Wall clock time and date at job start Mon Mar 8 2021 14:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86305 * 109.46980 * 2 1 4 4 C 1.86296 * 109.47367 * 240.00054 * 2 1 3 5 5 C 1.86803 * 109.46852 * 119.99832 * 2 1 3 6 6 C 1.38234 * 119.99940 * 90.00443 * 5 2 1 7 7 C 1.38238 * 119.99675 * 180.28096 * 6 5 2 8 8 C 1.38228 * 120.00120 * 359.47825 * 7 6 5 9 9 C 1.50698 * 120.00200 * 180.23540 * 8 7 6 10 10 N 1.46501 * 109.47472 * 270.28569 * 9 8 7 11 11 S 1.65594 * 120.00199 * 165.00023 * 10 9 8 12 12 O 1.42101 * 106.40287 * 178.53998 * 11 10 9 13 13 O 1.42105 * 106.40210 * 311.45396 * 11 10 9 14 14 C 1.76191 * 107.22095 * 64.99700 * 11 10 9 15 15 C 1.33392 * 125.20382 * 179.71864 * 14 11 10 16 16 C 1.50704 * 122.53928 * 0.02562 * 15 14 11 17 17 O 1.42896 * 109.46833 * 74.99901 * 16 15 14 18 18 Si 1.86296 * 109.47060 * 194.99937 * 16 15 14 19 19 H 1.48507 * 109.47183 * 299.99815 * 18 16 15 20 20 H 1.48505 * 109.47262 * 59.99905 * 18 16 15 21 21 H 1.48495 * 109.47226 * 179.97438 * 18 16 15 22 22 C 1.38425 * 114.91991 * 179.86055 * 15 14 11 23 23 C 1.33388 * 114.92167 * 0.42883 * 22 15 14 24 24 S 1.75881 * 125.20453 * 0.02562 * 14 11 10 25 25 C 1.38234 * 120.00000 * 0.52176 * 8 7 6 26 26 C 1.38234 * 119.99820 * 270.02211 * 5 2 1 27 27 H 1.08992 * 109.47179 * 300.00318 * 1 2 3 28 28 H 1.09007 * 109.47049 * 59.99985 * 1 2 3 29 29 H 1.08994 * 109.47120 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46698 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47017 * 299.99765 * 3 2 1 32 32 H 1.09004 * 109.46851 * 60.00120 * 3 2 1 33 33 H 1.09006 * 109.46796 * 300.00138 * 4 2 1 34 34 H 1.08998 * 109.47288 * 59.99832 * 4 2 1 35 35 H 1.09002 * 109.47253 * 180.02562 * 4 2 1 36 36 H 1.08002 * 119.99744 * 359.97438 * 6 5 2 37 37 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 38 38 H 1.09007 * 109.46985 * 30.28368 * 9 8 7 39 39 H 1.08998 * 109.47169 * 150.27754 * 9 8 7 40 40 H 0.97000 * 119.99856 * 344.99374 * 10 9 8 41 41 H 1.08999 * 109.46644 * 314.99478 * 16 15 14 42 42 H 0.96705 * 113.99405 * 179.97438 * 17 16 15 43 43 H 1.08005 * 122.53888 * 180.20241 * 22 15 14 44 44 H 1.07998 * 125.20298 * 179.79238 * 23 22 15 45 45 H 1.08001 * 120.00310 * 179.72161 * 25 8 7 46 46 H 1.07997 * 120.00460 * 359.97438 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4856 -0.8806 1.5253 6 6 2.7160 -2.2431 1.4911 7 6 3.1712 -2.8957 2.6215 8 6 3.4062 -2.1840 3.7829 9 6 3.9075 -2.8945 5.0138 10 7 2.7675 -3.3550 5.8102 11 16 2.9932 -4.4754 7.0085 12 8 1.7217 -4.6837 7.6079 13 8 3.7642 -5.5237 6.4376 14 6 4.0067 -3.7258 8.2394 15 6 4.4059 -4.3126 9.3688 16 6 4.0228 -5.7253 9.7276 17 8 4.7849 -6.6406 8.9380 18 14 4.3708 -6.0236 11.5333 19 1 5.8178 -5.8206 11.7986 20 1 3.5789 -5.0723 12.3538 21 1 3.9928 -7.4154 11.8870 22 6 5.2017 -3.5269 10.1847 23 6 5.4413 -2.2990 9.7220 24 16 4.6406 -2.0866 8.1705 25 6 3.1758 -0.8214 3.8172 26 6 2.7155 -0.1696 2.6883 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.5740 1.7565 0.0005 31 1 2.1207 2.2703 -0.8900 32 1 2.1206 2.2703 0.8900 33 1 2.1207 -1.9059 -1.5211 34 1 2.1208 -0.3644 -2.4111 35 1 3.5741 -0.8786 -1.5208 36 1 2.5357 -2.7986 0.5826 37 1 3.3471 -3.9610 2.5960 38 1 4.5134 -3.7509 4.7175 39 1 4.5127 -2.2094 5.6076 40 1 1.8804 -3.0035 5.6358 41 1 2.9607 -5.8742 9.5329 42 1 4.5901 -7.5708 9.1166 43 1 5.5955 -3.8801 11.1263 44 1 6.0363 -1.5500 10.2233 45 1 3.3551 -0.2660 4.7259 46 1 2.5356 0.8949 2.7150 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_9630768_13652106.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:58:53 Heat of formation + Delta-G solvation = -84.060036 kcal Electronic energy + Delta-G solvation = -28392.865655 eV Core-core repulsion = 24431.765265 eV Total energy + Delta-G solvation = -3961.100390 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 385.080 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.19119 -39.95540 -38.41977 -37.28701 -37.06908 -36.49991 -31.87964 -31.82549 -31.52982 -29.39464 -28.27637 -28.25746 -28.16524 -26.61744 -24.22379 -23.42579 -22.21510 -21.70396 -19.98856 -19.72704 -18.74922 -18.45034 -17.74344 -17.39489 -17.02222 -16.34626 -16.20813 -15.97121 -15.94809 -15.66306 -14.92149 -14.62688 -14.55903 -14.29931 -14.24585 -14.15310 -14.02300 -13.92797 -13.78730 -13.69506 -13.64178 -13.38500 -13.31413 -13.22201 -13.09896 -13.08429 -12.95130 -12.74986 -12.67722 -12.48930 -12.37983 -12.14175 -11.90795 -11.62175 -10.90246 -10.86289 -10.73992 -10.71544 -10.52636 -10.44142 -9.75859 -9.65967 -9.62372 -0.88804 -0.70605 0.16169 0.29166 0.56840 0.60162 0.98823 1.18651 1.41716 1.48370 1.80724 1.83350 1.87252 2.04661 2.14154 2.42583 2.68789 2.96981 3.21107 3.42536 3.60546 3.76406 3.83693 3.90365 4.05337 4.16917 4.23554 4.28091 4.32426 4.57898 4.62224 4.68436 4.77138 4.85383 4.86125 4.86257 4.89676 4.90441 4.92209 4.92400 5.00967 5.05384 5.21958 5.45324 5.60511 5.61883 5.65558 5.68956 5.73451 5.82123 6.17331 6.63227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.465 4.465 2 Si 1.128 2.872 3 C -0.460 4.460 4 C -0.465 4.465 5 C -0.374 4.374 6 C -0.103 4.103 7 C -0.129 4.129 8 C -0.101 4.101 9 C 0.151 3.849 10 N -1.105 6.105 11 S 2.727 3.273 12 O -0.980 6.980 13 O -0.959 6.959 14 C -0.796 4.796 15 C 0.034 3.966 16 C -0.135 4.135 17 O -0.548 6.548 18 Si 0.999 3.001 19 H -0.243 1.243 20 H -0.248 1.248 21 H -0.245 1.245 22 C -0.184 4.184 23 C -0.150 4.150 24 S 0.235 5.765 25 C -0.121 4.121 26 C -0.101 4.101 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.134 0.866 37 H 0.122 0.878 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.430 0.570 41 H 0.079 0.921 42 H 0.401 0.599 43 H 0.168 0.832 44 H 0.214 0.786 45 H 0.139 0.861 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.442 5.691 0.154 5.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.571 4.571 2 Si 1.315 2.685 3 C -0.568 4.568 4 C -0.572 4.572 5 C -0.414 4.414 6 C -0.121 4.121 7 C -0.148 4.148 8 C -0.103 4.103 9 C 0.026 3.974 10 N -0.869 5.869 11 S 2.814 3.186 12 O -0.970 6.970 13 O -0.948 6.948 14 C -0.998 4.998 15 C 0.016 3.984 16 C -0.245 4.245 17 O -0.357 6.357 18 Si 0.817 3.183 19 H -0.166 1.166 20 H -0.171 1.171 21 H -0.168 1.168 22 C -0.214 4.214 23 C -0.287 4.287 24 S 0.501 5.499 25 C -0.139 4.139 26 C -0.118 4.118 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.152 0.848 37 H 0.140 0.860 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.267 0.733 41 H 0.097 0.903 42 H 0.252 0.748 43 H 0.185 0.815 44 H 0.231 0.769 45 H 0.156 0.844 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.647 6.372 -0.127 6.582 hybrid contribution -0.215 -1.281 1.035 1.661 sum 1.431 5.091 0.908 5.366 Atomic orbital electron populations 1.26314 1.21884 1.04327 1.04543 0.77139 0.64973 0.64727 0.61686 1.26257 1.06460 1.19173 1.04887 1.26318 1.06435 1.08426 1.15994 1.27958 1.02672 0.99472 1.11343 1.21357 0.97339 0.95268 0.98100 1.21404 0.99640 1.00248 0.93466 1.19723 1.01853 0.94451 0.94232 1.20461 0.86908 0.99522 0.90523 1.55410 1.18005 1.64065 1.49422 1.00820 0.72538 0.72802 0.72442 1.93576 1.40927 1.84673 1.77845 1.93606 1.72474 1.52126 1.76612 1.35523 1.29683 1.13117 1.21432 1.18259 0.93271 0.95124 0.91703 1.25346 0.98540 0.88216 1.12402 1.86561 1.64395 1.20345 1.64444 0.84995 0.81437 0.81790 0.70068 1.16595 1.17144 1.16799 1.20473 1.02549 0.94819 1.03513 1.26614 1.02470 1.00954 0.98712 1.83786 1.43637 1.04434 1.18023 1.21430 0.99153 0.93635 0.99718 1.21415 0.97023 1.00802 0.92589 0.91305 0.90822 0.91614 0.91188 0.90814 0.90736 0.91148 0.90803 0.91286 0.84783 0.85953 0.89362 0.89291 0.73255 0.90263 0.74781 0.81465 0.76908 0.84358 0.84100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.76 8.65 113.37 0.98 2.74 16 2 Si 1.13 -7.19 12.32 68.60 0.85 -6.35 16 3 C -0.46 2.48 8.53 113.37 0.97 3.45 16 4 C -0.46 1.99 8.53 113.37 0.97 2.95 16 5 C -0.37 0.74 4.59 22.27 0.10 0.84 16 6 C -0.10 0.00 9.29 22.27 0.21 0.20 16 7 C -0.13 -0.24 9.70 22.27 0.22 -0.02 16 8 C -0.10 -0.07 5.28 -19.87 -0.10 -0.17 16 9 C 0.15 0.04 6.09 85.63 0.52 0.56 16 10 N -1.10 -2.12 5.80 -190.79 -1.11 -3.22 16 11 S 2.73 23.34 5.07 -56.49 -0.29 23.05 16 12 O -0.98 -13.08 17.48 -128.00 -2.24 -15.32 16 13 O -0.96 -13.59 16.93 -125.86 -2.13 -15.72 16 14 C -0.80 -4.90 6.46 66.72 0.43 -4.47 16 15 C 0.03 0.21 5.17 -20.92 -0.11 0.10 16 16 C -0.14 -0.68 2.32 71.24 0.17 -0.51 16 17 O -0.55 -3.38 12.30 -148.36 -1.82 -5.20 16 18 Si 1.00 -0.26 25.72 68.60 1.76 1.50 16 19 H -0.24 0.12 6.84 99.48 0.68 0.80 16 20 H -0.25 -0.03 7.11 99.48 0.71 0.67 16 21 H -0.24 0.23 7.11 99.48 0.71 0.94 16 22 C -0.18 -0.23 8.74 21.22 0.19 -0.04 16 23 C -0.15 0.42 11.23 66.72 0.75 1.17 16 24 S 0.23 -0.25 21.09 -56.49 -1.19 -1.45 16 25 C -0.12 0.16 9.70 22.27 0.22 0.38 16 26 C -0.10 0.21 9.29 22.27 0.21 0.41 16 27 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 28 H 0.07 -0.31 7.96 -2.38 -0.02 -0.33 16 29 H 0.06 -0.18 7.96 -2.39 -0.02 -0.20 16 30 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 31 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 32 H 0.07 -0.45 7.69 -2.38 -0.02 -0.47 16 33 H 0.07 -0.30 7.69 -2.38 -0.02 -0.32 16 34 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 35 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 36 H 0.13 -0.44 7.43 -2.91 -0.02 -0.46 16 37 H 0.12 0.13 8.06 -2.91 -0.02 0.10 16 38 H 0.09 0.13 7.70 -2.38 -0.02 0.11 16 39 H 0.09 -0.31 6.20 -2.39 -0.01 -0.32 16 40 H 0.43 -0.44 8.64 -96.75 -0.84 -1.27 16 41 H 0.08 0.40 7.23 -2.39 -0.02 0.38 16 42 H 0.40 -1.27 8.74 -74.05 -0.65 -1.92 16 43 H 0.17 -0.45 5.56 -2.91 -0.02 -0.47 16 44 H 0.21 -2.22 8.06 -2.91 -0.02 -2.25 16 45 H 0.14 -0.76 8.06 -2.91 -0.02 -0.78 16 46 H 0.14 -0.90 7.43 -2.91 -0.02 -0.92 16 Total: 0.00 -23.22 405.56 -0.20 -23.43 By element: Atomic # 1 Polarization: -8.59 SS G_CDS: 0.26 Total: -8.33 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: 5.70 Total: 7.61 kcal Atomic # 7 Polarization: -2.12 SS G_CDS: -1.11 Total: -3.22 kcal Atomic # 8 Polarization: -30.05 SS G_CDS: -6.19 Total: -36.25 kcal Atomic # 14 Polarization: -7.46 SS G_CDS: 2.61 Total: -4.85 kcal Atomic # 16 Polarization: 23.08 SS G_CDS: -1.48 Total: 21.61 kcal Total: -23.22 -0.20 -23.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9630768_13652106.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.632 kcal (2) G-P(sol) polarization free energy of solvation -23.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds