Wall clock time and date at job start Mon Mar 8 2021 14:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86293 * 109.47357 * 2 1 4 4 C 1.86299 * 109.47005 * 239.99735 * 2 1 3 5 5 C 1.86801 * 109.46816 * 120.00042 * 2 1 3 6 6 C 1.38231 * 120.00380 * 89.99656 * 5 2 1 7 7 C 1.38234 * 120.00235 * 180.02562 * 6 5 2 8 8 C 1.38228 * 119.99982 * 0.02562 * 7 6 5 9 9 C 1.50706 * 120.00101 * 179.97438 * 8 7 6 10 10 N 1.46499 * 109.46932 * 89.99552 * 9 8 7 11 11 S 1.65598 * 119.99897 * 165.48334 * 10 9 8 12 12 O 1.42101 * 106.40495 * 309.62873 * 11 10 9 13 13 O 1.42094 * 106.40394 * 176.70780 * 11 10 9 14 14 C 1.76201 * 107.21910 * 63.16699 * 11 10 9 15 15 C 1.33391 * 122.53879 * 67.29952 * 14 11 10 16 16 C 1.50700 * 125.20137 * 359.97438 * 15 14 11 17 17 O 1.42901 * 109.47596 * 318.23662 * 16 15 14 18 18 Si 1.86303 * 109.47124 * 198.23484 * 16 15 14 19 19 H 1.48493 * 109.46859 * 60.00498 * 18 16 15 20 20 H 1.48503 * 109.46843 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47024 * 300.00237 * 18 16 15 22 22 S 1.75879 * 109.59563 * 179.97438 * 15 14 11 23 23 C 1.75885 * 90.97173 * 359.97438 * 22 15 14 24 24 C 1.33393 * 109.59297 * 0.02562 * 23 22 15 25 25 C 1.38237 * 120.00070 * 0.24410 * 8 7 6 26 26 C 1.38231 * 119.99685 * 359.50217 * 25 8 7 27 27 H 1.08998 * 109.47154 * 300.00744 * 1 2 3 28 28 H 1.09000 * 109.46725 * 60.00107 * 1 2 3 29 29 H 1.08998 * 109.47652 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47489 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47116 * 299.99653 * 3 2 1 32 32 H 1.09011 * 109.47247 * 59.99571 * 3 2 1 33 33 H 1.09000 * 109.47442 * 299.99775 * 4 2 1 34 34 H 1.09000 * 109.47251 * 60.00479 * 4 2 1 35 35 H 1.09006 * 109.47008 * 180.02562 * 4 2 1 36 36 H 1.08000 * 120.00095 * 0.02562 * 6 5 2 37 37 H 1.07998 * 120.00011 * 179.97438 * 7 6 5 38 38 H 1.09003 * 109.47031 * 329.99707 * 9 8 7 39 39 H 1.08995 * 109.47009 * 209.99917 * 9 8 7 40 40 H 0.97003 * 120.00419 * 345.48551 * 10 9 8 41 41 H 1.09004 * 109.47034 * 78.23765 * 16 15 14 42 42 H 0.96693 * 114.00357 * 179.97438 * 17 16 15 43 43 H 1.07993 * 125.20255 * 179.97438 * 23 22 15 44 44 H 1.07994 * 122.54148 * 179.97438 * 24 23 22 45 45 H 1.08005 * 119.99967 * 179.72686 * 25 8 7 46 46 H 1.08000 * 119.99839 * 180.23369 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4856 -0.8806 1.5252 6 6 2.7159 -2.2432 1.4911 7 6 3.1761 -2.8949 2.6200 8 6 3.4055 -2.1841 3.7831 9 6 3.9067 -2.8947 5.0140 10 7 5.3717 -2.8949 5.0153 11 16 6.1984 -3.2780 6.3980 12 8 5.6453 -2.4750 7.4318 13 8 7.5779 -3.2647 6.0575 14 6 5.8007 -4.9473 6.7980 15 6 6.1837 -5.9771 6.0417 16 6 6.9880 -5.8705 4.7717 17 8 6.5089 -4.7706 3.9953 18 14 6.8129 -7.4452 3.7917 19 1 5.3830 -7.6624 3.4552 20 1 7.6060 -7.3403 2.5406 21 1 7.3108 -8.5882 4.5985 22 16 5.6066 -7.4784 6.7533 23 6 4.8560 -6.5972 8.0775 24 6 5.0680 -5.2894 7.9215 25 6 3.1699 -0.8225 3.8190 26 6 2.7147 -0.1699 2.6886 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.5740 1.7564 0.0005 31 1 2.1208 2.2702 -0.8900 32 1 2.1207 2.2703 0.8900 33 1 2.1207 -1.9060 -1.5211 34 1 2.1207 -0.3645 -2.4111 35 1 3.5740 -0.8787 -1.5209 36 1 2.5363 -2.7986 0.5825 37 1 3.3556 -3.9595 2.5934 38 1 3.5432 -3.9224 5.0136 39 1 3.5426 -2.3810 5.9037 40 1 5.8574 -2.6707 4.2062 41 1 8.0376 -5.7110 5.0187 42 1 6.9821 -4.6417 3.1620 43 1 4.3068 -7.0461 8.8918 44 1 4.6961 -4.5534 8.6188 45 1 3.3449 -0.2679 4.7291 46 1 2.5342 0.8946 2.7155 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_9630768_14772022.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:59:05 Heat of formation + Delta-G solvation = -79.066899 kcal Electronic energy + Delta-G solvation = -29190.038010 eV Core-core repulsion = 25229.154138 eV Total energy + Delta-G solvation = -3960.883871 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 385.080 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.08466 -39.50767 -38.39314 -37.42535 -36.91652 -36.12889 -31.94894 -31.76207 -31.67708 -29.37980 -28.26595 -28.24955 -27.47484 -26.41047 -24.25946 -23.35081 -22.03945 -21.77731 -20.01553 -19.01078 -18.70811 -18.28274 -17.94673 -17.37446 -16.79127 -16.37041 -16.14268 -15.93601 -15.59931 -15.13820 -14.96570 -14.80813 -14.32804 -14.29025 -14.19496 -14.03509 -13.94048 -13.86853 -13.75411 -13.66345 -13.49597 -13.25898 -13.24418 -13.12712 -13.08927 -12.99632 -12.94305 -12.85024 -12.79351 -12.38183 -12.17630 -12.09100 -11.83510 -11.69403 -10.88170 -10.77483 -10.72933 -10.69572 -10.32424 -10.10784 -9.73393 -9.69602 -9.55608 -0.67237 -0.47405 0.23507 0.39820 0.59962 0.62964 0.96646 1.11816 1.39806 1.44713 1.83238 1.89957 2.05905 2.07211 2.24197 2.70594 2.73173 3.05170 3.14254 3.45626 3.61806 3.81529 4.01583 4.11920 4.25566 4.28619 4.41669 4.43480 4.51110 4.64550 4.69229 4.82914 4.86161 4.87453 4.89025 4.90450 4.91624 4.93058 4.93840 4.97364 5.12540 5.13185 5.28407 5.52934 5.61680 5.65951 5.69574 5.74377 5.76899 6.23605 6.27896 6.66068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.464 4.464 2 Si 1.125 2.875 3 C -0.464 4.464 4 C -0.459 4.459 5 C -0.376 4.376 6 C -0.101 4.101 7 C -0.116 4.116 8 C -0.093 4.093 9 C 0.162 3.838 10 N -1.074 6.074 11 S 2.733 3.267 12 O -0.998 6.998 13 O -0.978 6.978 14 C -0.676 4.676 15 C -0.060 4.060 16 C -0.080 4.080 17 O -0.549 6.549 18 Si 0.937 3.063 19 H -0.248 1.248 20 H -0.214 1.214 21 H -0.241 1.241 22 S 0.150 5.850 23 C -0.207 4.207 24 C -0.096 4.096 25 C -0.131 4.131 26 C -0.104 4.104 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.138 0.862 37 H 0.133 0.867 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.428 0.572 41 H 0.117 0.883 42 H 0.412 0.588 43 H 0.199 0.801 44 H 0.160 0.840 45 H 0.120 0.880 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.952 -3.369 -5.518 6.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.312 2.688 3 C -0.571 4.571 4 C -0.567 4.567 5 C -0.417 4.417 6 C -0.119 4.119 7 C -0.135 4.135 8 C -0.095 4.095 9 C 0.036 3.964 10 N -0.838 5.838 11 S 2.821 3.179 12 O -0.988 6.988 13 O -0.968 6.968 14 C -0.777 4.777 15 C -0.181 4.181 16 C -0.191 4.191 17 O -0.361 6.361 18 Si 0.755 3.245 19 H -0.171 1.171 20 H -0.136 1.136 21 H -0.164 1.164 22 S 0.414 5.586 23 C -0.342 4.342 24 C -0.124 4.124 25 C -0.150 4.150 26 C -0.121 4.121 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.156 0.844 37 H 0.151 0.849 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.267 0.733 41 H 0.135 0.865 42 H 0.265 0.735 43 H 0.216 0.784 44 H 0.177 0.823 45 H 0.138 0.862 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.870 -5.174 -5.144 7.532 hybrid contribution 0.168 1.198 0.458 1.293 sum -1.703 -3.976 -4.686 6.377 Atomic orbital electron populations 1.26312 1.21924 1.04419 1.04388 0.77171 0.65007 0.64516 0.62094 1.26314 1.06416 1.19744 1.04647 1.26245 1.06475 1.08465 1.15489 1.27884 1.03103 0.99874 1.10805 1.21374 0.97233 0.94893 0.98388 1.21348 0.99089 1.00495 0.92582 1.19788 1.00585 0.94004 0.95142 1.20171 0.78899 1.00657 0.96672 1.55022 1.14396 1.84938 1.29478 1.00478 0.72341 0.72778 0.72274 1.93535 1.80405 1.67075 1.57808 1.93517 1.32285 1.87217 1.83807 1.29784 1.16934 1.24835 1.06106 1.24151 0.98758 0.96405 0.98757 1.24599 0.99433 1.02969 0.92148 1.86341 1.62760 1.48910 1.38049 0.85709 0.82751 0.74315 0.81770 1.17099 1.13609 1.16442 1.84409 1.48062 1.07384 1.18781 1.26132 1.07216 0.96534 1.04350 1.19919 0.98532 0.97268 0.96640 1.21387 0.99888 0.94429 0.99284 1.21323 0.97525 1.00467 0.92833 0.91601 0.90859 0.91346 0.91306 0.90845 0.91184 0.90788 0.90864 0.91144 0.84445 0.84876 0.90168 0.90449 0.73288 0.86545 0.73476 0.78399 0.82252 0.86155 0.85049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.67 8.65 113.37 0.98 2.65 16 2 Si 1.12 -6.89 12.32 68.60 0.85 -6.05 16 3 C -0.46 1.88 8.53 113.37 0.97 2.84 16 4 C -0.46 2.44 8.53 113.37 0.97 3.40 16 5 C -0.38 0.65 4.59 22.27 0.10 0.75 16 6 C -0.10 0.18 9.29 22.27 0.21 0.38 16 7 C -0.12 0.10 9.70 22.27 0.22 0.32 16 8 C -0.09 -0.09 5.27 -19.86 -0.10 -0.19 16 9 C 0.16 0.08 6.32 85.64 0.54 0.62 16 10 N -1.07 -1.05 4.15 -190.79 -0.79 -1.84 16 11 S 2.73 18.84 4.91 -56.49 -0.28 18.56 16 12 O -1.00 -13.06 16.88 -128.00 -2.16 -15.22 16 13 O -0.98 -10.52 16.57 -121.84 -2.02 -12.54 16 14 C -0.68 -3.16 5.74 21.22 0.12 -3.04 16 15 C -0.06 -0.12 5.77 24.59 0.14 0.02 16 16 C -0.08 0.21 2.14 71.24 0.15 0.36 16 17 O -0.55 2.98 7.86 -135.87 -1.07 1.91 16 18 Si 0.94 -4.11 26.42 68.60 1.81 -2.30 16 19 H -0.25 0.48 7.11 99.48 0.71 1.19 16 20 H -0.21 1.33 7.11 99.48 0.71 2.04 16 21 H -0.24 0.68 7.11 99.48 0.71 1.39 16 22 S 0.15 0.03 20.80 -56.49 -1.18 -1.15 16 23 C -0.21 -0.01 11.23 66.72 0.75 0.74 16 24 C -0.10 -0.33 9.70 21.22 0.21 -0.13 16 25 C -0.13 -0.27 9.70 22.27 0.22 -0.05 16 26 C -0.10 -0.03 9.29 22.27 0.21 0.17 16 27 H 0.06 -0.17 7.96 -2.39 -0.02 -0.19 16 28 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 29 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 30 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 31 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 32 H 0.07 -0.28 7.69 -2.38 -0.02 -0.29 16 33 H 0.07 -0.44 7.69 -2.39 -0.02 -0.46 16 34 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 35 H 0.07 -0.34 7.96 -2.38 -0.02 -0.36 16 36 H 0.14 -0.81 7.43 -2.91 -0.02 -0.83 16 37 H 0.13 -0.51 8.06 -2.91 -0.02 -0.53 16 38 H 0.08 -0.13 8.09 -2.39 -0.02 -0.15 16 39 H 0.08 0.12 7.75 -2.39 -0.02 0.11 16 40 H 0.43 -0.91 7.54 -96.74 -0.73 -1.64 16 41 H 0.12 -0.45 7.93 -2.38 -0.02 -0.47 16 42 H 0.41 -5.87 8.74 -74.06 -0.65 -6.51 16 43 H 0.20 -1.10 8.06 -2.91 -0.02 -1.12 16 44 H 0.16 0.41 7.74 -2.91 -0.02 0.39 16 45 H 0.12 0.17 8.06 -2.91 -0.02 0.14 16 46 H 0.13 -0.37 7.43 -2.91 -0.02 -0.39 16 Total: 0.00 -20.21 403.63 1.22 -18.99 By element: Atomic # 1 Polarization: -9.60 SS G_CDS: 0.38 Total: -9.22 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: 5.67 Total: 8.85 kcal Atomic # 7 Polarization: -1.05 SS G_CDS: -0.79 Total: -1.84 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -5.25 Total: -25.85 kcal Atomic # 14 Polarization: -11.00 SS G_CDS: 2.66 Total: -8.34 kcal Atomic # 16 Polarization: 18.87 SS G_CDS: -1.45 Total: 17.42 kcal Total: -20.21 1.22 -18.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9630768_14772022.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.075 kcal (2) G-P(sol) polarization free energy of solvation -20.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds