 28 H 0.10 -0.67 5.82 -2.39 -0.01 -0.68 16 29 H -0.29 -0.90 6.72 99.48 0.67 -0.23 16 30 H -0.27 0.13 7.11 99.48 0.71 0.83 16 31 H 0.43 -4.39 8.48 -96.74 -0.82 -5.21 16 32 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 33 H 0.10 -0.86 7.64 -2.39 -0.02 -0.87 16 34 H 0.15 -1.36 8.05 -2.91 -0.02 -1.39 16 35 H 0.14 -0.39 8.06 -2.91 -0.02 -0.42 16 36 H 0.14 -0.33 8.06 -2.91 -0.02 -0.36 16 37 H 0.15 -1.19 6.73 -2.91 -0.02 -1.21 16 38 H 0.10 -0.93 6.39 -2.39 -0.02 -0.95 16 39 H 0.08 -0.62 8.14 -2.39 -0.02 -0.64 16 40 H 0.15 0.07 7.34 -2.91 -0.02 0.05 16 41 H 0.16 -1.04 8.06 -2.91 -0.02 -1.06 16 42 H 0.16 -0.94 8.06 -2.91 -0.02 -0.96 16 43 H 0.13 0.23 4.91 -2.91 -0.01 0.21 16 Total: 0.00 -24.87 376.76 -2.15 -27.02 By element: Atomic # 1 Polarization: -19.11 SS G_CDS: -0.40 Total: -19.50 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: 2.51 Total: 3.31 kcal Atomic # 7 Polarization: 5.51 SS G_CDS: -0.74 Total: 4.76 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -5.24 Total: -23.69 kcal Atomic # 14 Polarization: -3.06 SS G_CDS: 2.08 Total: -0.98 kcal Atomic # 16 Polarization: 9.72 SS G_CDS: -0.28 Total: 9.44 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -0.08 Total: -0.36 kcal Total: -24.87 -2.15 -27.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9610468_2726874.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.221 kcal (2) G-P(sol) polarization free energy of solvation -24.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds