Wall clock time and date at job start Mon Mar 8 2021 14:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86303 * 109.47195 * 2 1 4 4 C 1.86300 * 109.46942 * 240.00306 * 2 1 3 5 5 C 1.86802 * 109.47260 * 119.99919 * 2 1 3 6 6 C 1.38235 * 119.99725 * 89.99856 * 5 2 1 7 7 C 1.38234 * 119.99861 * 180.02562 * 6 5 2 8 8 C 1.38230 * 119.99837 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.99912 * 179.97438 * 8 7 6 10 10 N 1.46501 * 109.47282 * 90.00054 * 9 8 7 11 11 S 1.65599 * 120.00418 * 165.00028 * 10 9 8 12 12 O 1.42100 * 106.40241 * 311.46108 * 11 10 9 13 13 O 1.42096 * 106.40379 * 178.53729 * 11 10 9 14 14 C 1.76199 * 107.21658 * 65.00023 * 11 10 9 15 15 C 1.38238 * 120.00251 * 269.72679 * 14 11 10 16 16 C 1.38228 * 120.00121 * 179.76592 * 15 14 11 17 17 C 1.38234 * 120.00010 * 0.50740 * 16 15 14 18 18 C 1.50706 * 119.99834 * 179.72215 * 17 16 15 19 19 O 1.42895 * 109.47144 * 245.02165 * 18 17 16 20 20 Si 1.86301 * 109.47330 * 5.02493 * 18 17 16 21 21 H 1.48498 * 109.46774 * 299.99944 * 20 18 17 22 22 H 1.48503 * 109.46824 * 60.00126 * 20 18 17 23 23 H 1.48495 * 109.46988 * 179.97438 * 20 18 17 24 24 C 1.38229 * 119.99860 * 359.74632 * 17 16 15 25 25 C 1.38234 * 120.00019 * 90.00010 * 14 11 10 26 26 C 1.38228 * 120.00301 * 0.25311 * 8 7 6 27 27 C 1.38230 * 119.99972 * 270.02077 * 5 2 1 28 28 H 1.09005 * 109.46799 * 299.99626 * 1 2 3 29 29 H 1.08991 * 109.47344 * 59.99624 * 1 2 3 30 30 H 1.08997 * 109.47497 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47336 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.46985 * 300.00451 * 3 2 1 33 33 H 1.09000 * 109.46889 * 59.99978 * 3 2 1 34 34 H 1.08997 * 109.46970 * 299.99721 * 4 2 1 35 35 H 1.08999 * 109.47162 * 59.99596 * 4 2 1 36 36 H 1.08999 * 109.46861 * 179.97438 * 4 2 1 37 37 H 1.07999 * 120.00100 * 0.02562 * 6 5 2 38 38 H 1.07999 * 119.99759 * 179.97438 * 7 6 5 39 39 H 1.09005 * 109.47433 * 330.00507 * 9 8 7 40 40 H 1.08996 * 109.47407 * 209.99909 * 9 8 7 41 41 H 0.97001 * 119.99713 * 345.00235 * 10 9 8 42 42 H 1.08004 * 119.99572 * 0.02562 * 15 14 11 43 43 H 1.08004 * 120.00393 * 180.23620 * 16 15 14 44 44 H 1.09005 * 109.46627 * 125.02393 * 18 17 16 45 45 H 0.96705 * 113.99845 * 180.02562 * 19 18 17 46 46 H 1.08005 * 119.99920 * 179.97438 * 24 17 16 47 47 H 1.07999 * 120.00005 * 0.02562 * 25 14 11 48 48 H 1.08004 * 120.00186 * 179.72440 * 26 8 7 49 49 H 1.07997 * 120.00112 * 0.02562 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4839 -0.8782 -1.5212 5 6 2.4857 -0.8806 1.5252 6 6 2.7161 -2.2432 1.4910 7 6 3.1764 -2.8949 2.6198 8 6 3.4058 -2.1841 3.7829 9 6 3.9071 -2.8947 5.0137 10 7 5.3721 -2.8948 5.0150 11 16 6.1990 -3.2662 6.4009 12 8 5.6171 -2.4863 7.4365 13 8 7.5800 -3.2134 6.0706 14 6 5.8434 -4.9486 6.7853 15 6 4.7671 -5.2600 7.5950 16 6 4.4853 -6.5801 7.8927 17 6 5.2860 -7.5883 7.3892 18 6 4.9824 -9.0271 7.7189 19 8 6.0483 -9.5722 8.4990 20 14 3.3935 -9.1206 8.6872 21 1 3.5339 -8.3436 9.9449 22 1 2.2858 -8.5542 7.8764 23 1 3.0941 -10.5384 9.0114 24 6 6.3653 -7.2765 6.5839 25 6 6.6440 -5.9567 6.2819 26 6 3.1700 -0.8226 3.8189 27 6 2.7157 -0.1697 2.6882 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.5740 1.7565 -0.0005 32 1 2.1206 2.2703 -0.8899 33 1 2.1207 2.2703 0.8900 34 1 2.1206 -1.9058 -1.5212 35 1 2.1205 -0.3643 -2.4111 36 1 3.5739 -0.8777 -1.5214 37 1 2.5364 -2.7985 0.5823 38 1 3.3560 -3.9595 2.5931 39 1 3.5438 -3.9225 5.0133 40 1 3.5431 -2.3810 5.9035 41 1 5.8578 -2.6772 4.2040 42 1 4.1439 -4.4721 7.9916 43 1 3.6422 -6.8237 8.5222 44 1 4.8793 -9.5974 6.7957 45 1 5.9202 -10.4979 8.7478 46 1 6.9911 -8.0642 6.1909 47 1 7.4878 -5.7131 5.6533 48 1 3.3450 -0.2680 4.7290 49 1 2.5350 0.8947 2.7152 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_9630768_13421422.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:58:40 Heat of formation + Delta-G solvation = -96.561088 kcal Electronic energy + Delta-G solvation = -29308.240178 eV Core-core repulsion = 25257.445456 eV Total energy + Delta-G solvation = -4050.794723 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 379.123 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.65228 -40.14022 -38.47299 -37.69827 -37.08525 -36.35983 -33.18483 -32.24597 -31.80908 -31.80307 -29.39771 -28.28347 -28.26162 -27.23470 -26.52197 -24.15082 -23.40863 -22.85384 -22.09843 -20.71631 -19.28017 -18.72034 -18.56652 -17.78995 -17.25028 -16.94067 -16.69278 -16.24130 -15.97369 -15.91691 -15.60416 -15.42578 -14.73204 -14.58939 -14.41846 -14.31620 -14.20799 -14.12567 -14.05249 -13.95808 -13.89625 -13.69218 -13.57751 -13.35523 -13.32189 -13.25869 -13.10646 -13.04657 -12.95863 -12.84830 -12.48626 -12.42527 -12.18313 -11.92618 -11.85351 -11.81425 -10.90245 -10.75332 -10.74618 -10.62229 -10.58268 -10.26973 -10.17412 -9.74550 -9.61181 -0.82680 -0.41377 0.15069 0.31165 0.58067 1.08436 1.41783 1.46794 1.86420 1.86846 1.87754 2.04003 2.13671 2.29581 2.64489 2.68637 2.99185 3.17041 3.29094 3.63821 3.69920 3.74233 3.84649 3.96588 4.13986 4.19910 4.26069 4.35733 4.38285 4.40741 4.57963 4.59765 4.77687 4.79410 4.80576 4.85151 4.85888 4.89142 4.90107 4.90229 4.91223 4.91744 4.95326 5.08067 5.22807 5.23379 5.47619 5.60205 5.62644 5.66431 5.68072 5.68539 5.73207 5.93281 6.19120 6.73471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.463 4.463 2 Si 1.127 2.873 3 C -0.465 4.465 4 C -0.461 4.461 5 C -0.376 4.376 6 C -0.102 4.102 7 C -0.122 4.122 8 C -0.100 4.100 9 C 0.151 3.849 10 N -1.102 6.102 11 S 2.714 3.286 12 O -0.982 6.982 13 O -0.985 6.985 14 C -0.679 4.679 15 C -0.024 4.024 16 C -0.156 4.156 17 C -0.029 4.029 18 C -0.091 4.091 19 O -0.561 6.561 20 Si 0.972 3.028 21 H -0.271 1.271 22 H -0.251 1.251 23 H -0.252 1.252 24 C -0.118 4.118 25 C -0.025 4.025 26 C -0.129 4.129 27 C -0.104 4.104 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.138 0.862 38 H 0.135 0.865 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.427 0.573 42 H 0.157 0.843 43 H 0.142 0.858 44 H 0.108 0.892 45 H 0.402 0.598 46 H 0.152 0.848 47 H 0.153 0.847 48 H 0.124 0.876 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.909 -4.380 -4.826 8.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.314 2.686 3 C -0.572 4.572 4 C -0.568 4.568 5 C -0.416 4.416 6 C -0.120 4.120 7 C -0.141 4.141 8 C -0.102 4.102 9 C 0.027 3.973 10 N -0.864 5.864 11 S 2.805 3.195 12 O -0.972 6.972 13 O -0.976 6.976 14 C -0.767 4.767 15 C -0.043 4.043 16 C -0.174 4.174 17 C -0.029 4.029 18 C -0.201 4.201 19 O -0.371 6.371 20 Si 0.796 3.204 21 H -0.196 1.196 22 H -0.174 1.174 23 H -0.176 1.176 24 C -0.136 4.136 25 C -0.045 4.045 26 C -0.148 4.148 27 C -0.122 4.122 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.156 0.844 38 H 0.153 0.847 39 H 0.112 0.888 40 H 0.108 0.892 41 H 0.264 0.736 42 H 0.175 0.825 43 H 0.159 0.841 44 H 0.126 0.874 45 H 0.253 0.747 46 H 0.170 0.830 47 H 0.171 0.829 48 H 0.142 0.858 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.989 -3.358 -3.704 7.062 hybrid contribution 0.289 -1.055 -0.170 1.107 sum -4.699 -4.413 -3.874 7.521 Atomic orbital electron populations 1.26297 1.21741 1.04469 1.04450 0.77145 0.65087 0.64435 0.61934 1.26319 1.06365 1.19778 1.04707 1.26269 1.06396 1.08518 1.15663 1.27915 1.02899 0.99846 1.10909 1.21398 0.97201 0.94978 0.98441 1.21406 0.99300 1.00622 0.92731 1.19811 1.01028 0.94171 0.95175 1.20403 0.77964 1.01669 0.97307 1.55344 1.15461 1.85984 1.29652 1.01063 0.72091 0.73655 0.72663 1.93562 1.78981 1.67975 1.56690 1.93569 1.32533 1.87364 1.84103 1.30818 1.07931 1.24225 1.13735 1.21097 0.93564 0.97679 0.91947 1.21378 1.01441 0.93060 1.01517 1.19977 0.94372 0.94724 0.93839 1.24902 1.01136 0.92481 1.01564 1.86459 1.44339 1.33268 1.73022 0.85352 0.75066 0.80850 0.79115 1.19609 1.17432 1.17599 1.21389 0.97103 0.96882 0.98275 1.21203 0.96270 0.92284 0.94694 1.21421 0.99628 0.94390 0.99382 1.21359 0.97424 1.00573 0.92830 0.91514 0.90830 0.91298 0.91398 0.90822 0.91094 0.90785 0.90828 0.91302 0.84406 0.84699 0.88840 0.89161 0.73626 0.82536 0.84061 0.87432 0.74696 0.83023 0.82916 0.85795 0.84892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.89 8.65 113.37 0.98 2.87 16 2 Si 1.13 -7.18 12.32 68.60 0.85 -6.34 16 3 C -0.46 1.95 8.53 113.37 0.97 2.92 16 4 C -0.46 2.36 8.53 113.37 0.97 3.33 16 5 C -0.38 0.78 4.59 22.27 0.10 0.88 16 6 C -0.10 0.21 9.29 22.27 0.21 0.41 16 7 C -0.12 0.20 9.70 22.27 0.22 0.41 16 8 C -0.10 0.05 5.28 -19.87 -0.10 -0.06 16 9 C 0.15 -0.36 6.35 85.63 0.54 0.18 16 10 N -1.10 1.24 5.99 -190.79 -1.14 0.09 16 11 S 2.71 12.06 5.74 -56.49 -0.32 11.74 16 12 O -0.98 -9.78 16.75 -128.00 -2.14 -11.93 16 13 O -0.99 -10.27 17.28 -128.00 -2.21 -12.48 16 14 C -0.68 -1.92 5.95 22.27 0.13 -1.79 16 15 C -0.02 -0.04 9.52 22.27 0.21 0.17 16 16 C -0.16 -0.20 8.67 22.27 0.19 -0.01 16 17 C -0.03 -0.03 5.38 -19.87 -0.11 -0.13 16 18 C -0.09 0.33 2.79 71.24 0.20 0.53 16 19 O -0.56 1.13 12.81 -148.98 -1.91 -0.78 16 20 Si 0.97 -3.41 25.14 68.60 1.72 -1.68 16 21 H -0.27 -0.19 7.04 99.48 0.70 0.51 16 22 H -0.25 0.75 7.11 99.48 0.71 1.46 16 23 H -0.25 0.93 7.11 99.48 0.71 1.63 16 24 C -0.12 -0.11 9.69 22.27 0.22 0.11 16 25 C -0.03 -0.05 9.52 22.27 0.21 0.16 16 26 C -0.13 -0.11 9.70 22.27 0.22 0.10 16 27 C -0.10 0.04 9.29 22.27 0.21 0.25 16 28 H 0.07 -0.21 7.96 -2.38 -0.02 -0.23 16 29 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 30 H 0.07 -0.26 7.96 -2.39 -0.02 -0.27 16 31 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 32 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 33 H 0.07 -0.30 7.69 -2.39 -0.02 -0.32 16 34 H 0.07 -0.43 7.69 -2.39 -0.02 -0.45 16 35 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 36 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 37 H 0.14 -0.82 7.43 -2.91 -0.02 -0.85 16 38 H 0.14 -0.70 8.06 -2.91 -0.02 -0.72 16 39 H 0.09 -0.58 8.09 -2.38 -0.02 -0.60 16 40 H 0.09 -0.22 7.69 -2.39 -0.02 -0.23 16 41 H 0.43 -1.36 8.64 -96.74 -0.84 -2.19 16 42 H 0.16 -0.22 7.61 -2.91 -0.02 -0.24 16 43 H 0.14 -0.25 4.87 -2.91 -0.01 -0.26 16 44 H 0.11 -0.93 7.96 -2.38 -0.02 -0.95 16 45 H 0.40 -4.46 8.74 -74.05 -0.65 -5.11 16 46 H 0.15 -0.40 8.06 -2.91 -0.02 -0.43 16 47 H 0.15 -0.09 7.62 -2.91 -0.02 -0.12 16 48 H 0.12 -0.04 8.06 -2.91 -0.02 -0.06 16 49 H 0.13 -0.48 7.43 -2.91 -0.02 -0.50 16 Total: 0.00 -23.04 420.09 0.43 -22.61 By element: Atomic # 1 Polarization: -11.81 SS G_CDS: 0.23 Total: -11.58 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: 5.36 Total: 10.34 kcal Atomic # 7 Polarization: 1.24 SS G_CDS: -1.14 Total: 0.09 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -6.26 Total: -25.18 kcal Atomic # 14 Polarization: -10.59 SS G_CDS: 2.57 Total: -8.02 kcal Atomic # 16 Polarization: 12.06 SS G_CDS: -0.32 Total: 11.74 kcal Total: -23.04 0.43 -22.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9630768_13421422.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.951 kcal (2) G-P(sol) polarization free energy of solvation -23.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds