Wall clock time and date at job start Mon Mar 8 2021 14:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86303 * 109.47195 * 2 1 4 4 C 1.86300 * 109.46942 * 240.00306 * 2 1 3 5 5 C 1.86802 * 109.47260 * 119.99919 * 2 1 3 6 6 C 1.38235 * 119.99725 * 89.99856 * 5 2 1 7 7 C 1.38234 * 119.99861 * 180.02562 * 6 5 2 8 8 C 1.38230 * 119.99837 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.99912 * 179.97438 * 8 7 6 10 10 N 1.46501 * 109.47282 * 90.00054 * 9 8 7 11 11 S 1.65599 * 120.00418 * 165.00028 * 10 9 8 12 12 O 1.42100 * 106.40241 * 311.46108 * 11 10 9 13 13 O 1.42096 * 106.40379 * 178.53729 * 11 10 9 14 14 C 1.76199 * 107.21658 * 65.00023 * 11 10 9 15 15 C 1.38238 * 120.00251 * 269.72679 * 14 11 10 16 16 C 1.38228 * 120.00121 * 179.76592 * 15 14 11 17 17 C 1.38234 * 120.00010 * 0.50740 * 16 15 14 18 18 C 1.50706 * 119.99834 * 179.72215 * 17 16 15 19 19 O 1.42895 * 109.47144 * 245.02165 * 18 17 16 20 20 Si 1.86301 * 109.47330 * 5.02493 * 18 17 16 21 21 H 1.48498 * 109.46774 * 299.99944 * 20 18 17 22 22 H 1.48503 * 109.46824 * 60.00126 * 20 18 17 23 23 H 1.48495 * 109.46988 * 179.97438 * 20 18 17 24 24 C 1.38229 * 119.99860 * 359.74632 * 17 16 15 25 25 C 1.38234 * 120.00019 * 90.00010 * 14 11 10 26 26 C 1.38228 * 120.00301 * 0.25311 * 8 7 6 27 27 C 1.38230 * 119.99972 * 270.02077 * 5 2 1 28 28 H 1.09005 * 109.46799 * 299.99626 * 1 2 3 29 29 H 1.08991 * 109.47344 * 59.99624 * 1 2 3 30 30 H 1.08997 * 109.47497 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47336 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.46985 * 300.00451 * 3 2 1 33 33 H 1.09000 * 109.46889 * 59.99978 * 3 2 1 34 34 H 1.08997 * 109.46970 * 299.99721 * 4 2 1 35 35 H 1.08999 * 109.47162 * 59.99596 * 4 2 1 36 36 H 1.08999 * 109.46861 * 179.97438 * 4 2 1 37 37 H 1.07999 * 120.00100 * 0.02562 * 6 5 2 38 38 H 1.07999 * 119.99759 * 179.97438 * 7 6 5 39 39 H 1.09005 * 109.47433 * 330.00507 * 9 8 7 40 40 H 1.08996 * 109.47407 * 209.99909 * 9 8 7 41 41 H 0.97001 * 119.99713 * 345.00235 * 10 9 8 42 42 H 1.08004 * 119.99572 * 0.02562 * 15 14 11 43 43 H 1.08004 * 120.00393 * 180.23620 * 16 15 14 44 44 H 1.09005 * 109.46627 * 125.02393 * 18 17 16 45 45 H 0.96705 * 113.99845 * 180.02562 * 19 18 17 46 46 H 1.08005 * 119.99920 * 179.97438 * 24 17 16 47 47 H 1.07999 * 120.00005 * 0.02562 * 25 14 11 48 48 H 1.08004 * 120.00186 * 179.72440 * 26 8 7 49 49 H 1.07997 * 120.00112 * 0.02562 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4839 -0.8782 -1.5212 5 6 2.4857 -0.8806 1.5252 6 6 2.7161 -2.2432 1.4910 7 6 3.1764 -2.8949 2.6198 8 6 3.4058 -2.1841 3.7829 9 6 3.9071 -2.8947 5.0137 10 7 5.3721 -2.8948 5.0150 11 16 6.1990 -3.2662 6.4009 12 8 5.6171 -2.4863 7.4365 13 8 7.5800 -3.2134 6.0706 14 6 5.8434 -4.9486 6.7853 15 6 4.7671 -5.2600 7.5950 16 6 4.4853 -6.5801 7.8927 17 6 5.2860 -7.5883 7.3892 18 6 4.9824 -9.0271 7.7189 19 8 6.0483 -9.5722 8.4990 20 14 3.3935 -9.1206 8.6872 21 1 3.5339 -8.3436 9.9449 22 1 2.2858 -8.5542 7.8764 23 1 3.0941 -10.5384 9.0114 24 6 6.3653 -7.2765 6.5839 25 6 6.6440 -5.9567 6.2819 26 6 3.1700 -0.8226 3.8189 27 6 2.7157 -0.1697 2.6882 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.5740 1.7565 -0.0005 32 1 2.1206 2.2703 -0.8899 33 1 2.1207 2.2703 0.8900 34 1 2.1206 -1.9058 -1.5212 35 1 2.1205 -0.3643 -2.4111 36 1 3.5739 -0.8777 -1.5214 37 1 2.5364 -2.7985 0.5823 38 1 3.3560 -3.9595 2.5931 39 1 3.5438 -3.9225 5.0133 40 1 3.5431 -2.3810 5.9035 41 1 5.8578 -2.6772 4.2040 42 1 4.1439 -4.4721 7.9916 43 1 3.6422 -6.8237 8.5222 44 1 4.8793 -9.5974 6.7957 45 1 5.9202 -10.4979 8.7478 46 1 6.9911 -8.0642 6.1909 47 1 7.4878 -5.7131 5.6533 48 1 3.3450 -0.2680 4.7290 49 1 2.5350 0.8947 2.7152 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_9630768_13421422.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:58:41 Heat of formation + Delta-G solvation = -98.488821 kcal Electronic energy + Delta-G solvation = -29308.323771 eV Core-core repulsion = 25257.445456 eV Total energy + Delta-G solvation = -4050.878315 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 379.123 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.66616 -40.24086 -38.22707 -37.80490 -36.83024 -36.40620 -33.19520 -32.24161 -31.91162 -31.87577 -29.58092 -28.47758 -28.44548 -27.28869 -26.60171 -24.14611 -23.50532 -22.86692 -22.18879 -20.63368 -19.22880 -18.70972 -18.62187 -17.77496 -17.25590 -16.97528 -16.74438 -16.32391 -15.98981 -15.92864 -15.67057 -15.38913 -14.80410 -14.63030 -14.50749 -14.41004 -14.29297 -14.23254 -14.14430 -14.07123 -13.98063 -13.83807 -13.63346 -13.40306 -13.29320 -13.14025 -13.13607 -13.07460 -13.00744 -12.83757 -12.53665 -12.46225 -12.25561 -12.02091 -11.91991 -11.81077 -11.07393 -10.93951 -10.87682 -10.67524 -10.64650 -10.33586 -10.16083 -9.82165 -9.70406 -0.72775 -0.35704 0.16819 0.22885 0.50478 0.94619 1.28617 1.34980 1.67320 1.75254 1.81405 1.84321 1.99580 2.32144 2.50954 2.74322 2.91474 3.15023 3.26833 3.57596 3.62042 3.70398 3.76543 3.84565 4.07404 4.09372 4.16286 4.25987 4.26756 4.34549 4.47360 4.54653 4.64699 4.66741 4.68518 4.70806 4.72093 4.72504 4.73547 4.74641 4.78428 4.91730 4.95660 4.97663 5.12791 5.22546 5.37159 5.43087 5.47116 5.50635 5.59405 5.60092 5.66033 5.85269 6.08345 6.37840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.060 2.940 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.363 4.363 6 C -0.091 4.091 7 C -0.114 4.114 8 C -0.093 4.093 9 C 0.156 3.844 10 N -1.112 6.112 11 S 2.695 3.305 12 O -0.952 6.952 13 O -0.953 6.953 14 C -0.676 4.676 15 C -0.015 4.015 16 C -0.145 4.145 17 C -0.018 4.018 18 C -0.092 4.092 19 O -0.541 6.541 20 Si 0.944 3.056 21 H -0.245 1.245 22 H -0.247 1.247 23 H -0.253 1.253 24 C -0.111 4.111 25 C -0.016 4.016 26 C -0.111 4.111 27 C -0.090 4.090 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.075 0.925 40 H 0.090 0.910 41 H 0.422 0.578 42 H 0.146 0.854 43 H 0.131 0.869 44 H 0.083 0.917 45 H 0.384 0.616 46 H 0.138 0.862 47 H 0.144 0.856 48 H 0.123 0.877 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.378 -3.268 -3.964 6.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.252 2.748 3 C -0.558 4.558 4 C -0.558 4.558 5 C -0.405 4.405 6 C -0.109 4.109 7 C -0.133 4.133 8 C -0.095 4.095 9 C 0.030 3.970 10 N -0.873 5.873 11 S 2.785 3.215 12 O -0.942 6.942 13 O -0.944 6.944 14 C -0.762 4.762 15 C -0.034 4.034 16 C -0.163 4.163 17 C -0.019 4.019 18 C -0.202 4.202 19 O -0.348 6.348 20 Si 0.766 3.234 21 H -0.168 1.168 22 H -0.170 1.170 23 H -0.176 1.176 24 C -0.129 4.129 25 C -0.035 4.035 26 C -0.130 4.130 27 C -0.108 4.108 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.093 0.907 40 H 0.109 0.891 41 H 0.257 0.743 42 H 0.163 0.837 43 H 0.149 0.851 44 H 0.101 0.899 45 H 0.232 0.768 46 H 0.156 0.844 47 H 0.162 0.838 48 H 0.141 0.859 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.462 -2.243 -2.841 5.745 hybrid contribution 0.162 -1.375 -0.445 1.454 sum -4.300 -3.618 -3.286 6.509 Atomic orbital electron populations 1.26128 1.20488 1.04560 1.04515 0.78171 0.66833 0.66113 0.63709 1.26143 1.06481 1.18593 1.04587 1.26139 1.06464 1.08026 1.15124 1.27445 1.03292 0.99547 1.10232 1.21083 0.97368 0.94648 0.97762 1.21160 0.99512 0.99790 0.92809 1.19720 1.00823 0.94229 0.94736 1.20253 0.78641 1.00555 0.97516 1.55615 1.15191 1.86176 1.30293 1.01901 0.72989 0.73729 0.72893 1.93606 1.78661 1.66738 1.55190 1.93619 1.30388 1.86758 1.83589 1.30990 1.07332 1.24949 1.12951 1.20871 0.93462 0.97062 0.92031 1.21146 1.00874 0.93014 1.01280 1.19636 0.94520 0.93526 0.94174 1.24871 1.01583 0.93286 1.00482 1.86509 1.43936 1.31555 1.72786 0.85749 0.75356 0.81570 0.80721 1.16786 1.17012 1.17644 1.21163 0.96840 0.96677 0.98258 1.20994 0.96009 0.92041 0.94480 1.21227 0.98959 0.93850 0.98960 1.21108 0.97234 0.99789 0.92640 0.91158 0.91036 0.91192 0.91049 0.90960 0.91155 0.91201 0.90954 0.91057 0.86024 0.86105 0.90702 0.89149 0.74323 0.83665 0.85129 0.89901 0.76789 0.84437 0.83781 0.85868 0.85945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.86 8.65 101.05 0.87 1.73 16 2 Si 1.06 -3.19 12.32 -169.99 -2.09 -5.29 16 3 C -0.45 0.94 8.53 101.05 0.86 1.80 16 4 C -0.45 1.01 8.53 101.05 0.86 1.88 16 5 C -0.36 0.36 4.59 -39.59 -0.18 0.18 16 6 C -0.09 0.07 9.29 -39.58 -0.37 -0.29 16 7 C -0.11 0.08 9.70 -39.59 -0.38 -0.31 16 8 C -0.09 0.04 5.28 -104.63 -0.55 -0.52 16 9 C 0.16 -0.21 6.35 -5.19 -0.03 -0.24 16 10 N -1.11 0.97 5.99 -11.65 -0.07 0.90 16 11 S 2.70 4.55 5.74 -107.50 -0.62 3.93 16 12 O -0.95 -4.11 16.75 -57.17 -0.96 -5.06 16 13 O -0.95 -4.35 17.28 -57.17 -0.99 -5.34 16 14 C -0.68 -0.77 5.95 -39.58 -0.24 -1.00 16 15 C -0.02 -0.01 9.52 -39.58 -0.38 -0.39 16 16 C -0.14 -0.09 8.67 -39.59 -0.34 -0.43 16 17 C -0.02 -0.01 5.38 -104.62 -0.56 -0.58 16 18 C -0.09 0.12 2.79 36.01 0.10 0.22 16 19 O -0.54 0.31 12.81 -35.23 -0.45 -0.14 16 20 Si 0.94 -1.44 25.14 -169.99 -4.27 -5.71 16 21 H -0.24 0.00 7.04 56.52 0.40 0.39 16 22 H -0.25 0.30 7.11 56.52 0.40 0.70 16 23 H -0.25 0.35 7.11 56.52 0.40 0.75 16 24 C -0.11 -0.07 9.69 -39.59 -0.38 -0.45 16 25 C -0.02 -0.01 9.52 -39.58 -0.38 -0.39 16 26 C -0.11 -0.01 9.70 -39.58 -0.38 -0.39 16 27 C -0.09 0.04 9.29 -39.58 -0.37 -0.33 16 28 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 29 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 30 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 31 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 32 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 33 H 0.07 -0.15 7.69 -51.93 -0.40 -0.55 16 34 H 0.07 -0.17 7.69 -51.93 -0.40 -0.57 16 35 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 36 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 37 H 0.12 -0.31 7.43 -52.49 -0.39 -0.70 16 38 H 0.12 -0.27 8.06 -52.49 -0.42 -0.69 16 39 H 0.07 -0.22 8.09 -51.93 -0.42 -0.64 16 40 H 0.09 -0.14 7.69 -51.93 -0.40 -0.54 16 41 H 0.42 -0.80 8.64 -34.47 -0.30 -1.10 16 42 H 0.15 -0.15 7.61 -52.48 -0.40 -0.54 16 43 H 0.13 -0.13 4.87 -52.48 -0.26 -0.38 16 44 H 0.08 -0.28 7.96 -51.93 -0.41 -0.70 16 45 H 0.38 -1.93 8.74 45.56 0.40 -1.54 16 46 H 0.14 -0.13 8.06 -52.48 -0.42 -0.55 16 47 H 0.14 -0.08 7.62 -52.49 -0.40 -0.47 16 48 H 0.12 -0.10 8.06 -52.48 -0.42 -0.52 16 49 H 0.12 -0.25 7.43 -52.49 -0.39 -0.64 16 LS Contribution 420.09 15.07 6.33 6.33 Total: 0.00 -10.33 420.09 -11.70 -22.03 By element: Atomic # 1 Polarization: -5.41 SS G_CDS: -6.73 Total: -12.14 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -1.85 Total: 0.48 kcal Atomic # 7 Polarization: 0.97 SS G_CDS: -0.07 Total: 0.90 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: -2.40 Total: -10.54 kcal Atomic # 14 Polarization: -4.63 SS G_CDS: -6.37 Total: -11.00 kcal Atomic # 16 Polarization: 4.55 SS G_CDS: -0.62 Total: 3.93 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -10.33 -11.70 -22.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9630768_13421422.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.459 kcal (2) G-P(sol) polarization free energy of solvation -10.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds