Wall clock time and date at job start Mon Mar 8 2021 14:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86293 * 109.47357 * 2 1 4 4 C 1.86299 * 109.47005 * 239.99735 * 2 1 3 5 5 C 1.86801 * 109.46816 * 120.00042 * 2 1 3 6 6 C 1.38231 * 120.00380 * 89.99656 * 5 2 1 7 7 C 1.38234 * 120.00235 * 180.02562 * 6 5 2 8 8 C 1.38228 * 119.99982 * 0.02562 * 7 6 5 9 9 C 1.50706 * 120.00101 * 179.97438 * 8 7 6 10 10 N 1.46499 * 109.46932 * 89.99552 * 9 8 7 11 11 S 1.65598 * 119.99897 * 165.48334 * 10 9 8 12 12 O 1.42101 * 106.40495 * 309.62873 * 11 10 9 13 13 O 1.42094 * 106.40394 * 176.70780 * 11 10 9 14 14 C 1.76201 * 107.21910 * 63.16699 * 11 10 9 15 15 C 1.33391 * 122.53879 * 67.29952 * 14 11 10 16 16 C 1.50700 * 125.20137 * 359.97438 * 15 14 11 17 17 O 1.42901 * 109.47596 * 318.23662 * 16 15 14 18 18 Si 1.86303 * 109.47124 * 198.23484 * 16 15 14 19 19 H 1.48493 * 109.46859 * 60.00498 * 18 16 15 20 20 H 1.48503 * 109.46843 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47024 * 300.00237 * 18 16 15 22 22 S 1.75879 * 109.59563 * 179.97438 * 15 14 11 23 23 C 1.75885 * 90.97173 * 359.97438 * 22 15 14 24 24 C 1.33393 * 109.59297 * 0.02562 * 23 22 15 25 25 C 1.38237 * 120.00070 * 0.24410 * 8 7 6 26 26 C 1.38231 * 119.99685 * 359.50217 * 25 8 7 27 27 H 1.08998 * 109.47154 * 300.00744 * 1 2 3 28 28 H 1.09000 * 109.46725 * 60.00107 * 1 2 3 29 29 H 1.08998 * 109.47652 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47489 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47116 * 299.99653 * 3 2 1 32 32 H 1.09011 * 109.47247 * 59.99571 * 3 2 1 33 33 H 1.09000 * 109.47442 * 299.99775 * 4 2 1 34 34 H 1.09000 * 109.47251 * 60.00479 * 4 2 1 35 35 H 1.09006 * 109.47008 * 180.02562 * 4 2 1 36 36 H 1.08000 * 120.00095 * 0.02562 * 6 5 2 37 37 H 1.07998 * 120.00011 * 179.97438 * 7 6 5 38 38 H 1.09003 * 109.47031 * 329.99707 * 9 8 7 39 39 H 1.08995 * 109.47009 * 209.99917 * 9 8 7 40 40 H 0.97003 * 120.00419 * 345.48551 * 10 9 8 41 41 H 1.09004 * 109.47034 * 78.23765 * 16 15 14 42 42 H 0.96693 * 114.00357 * 179.97438 * 17 16 15 43 43 H 1.07993 * 125.20255 * 179.97438 * 23 22 15 44 44 H 1.07994 * 122.54148 * 179.97438 * 24 23 22 45 45 H 1.08005 * 119.99967 * 179.72686 * 25 8 7 46 46 H 1.08000 * 119.99839 * 180.23369 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4856 -0.8806 1.5252 6 6 2.7159 -2.2432 1.4911 7 6 3.1761 -2.8949 2.6200 8 6 3.4055 -2.1841 3.7831 9 6 3.9067 -2.8947 5.0140 10 7 5.3717 -2.8949 5.0153 11 16 6.1984 -3.2780 6.3980 12 8 5.6453 -2.4750 7.4318 13 8 7.5779 -3.2647 6.0575 14 6 5.8007 -4.9473 6.7980 15 6 6.1837 -5.9771 6.0417 16 6 6.9880 -5.8705 4.7717 17 8 6.5089 -4.7706 3.9953 18 14 6.8129 -7.4452 3.7917 19 1 5.3830 -7.6624 3.4552 20 1 7.6060 -7.3403 2.5406 21 1 7.3108 -8.5882 4.5985 22 16 5.6066 -7.4784 6.7533 23 6 4.8560 -6.5972 8.0775 24 6 5.0680 -5.2894 7.9215 25 6 3.1699 -0.8225 3.8190 26 6 2.7147 -0.1699 2.6886 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.5740 1.7564 0.0005 31 1 2.1208 2.2702 -0.8900 32 1 2.1207 2.2703 0.8900 33 1 2.1207 -1.9060 -1.5211 34 1 2.1207 -0.3645 -2.4111 35 1 3.5740 -0.8787 -1.5209 36 1 2.5363 -2.7986 0.5825 37 1 3.3556 -3.9595 2.5934 38 1 3.5432 -3.9224 5.0136 39 1 3.5426 -2.3810 5.9037 40 1 5.8574 -2.6707 4.2062 41 1 8.0376 -5.7110 5.0187 42 1 6.9821 -4.6417 3.1620 43 1 4.3068 -7.0461 8.8918 44 1 4.6961 -4.5534 8.6188 45 1 3.3449 -0.2679 4.7291 46 1 2.5342 0.8946 2.7155 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_9630768_14772022.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:59:06 Heat of formation + Delta-G solvation = -83.309696 kcal Electronic energy + Delta-G solvation = -29190.221991 eV Core-core repulsion = 25229.154138 eV Total energy + Delta-G solvation = -3961.067853 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 385.080 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.13590 -39.53140 -38.18391 -37.46563 -36.60810 -36.11031 -31.98150 -31.82380 -31.69826 -29.54886 -28.45062 -28.41682 -27.48771 -26.41494 -24.27276 -23.40683 -22.07370 -21.70619 -19.88134 -19.06567 -18.67163 -18.27073 -17.93574 -17.33227 -16.74301 -16.47123 -16.17824 -15.87142 -15.60029 -15.14390 -14.99467 -14.85208 -14.37788 -14.32788 -14.24522 -14.18525 -14.04743 -13.96133 -13.80417 -13.73669 -13.53842 -13.33586 -13.26751 -13.10908 -13.03136 -12.97092 -12.95948 -12.78305 -12.76166 -12.36548 -12.22793 -12.16652 -11.91087 -11.65501 -11.03421 -10.91131 -10.88568 -10.79614 -10.30576 -10.09510 -9.73758 -9.73330 -9.60602 -0.56872 -0.38324 0.22243 0.37009 0.58699 0.59228 0.85698 1.16563 1.24130 1.30090 1.68684 1.72144 1.84733 1.93394 2.29873 2.54674 2.82867 3.00152 3.08067 3.48506 3.59391 3.80960 3.96027 4.10472 4.18073 4.21854 4.35380 4.42019 4.48278 4.56333 4.68637 4.69307 4.71580 4.71886 4.74541 4.75399 4.76309 4.82076 4.90995 5.01160 5.07631 5.16124 5.22204 5.41884 5.50064 5.50820 5.53423 5.66547 5.72247 6.17156 6.21308 6.25318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.059 2.941 3 C -0.450 4.450 4 C -0.449 4.449 5 C -0.365 4.365 6 C -0.092 4.092 7 C -0.111 4.111 8 C -0.087 4.087 9 C 0.162 3.838 10 N -1.086 6.086 11 S 2.722 3.278 12 O -0.964 6.964 13 O -0.954 6.954 14 C -0.664 4.664 15 C -0.053 4.053 16 C -0.074 4.074 17 O -0.542 6.542 18 Si 0.908 3.092 19 H -0.233 1.233 20 H -0.226 1.226 21 H -0.231 1.231 22 S 0.140 5.860 23 C -0.210 4.210 24 C -0.076 4.076 25 C -0.113 4.113 26 C -0.091 4.091 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.422 0.578 41 H 0.112 0.888 42 H 0.394 0.606 43 H 0.176 0.824 44 H 0.160 0.840 45 H 0.122 0.878 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.749 -2.536 -4.266 5.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.250 2.750 3 C -0.558 4.558 4 C -0.557 4.557 5 C -0.407 4.407 6 C -0.110 4.110 7 C -0.130 4.130 8 C -0.088 4.088 9 C 0.036 3.964 10 N -0.848 5.848 11 S 2.808 3.192 12 O -0.954 6.954 13 O -0.944 6.944 14 C -0.762 4.762 15 C -0.174 4.174 16 C -0.186 4.186 17 O -0.350 6.350 18 Si 0.726 3.274 19 H -0.155 1.155 20 H -0.148 1.148 21 H -0.154 1.154 22 S 0.403 5.597 23 C -0.346 4.346 24 C -0.104 4.104 25 C -0.132 4.132 26 C -0.109 4.109 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.088 0.912 39 H 0.102 0.898 40 H 0.258 0.742 41 H 0.129 0.871 42 H 0.244 0.756 43 H 0.194 0.806 44 H 0.177 0.823 45 H 0.140 0.860 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.690 -4.377 -3.882 6.090 hybrid contribution 0.141 0.963 0.089 0.978 sum -1.548 -3.414 -3.793 5.333 Atomic orbital electron populations 1.26131 1.20559 1.04537 1.04472 0.78180 0.66825 0.66124 0.63825 1.26142 1.06461 1.18622 1.04546 1.26135 1.06429 1.08013 1.15111 1.27386 1.03636 0.99567 1.10138 1.21063 0.97574 0.94604 0.97763 1.21152 0.99307 0.99829 0.92709 1.19755 1.00163 0.94052 0.94863 1.20127 0.79342 1.00129 0.96822 1.55291 1.14298 1.85125 1.30048 1.01157 0.72946 0.72693 0.72423 1.93582 1.79992 1.65585 1.56216 1.93560 1.30726 1.86664 1.83447 1.29965 1.15621 1.25436 1.05227 1.23784 0.99119 0.96356 0.98107 1.24463 0.99575 1.01999 0.92591 1.86388 1.62300 1.49333 1.37000 0.86097 0.83828 0.75571 0.81896 1.15482 1.14801 1.15364 1.84452 1.48432 1.07862 1.18942 1.25827 1.07803 0.96964 1.03983 1.19795 0.97702 0.96531 0.96356 1.21225 0.99124 0.93965 0.98871 1.21082 0.97393 0.99685 0.92695 0.91162 0.91101 0.91208 0.91060 0.91018 0.91163 0.91222 0.91012 0.91075 0.86223 0.86063 0.91155 0.89845 0.74150 0.87073 0.75584 0.80643 0.82296 0.85994 0.86118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.72 8.65 101.05 0.87 1.60 16 2 Si 1.06 -2.93 12.32 -169.99 -2.09 -5.02 16 3 C -0.45 0.85 8.53 101.05 0.86 1.71 16 4 C -0.45 0.97 8.53 101.05 0.86 1.83 16 5 C -0.37 0.26 4.59 -39.58 -0.18 0.08 16 6 C -0.09 0.05 9.29 -39.59 -0.37 -0.32 16 7 C -0.11 0.03 9.70 -39.59 -0.38 -0.35 16 8 C -0.09 -0.02 5.27 -104.62 -0.55 -0.57 16 9 C 0.16 -0.03 6.32 -5.19 -0.03 -0.06 16 10 N -1.09 -0.06 4.15 -11.65 -0.05 -0.11 16 11 S 2.72 7.52 4.91 -107.50 -0.53 6.99 16 12 O -0.96 -5.34 16.88 -57.17 -0.97 -6.30 16 13 O -0.95 -4.55 16.57 -63.61 -1.05 -5.60 16 14 C -0.66 -1.27 5.74 -41.21 -0.24 -1.50 16 15 C -0.05 -0.05 5.77 -36.00 -0.21 -0.26 16 16 C -0.07 0.09 2.14 36.01 0.08 0.17 16 17 O -0.54 1.41 7.86 -48.95 -0.38 1.03 16 18 Si 0.91 -1.72 26.42 -169.99 -4.49 -6.21 16 19 H -0.23 0.19 7.11 56.52 0.40 0.59 16 20 H -0.23 0.53 7.11 56.52 0.40 0.93 16 21 H -0.23 0.29 7.11 56.52 0.40 0.69 16 22 S 0.14 0.03 20.80 -107.50 -2.24 -2.21 16 23 C -0.21 -0.01 11.23 29.04 0.33 0.31 16 24 C -0.08 -0.10 9.70 -41.21 -0.40 -0.50 16 25 C -0.11 -0.06 9.70 -39.58 -0.38 -0.45 16 26 C -0.09 0.00 9.29 -39.58 -0.37 -0.37 16 27 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 28 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 29 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 30 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 31 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 32 H 0.07 -0.14 7.69 -51.92 -0.40 -0.53 16 33 H 0.07 -0.16 7.69 -51.93 -0.40 -0.56 16 34 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 35 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 36 H 0.12 -0.27 7.43 -52.49 -0.39 -0.66 16 37 H 0.12 -0.19 8.06 -52.49 -0.42 -0.61 16 38 H 0.07 -0.07 8.09 -51.93 -0.42 -0.49 16 39 H 0.08 0.00 7.75 -51.93 -0.40 -0.40 16 40 H 0.42 -0.57 7.54 -34.47 -0.26 -0.83 16 41 H 0.11 -0.21 7.93 -51.93 -0.41 -0.63 16 42 H 0.39 -2.67 8.74 45.56 0.40 -2.27 16 43 H 0.18 -0.42 8.06 -52.49 -0.42 -0.84 16 44 H 0.16 0.08 7.74 -52.49 -0.41 -0.32 16 45 H 0.12 -0.02 8.06 -52.48 -0.42 -0.44 16 46 H 0.12 -0.19 7.43 -52.49 -0.39 -0.58 16 LS Contribution 403.63 15.07 6.08 6.08 Total: 0.00 -8.87 403.63 -11.87 -20.75 By element: Atomic # 1 Polarization: -4.68 SS G_CDS: -6.04 Total: -10.72 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -0.11 Total: 1.33 kcal Atomic # 7 Polarization: -0.06 SS G_CDS: -0.05 Total: -0.11 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: -2.40 Total: -10.88 kcal Atomic # 14 Polarization: -4.64 SS G_CDS: -6.59 Total: -11.23 kcal Atomic # 16 Polarization: 7.55 SS G_CDS: -2.76 Total: 4.78 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -8.87 -11.87 -20.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9630768_14772022.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.564 kcal (2) G-P(sol) polarization free energy of solvation -8.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds