Wall clock time and date at job start Mon Mar 8 2021 14:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86305 * 109.46980 * 2 1 4 4 C 1.86296 * 109.47367 * 240.00054 * 2 1 3 5 5 C 1.86803 * 109.46852 * 119.99832 * 2 1 3 6 6 C 1.38234 * 119.99940 * 90.00443 * 5 2 1 7 7 C 1.38238 * 119.99675 * 180.28096 * 6 5 2 8 8 C 1.38228 * 120.00120 * 359.47825 * 7 6 5 9 9 C 1.50698 * 120.00200 * 180.23540 * 8 7 6 10 10 N 1.46501 * 109.47472 * 270.28569 * 9 8 7 11 11 S 1.65594 * 120.00199 * 165.00023 * 10 9 8 12 12 O 1.42101 * 106.40287 * 178.53998 * 11 10 9 13 13 O 1.42105 * 106.40210 * 311.45396 * 11 10 9 14 14 C 1.76191 * 107.22095 * 64.99700 * 11 10 9 15 15 C 1.33392 * 125.20382 * 179.71864 * 14 11 10 16 16 C 1.50704 * 122.53928 * 0.02562 * 15 14 11 17 17 O 1.42896 * 109.46833 * 74.99901 * 16 15 14 18 18 Si 1.86296 * 109.47060 * 194.99937 * 16 15 14 19 19 H 1.48507 * 109.47183 * 299.99815 * 18 16 15 20 20 H 1.48505 * 109.47262 * 59.99905 * 18 16 15 21 21 H 1.48495 * 109.47226 * 179.97438 * 18 16 15 22 22 C 1.38425 * 114.91991 * 179.86055 * 15 14 11 23 23 C 1.33388 * 114.92167 * 0.42883 * 22 15 14 24 24 S 1.75881 * 125.20453 * 0.02562 * 14 11 10 25 25 C 1.38234 * 120.00000 * 0.52176 * 8 7 6 26 26 C 1.38234 * 119.99820 * 270.02211 * 5 2 1 27 27 H 1.08992 * 109.47179 * 300.00318 * 1 2 3 28 28 H 1.09007 * 109.47049 * 59.99985 * 1 2 3 29 29 H 1.08994 * 109.47120 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46698 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47017 * 299.99765 * 3 2 1 32 32 H 1.09004 * 109.46851 * 60.00120 * 3 2 1 33 33 H 1.09006 * 109.46796 * 300.00138 * 4 2 1 34 34 H 1.08998 * 109.47288 * 59.99832 * 4 2 1 35 35 H 1.09002 * 109.47253 * 180.02562 * 4 2 1 36 36 H 1.08002 * 119.99744 * 359.97438 * 6 5 2 37 37 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 38 38 H 1.09007 * 109.46985 * 30.28368 * 9 8 7 39 39 H 1.08998 * 109.47169 * 150.27754 * 9 8 7 40 40 H 0.97000 * 119.99856 * 344.99374 * 10 9 8 41 41 H 1.08999 * 109.46644 * 314.99478 * 16 15 14 42 42 H 0.96705 * 113.99405 * 179.97438 * 17 16 15 43 43 H 1.08005 * 122.53888 * 180.20241 * 22 15 14 44 44 H 1.07998 * 125.20298 * 179.79238 * 23 22 15 45 45 H 1.08001 * 120.00310 * 179.72161 * 25 8 7 46 46 H 1.07997 * 120.00460 * 359.97438 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4856 -0.8806 1.5253 6 6 2.7160 -2.2431 1.4911 7 6 3.1712 -2.8957 2.6215 8 6 3.4062 -2.1840 3.7829 9 6 3.9075 -2.8945 5.0138 10 7 2.7675 -3.3550 5.8102 11 16 2.9932 -4.4754 7.0085 12 8 1.7217 -4.6837 7.6079 13 8 3.7642 -5.5237 6.4376 14 6 4.0067 -3.7258 8.2394 15 6 4.4059 -4.3126 9.3688 16 6 4.0228 -5.7253 9.7276 17 8 4.7849 -6.6406 8.9380 18 14 4.3708 -6.0236 11.5333 19 1 5.8178 -5.8206 11.7986 20 1 3.5789 -5.0723 12.3538 21 1 3.9928 -7.4154 11.8870 22 6 5.2017 -3.5269 10.1847 23 6 5.4413 -2.2990 9.7220 24 16 4.6406 -2.0866 8.1705 25 6 3.1758 -0.8214 3.8172 26 6 2.7155 -0.1696 2.6883 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.5740 1.7565 0.0005 31 1 2.1207 2.2703 -0.8900 32 1 2.1206 2.2703 0.8900 33 1 2.1207 -1.9059 -1.5211 34 1 2.1208 -0.3644 -2.4111 35 1 3.5741 -0.8786 -1.5208 36 1 2.5357 -2.7986 0.5826 37 1 3.3471 -3.9610 2.5960 38 1 4.5134 -3.7509 4.7175 39 1 4.5127 -2.2094 5.6076 40 1 1.8804 -3.0035 5.6358 41 1 2.9607 -5.8742 9.5329 42 1 4.5901 -7.5708 9.1166 43 1 5.5955 -3.8801 11.1263 44 1 6.0363 -1.5500 10.2233 45 1 3.3551 -0.2660 4.7259 46 1 2.5356 0.8949 2.7150 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_9630768_13652106.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:58:54 Heat of formation + Delta-G solvation = -85.424852 kcal Electronic energy + Delta-G solvation = -28392.924838 eV Core-core repulsion = 24431.765265 eV Total energy + Delta-G solvation = -3961.159573 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 385.080 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.25170 -39.92930 -38.08843 -37.19338 -36.75382 -36.45946 -31.90759 -31.89973 -31.51256 -29.57221 -28.46947 -28.43397 -28.08668 -26.62587 -24.21562 -23.49859 -22.25052 -21.59578 -19.84142 -19.65025 -18.64779 -18.37188 -17.64602 -17.34514 -16.95710 -16.37072 -16.14711 -15.93598 -15.90931 -15.63208 -14.90381 -14.60425 -14.57686 -14.38538 -14.26523 -14.17887 -14.14571 -14.07957 -13.85956 -13.75970 -13.67654 -13.32003 -13.28653 -13.18334 -13.12578 -13.00616 -12.89927 -12.70226 -12.59045 -12.49509 -12.29724 -12.15415 -12.00148 -11.62319 -11.06364 -10.93114 -10.88405 -10.76362 -10.47113 -10.40069 -9.81282 -9.70798 -9.65281 -0.68105 -0.65374 0.17654 0.26204 0.51401 0.58083 0.99208 1.20555 1.37663 1.45025 1.68124 1.80440 1.82338 1.86534 2.04325 2.51835 2.64321 2.91101 3.20382 3.53543 3.67141 3.78115 3.82393 3.86151 4.04908 4.09255 4.19453 4.23680 4.28887 4.48200 4.61458 4.65395 4.67630 4.69364 4.70190 4.72991 4.73777 4.74582 4.75108 4.85226 4.98076 5.01651 5.13630 5.37719 5.43808 5.47830 5.51850 5.60174 5.60545 5.81803 6.08993 6.51657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.060 2.940 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.363 4.363 6 C -0.089 4.089 7 C -0.110 4.110 8 C -0.093 4.093 9 C 0.153 3.847 10 N -1.115 6.115 11 S 2.715 3.285 12 O -0.949 6.949 13 O -0.924 6.924 14 C -0.766 4.766 15 C 0.052 3.948 16 C -0.114 4.114 17 O -0.527 6.527 18 Si 0.960 3.040 19 H -0.242 1.242 20 H -0.244 1.244 21 H -0.246 1.246 22 C -0.163 4.163 23 C -0.162 4.162 24 S 0.204 5.796 25 C -0.114 4.114 26 C -0.090 4.090 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.095 0.905 39 H 0.073 0.927 40 H 0.424 0.576 41 H 0.086 0.914 42 H 0.386 0.614 43 H 0.153 0.847 44 H 0.180 0.820 45 H 0.122 0.878 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.794 3.944 -0.348 4.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.252 2.748 3 C -0.557 4.557 4 C -0.558 4.558 5 C -0.405 4.405 6 C -0.107 4.107 7 C -0.129 4.129 8 C -0.095 4.095 9 C 0.028 3.972 10 N -0.877 5.877 11 S 2.799 3.201 12 O -0.939 6.939 13 O -0.914 6.914 14 C -0.965 4.965 15 C 0.035 3.965 16 C -0.226 4.226 17 O -0.334 6.334 18 Si 0.779 3.221 19 H -0.166 1.166 20 H -0.167 1.167 21 H -0.169 1.169 22 C -0.193 4.193 23 C -0.299 4.299 24 S 0.470 5.530 25 C -0.133 4.133 26 C -0.108 4.108 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.141 0.859 37 H 0.142 0.858 38 H 0.113 0.887 39 H 0.091 0.909 40 H 0.259 0.741 41 H 0.104 0.896 42 H 0.235 0.765 43 H 0.171 0.829 44 H 0.197 0.803 45 H 0.140 0.860 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.027 4.656 -0.599 4.805 hybrid contribution -0.027 -0.800 1.241 1.477 sum 0.999 3.856 0.642 4.035 Atomic orbital electron populations 1.26130 1.20488 1.04603 1.04491 0.78172 0.66834 0.66078 0.63739 1.26140 1.06461 1.18584 1.04561 1.26143 1.06480 1.08083 1.15093 1.27456 1.03209 0.99560 1.10257 1.21109 0.97203 0.94629 0.97796 1.21226 0.98903 0.99985 0.92769 1.19681 1.01322 0.94016 0.94436 1.20351 0.87150 0.99384 0.90308 1.55670 1.17301 1.64592 1.50121 1.01594 0.73338 0.72748 0.72380 1.93629 1.39359 1.83819 1.77119 1.93656 1.71980 1.49965 1.75770 1.35702 1.28410 1.11087 1.21343 1.17871 0.92893 0.94459 0.91275 1.24968 0.98846 0.88280 1.10494 1.86614 1.64098 1.19007 1.63677 0.85552 0.81907 0.82091 0.72545 1.16562 1.16670 1.16932 1.20276 1.02003 0.94281 1.02766 1.26116 1.03630 1.00875 0.99316 1.83994 1.44471 1.06706 1.17796 1.21167 0.99497 0.93802 0.98806 1.21081 0.97336 0.99728 0.92675 0.91180 0.91041 0.91152 0.91051 0.90954 0.91192 0.91151 0.90960 0.91039 0.85900 0.85815 0.88722 0.90918 0.74090 0.89602 0.76536 0.82943 0.80281 0.86033 0.85961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.80 8.65 101.05 0.87 1.67 16 2 Si 1.06 -3.12 12.32 -169.99 -2.09 -5.21 16 3 C -0.45 1.01 8.53 101.05 0.86 1.87 16 4 C -0.45 0.93 8.53 101.05 0.86 1.79 16 5 C -0.36 0.32 4.59 -39.58 -0.18 0.14 16 6 C -0.09 0.02 9.29 -39.58 -0.37 -0.35 16 7 C -0.11 -0.04 9.70 -39.58 -0.38 -0.42 16 8 C -0.09 0.00 5.28 -104.63 -0.55 -0.56 16 9 C 0.15 -0.04 6.09 -5.19 -0.03 -0.08 16 10 N -1.11 -0.34 5.80 -11.65 -0.07 -0.41 16 11 S 2.72 8.91 5.07 -107.50 -0.55 8.37 16 12 O -0.95 -5.20 17.48 -57.17 -1.00 -6.20 16 13 O -0.92 -5.37 16.93 -59.41 -1.01 -6.37 16 14 C -0.77 -1.98 6.46 29.04 0.19 -1.79 16 15 C 0.05 0.14 5.17 -106.24 -0.55 -0.41 16 16 C -0.11 -0.21 2.32 36.01 0.08 -0.12 16 17 O -0.53 -1.16 12.30 -35.88 -0.44 -1.60 16 18 Si 0.96 -0.16 25.72 -169.99 -4.37 -4.53 16 19 H -0.24 -0.01 6.84 56.52 0.39 0.37 16 20 H -0.24 -0.04 7.11 56.52 0.40 0.36 16 21 H -0.25 0.10 7.11 56.52 0.40 0.50 16 22 C -0.16 -0.14 8.74 -41.21 -0.36 -0.50 16 23 C -0.16 0.10 11.23 29.04 0.33 0.43 16 24 S 0.20 -0.05 21.09 -107.50 -2.27 -2.31 16 25 C -0.11 0.06 9.70 -39.58 -0.38 -0.33 16 26 C -0.09 0.07 9.29 -39.58 -0.37 -0.30 16 27 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 28 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 29 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 30 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 31 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 32 H 0.07 -0.17 7.69 -51.93 -0.40 -0.57 16 33 H 0.07 -0.15 7.69 -51.93 -0.40 -0.55 16 34 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 35 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 36 H 0.12 -0.24 7.43 -52.49 -0.39 -0.63 16 37 H 0.12 -0.05 8.06 -52.48 -0.42 -0.48 16 38 H 0.09 -0.01 7.70 -51.93 -0.40 -0.41 16 39 H 0.07 -0.13 6.20 -51.93 -0.32 -0.45 16 40 H 0.42 -0.48 8.64 -34.46 -0.30 -0.78 16 41 H 0.09 0.11 7.23 -51.93 -0.38 -0.27 16 42 H 0.39 -0.96 8.74 45.56 0.40 -0.56 16 43 H 0.15 -0.14 5.56 -52.48 -0.29 -0.44 16 44 H 0.18 -0.67 8.06 -52.49 -0.42 -1.09 16 45 H 0.12 -0.27 8.06 -52.49 -0.42 -0.69 16 46 H 0.12 -0.31 7.43 -52.49 -0.39 -0.70 16 LS Contribution 405.56 15.07 6.11 6.11 Total: 0.00 -9.80 405.56 -11.50 -21.31 By element: Atomic # 1 Polarization: -4.34 SS G_CDS: -5.84 Total: -10.18 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: 0.02 Total: 1.04 kcal Atomic # 7 Polarization: -0.34 SS G_CDS: -0.07 Total: -0.41 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: -2.45 Total: -14.17 kcal Atomic # 14 Polarization: -3.28 SS G_CDS: -6.47 Total: -9.75 kcal Atomic # 16 Polarization: 8.86 SS G_CDS: -2.81 Total: 6.05 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -9.80 -11.50 -21.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9630768_13652106.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.119 kcal (2) G-P(sol) polarization free energy of solvation -9.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds