Wall clock time and date at job start Mon Mar 8 2021 14:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86300 * 109.47178 * 2 1 4 4 C 1.86298 * 109.46970 * 239.99606 * 2 1 3 5 5 C 1.86799 * 109.46962 * 119.99548 * 2 1 3 6 6 C 1.38238 * 119.99768 * 90.00159 * 5 2 1 7 7 C 1.38235 * 120.00108 * 180.02562 * 6 5 2 8 8 C 1.38243 * 119.99617 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99586 * 179.97438 * 8 7 6 10 10 N 1.46505 * 109.47014 * 89.99954 * 9 8 7 11 11 S 1.65596 * 120.00034 * 164.99846 * 10 9 8 12 12 O 1.42091 * 106.40362 * 178.53876 * 11 10 9 13 13 O 1.42110 * 106.40214 * 311.46016 * 11 10 9 14 14 C 1.76197 * 107.21829 * 64.99826 * 11 10 9 15 15 C 1.33399 * 122.53749 * 269.70791 * 14 11 10 16 16 S 1.75882 * 109.58926 * 179.90396 * 15 14 11 17 17 C 1.75882 * 90.97327 * 0.30653 * 16 15 14 18 18 C 1.50700 * 125.20349 * 179.79568 * 17 16 15 19 19 O 1.42903 * 109.47349 * 120.04086 * 18 17 16 20 20 Si 1.86296 * 109.47084 * 0.03691 * 18 17 16 21 21 H 1.48502 * 109.46671 * 180.02562 * 20 18 17 22 22 H 1.48495 * 109.47367 * 299.99878 * 20 18 17 23 23 H 1.48493 * 109.47267 * 60.00520 * 20 18 17 24 24 C 1.33389 * 109.59251 * 359.82341 * 17 16 15 25 25 C 1.38233 * 120.00248 * 0.25361 * 8 7 6 26 26 C 1.38234 * 120.00169 * 270.02385 * 5 2 1 27 27 H 1.09006 * 109.47606 * 300.00755 * 1 2 3 28 28 H 1.09001 * 109.47017 * 60.00247 * 1 2 3 29 29 H 1.09004 * 109.47654 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47074 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46492 * 299.99514 * 3 2 1 32 32 H 1.08993 * 109.47520 * 59.99489 * 3 2 1 33 33 H 1.09003 * 109.47232 * 299.99789 * 4 2 1 34 34 H 1.08991 * 109.47125 * 60.00223 * 4 2 1 35 35 H 1.09007 * 109.46666 * 180.02562 * 4 2 1 36 36 H 1.08000 * 120.00578 * 359.97438 * 6 5 2 37 37 H 1.07999 * 120.00165 * 179.97438 * 7 6 5 38 38 H 1.09000 * 109.46646 * 209.99280 * 9 8 7 39 39 H 1.09000 * 109.47248 * 329.99998 * 9 8 7 40 40 H 0.96999 * 119.99608 * 345.00138 * 10 9 8 41 41 H 1.07996 * 125.20414 * 0.02805 * 15 14 11 42 42 H 1.09004 * 109.46649 * 240.03938 * 18 17 16 43 43 H 0.96698 * 114.00182 * 179.97438 * 19 18 17 44 44 H 1.07997 * 122.54051 * 179.97438 * 24 17 16 45 45 H 1.08004 * 119.99934 * 179.72684 * 25 8 7 46 46 H 1.07999 * 120.00005 * 359.97438 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8783 -1.5211 5 6 2.4856 -0.8805 1.5253 6 6 2.7160 -2.2431 1.4911 7 6 3.1762 -2.8948 2.6200 8 6 3.4055 -2.1839 3.7832 9 6 3.9068 -2.8945 5.0141 10 7 5.3718 -2.8946 5.0154 11 16 6.1986 -3.2659 6.4013 12 8 7.5796 -3.2131 6.0711 13 8 5.6166 -2.4859 7.4369 14 6 5.8429 -4.9483 6.7859 15 6 4.8183 -5.3058 7.5616 16 16 4.7790 -7.0573 7.7165 17 6 6.2037 -7.2095 6.6964 18 6 6.8655 -8.5090 6.3166 19 8 6.8515 -8.6532 4.8950 20 14 5.9406 -9.9272 7.0938 21 1 6.5932 -11.2078 6.7200 22 1 5.9552 -9.7776 8.5711 23 1 4.5367 -9.9270 6.6100 24 6 6.6090 -5.9986 6.3107 25 6 3.1697 -0.8223 3.8191 26 6 2.7155 -0.1696 2.6883 27 1 -0.3634 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.5740 1.7564 -0.0005 31 1 2.1207 2.2702 -0.8901 32 1 2.1206 2.2703 0.8899 33 1 2.1206 -1.9060 -1.5210 34 1 2.1206 -0.3646 -2.4110 35 1 3.5740 -0.8787 -1.5208 36 1 2.5356 -2.7987 0.5827 37 1 3.3558 -3.9594 2.5934 38 1 3.5427 -2.3807 5.9038 39 1 3.5434 -3.9222 5.0136 40 1 5.8575 -2.6770 4.2044 41 1 4.1186 -4.6242 8.0223 42 1 7.8960 -8.5092 6.6718 43 1 7.2626 -9.4691 4.5783 44 1 7.4701 -5.8490 5.6763 45 1 3.3447 -0.2677 4.7292 46 1 2.5355 0.8950 2.7150 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_9630768_15065232.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:59:17 Heat of formation + Delta-G solvation = -91.327487 kcal Electronic energy + Delta-G solvation = -27900.626699 eV Core-core repulsion = 23939.211169 eV Total energy + Delta-G solvation = -3961.415530 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 385.080 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.22057 -39.41295 -38.20436 -37.62242 -36.82102 -36.38407 -31.99792 -31.88832 -31.85302 -29.56499 -28.46105 -28.42994 -27.25750 -26.56949 -24.86194 -23.48182 -22.18060 -21.22236 -20.19996 -19.06851 -18.68791 -18.54197 -17.79242 -17.70806 -16.84119 -16.51425 -16.28657 -15.92205 -15.68714 -15.52819 -14.96561 -14.51118 -14.44757 -14.35020 -14.24184 -14.18974 -14.12670 -14.06725 -14.01307 -13.82369 -13.62332 -13.38873 -13.27789 -13.12092 -13.11957 -13.09369 -12.98965 -12.88096 -12.65146 -12.52022 -12.50147 -12.21568 -11.98869 -11.64014 -11.05742 -10.92350 -10.85820 -10.66902 -10.63534 -10.14696 -9.83547 -9.79882 -9.68207 -0.76103 -0.47409 0.18419 0.29713 0.52756 0.53647 0.92947 1.05396 1.28552 1.32403 1.69068 1.73446 1.83093 1.89639 2.12909 2.52626 2.74588 2.93391 3.15026 3.38096 3.59940 3.68418 3.83034 3.86309 4.09407 4.16431 4.26508 4.29078 4.31477 4.49590 4.62792 4.66572 4.68439 4.70077 4.73670 4.73904 4.74484 4.75582 4.76738 4.91741 4.99856 5.08567 5.15082 5.39116 5.44916 5.48789 5.52054 5.61434 5.62256 5.87302 6.10562 6.38632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.060 2.940 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.363 4.363 6 C -0.090 4.090 7 C -0.113 4.113 8 C -0.094 4.094 9 C 0.156 3.844 10 N -1.110 6.110 11 S 2.711 3.289 12 O -0.950 6.950 13 O -0.952 6.952 14 C -0.685 4.685 15 C -0.085 4.085 16 S 0.148 5.852 17 C -0.184 4.184 18 C -0.041 4.041 19 O -0.541 6.541 20 Si 0.889 3.111 21 H -0.227 1.227 22 H -0.232 1.232 23 H -0.231 1.231 24 C -0.040 4.040 25 C -0.111 4.111 26 C -0.090 4.090 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.422 0.578 41 H 0.187 0.813 42 H 0.089 0.911 43 H 0.385 0.615 44 H 0.159 0.841 45 H 0.123 0.877 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.650 -2.855 -2.488 4.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.252 2.748 3 C -0.558 4.558 4 C -0.558 4.558 5 C -0.405 4.405 6 C -0.108 4.108 7 C -0.132 4.132 8 C -0.095 4.095 9 C 0.031 3.969 10 N -0.871 5.871 11 S 2.797 3.203 12 O -0.940 6.940 13 O -0.942 6.942 14 C -0.785 4.785 15 C -0.224 4.224 16 S 0.412 5.588 17 C -0.302 4.302 18 C -0.154 4.154 19 O -0.348 6.348 20 Si 0.708 3.292 21 H -0.149 1.149 22 H -0.155 1.155 23 H -0.153 1.153 24 C -0.068 4.068 25 C -0.130 4.130 26 C -0.108 4.108 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.108 0.892 39 H 0.092 0.908 40 H 0.258 0.742 41 H 0.205 0.795 42 H 0.107 0.893 43 H 0.233 0.767 44 H 0.176 0.824 45 H 0.141 0.859 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.895 -3.589 -0.577 5.328 hybrid contribution 1.310 0.063 -1.209 1.784 sum -2.585 -3.526 -1.786 4.723 Atomic orbital electron populations 1.26130 1.20490 1.04563 1.04504 0.78172 0.66831 0.66109 0.63727 1.26142 1.06483 1.18590 1.04575 1.26140 1.06474 1.08036 1.15108 1.27446 1.03301 0.99545 1.10226 1.21086 0.97347 0.94639 0.97770 1.21178 0.99384 0.99850 0.92793 1.19717 1.00846 0.94217 0.94734 1.20248 0.78666 1.00524 0.97509 1.55590 1.15190 1.85963 1.30358 1.01563 0.72908 0.73002 0.72798 1.93614 1.30332 1.86524 1.83531 1.93608 1.78830 1.66372 1.55387 1.30052 1.07464 1.26407 1.14585 1.25848 0.99171 0.99454 0.97928 1.84442 1.25338 1.01990 1.46986 1.23804 1.01190 0.98166 1.07000 1.23981 1.03967 1.00138 0.87328 1.86502 1.83637 1.46238 1.18412 0.86358 0.82208 0.78976 0.81648 1.14891 1.15466 1.15320 1.19568 0.99676 0.89084 0.98491 1.21220 0.99002 0.93831 0.98953 1.21104 0.97286 0.99770 0.92646 0.91163 0.91043 0.91186 0.91045 0.90967 0.91158 0.91193 0.90960 0.91050 0.86015 0.86055 0.89189 0.90757 0.74232 0.79541 0.89282 0.76729 0.82399 0.85882 0.85956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.78 8.65 101.05 0.87 1.65 16 2 Si 1.06 -2.97 12.32 -169.99 -2.09 -5.07 16 3 C -0.45 0.87 8.53 101.05 0.86 1.73 16 4 C -0.45 0.91 8.53 101.05 0.86 1.77 16 5 C -0.36 0.27 4.59 -39.58 -0.18 0.09 16 6 C -0.09 0.04 9.29 -39.58 -0.37 -0.33 16 7 C -0.11 0.03 9.70 -39.58 -0.38 -0.36 16 8 C -0.09 0.01 5.28 -104.62 -0.55 -0.54 16 9 C 0.16 -0.17 6.35 -5.19 -0.03 -0.20 16 10 N -1.11 0.58 5.99 -11.65 -0.07 0.51 16 11 S 2.71 4.74 5.80 -107.50 -0.62 4.11 16 12 O -0.95 -4.52 17.63 -57.17 -1.01 -5.53 16 13 O -0.95 -3.84 17.11 -57.17 -0.98 -4.82 16 14 C -0.69 -0.79 5.86 -41.21 -0.24 -1.03 16 15 C -0.08 0.00 10.70 29.04 0.31 0.31 16 16 S 0.15 0.04 20.58 -107.50 -2.21 -2.17 16 17 C -0.18 -0.21 5.76 -36.00 -0.21 -0.42 16 18 C -0.04 0.03 2.95 36.01 0.11 0.14 16 19 O -0.54 0.33 12.83 -35.23 -0.45 -0.13 16 20 Si 0.89 -0.96 26.25 -169.99 -4.46 -5.42 16 21 H -0.23 0.35 7.11 56.52 0.40 0.75 16 22 H -0.23 0.11 7.11 56.52 0.40 0.52 16 23 H -0.23 -0.04 7.11 56.52 0.40 0.36 16 24 C -0.04 -0.07 9.56 -41.21 -0.39 -0.46 16 25 C -0.11 -0.03 9.70 -39.58 -0.38 -0.41 16 26 C -0.09 0.02 9.29 -39.58 -0.37 -0.35 16 27 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 28 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 29 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 30 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 31 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 32 H 0.07 -0.14 7.69 -51.93 -0.40 -0.54 16 33 H 0.07 -0.15 7.69 -51.93 -0.40 -0.55 16 34 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 35 H 0.07 -0.12 7.96 -51.92 -0.41 -0.53 16 36 H 0.12 -0.26 7.43 -52.49 -0.39 -0.65 16 37 H 0.12 -0.18 8.06 -52.49 -0.42 -0.60 16 38 H 0.09 -0.14 7.69 -51.93 -0.40 -0.54 16 39 H 0.07 -0.19 8.09 -51.93 -0.42 -0.61 16 40 H 0.42 -0.61 8.64 -34.47 -0.30 -0.90 16 41 H 0.19 -0.44 8.00 -52.49 -0.42 -0.86 16 42 H 0.09 -0.23 7.96 -51.93 -0.41 -0.64 16 43 H 0.38 -1.97 8.74 45.56 0.40 -1.57 16 44 H 0.16 0.19 7.96 -52.49 -0.42 -0.23 16 45 H 0.12 -0.09 8.06 -52.48 -0.42 -0.51 16 46 H 0.12 -0.23 7.43 -52.49 -0.39 -0.62 16 LS Contribution 413.76 15.07 6.24 6.24 Total: 0.00 -9.79 413.76 -11.85 -21.64 By element: Atomic # 1 Polarization: -4.87 SS G_CDS: -6.08 Total: -10.96 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -0.10 Total: 1.59 kcal Atomic # 7 Polarization: 0.58 SS G_CDS: -0.07 Total: 0.51 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: -2.44 Total: -10.48 kcal Atomic # 14 Polarization: -3.93 SS G_CDS: -6.56 Total: -10.49 kcal Atomic # 16 Polarization: 4.78 SS G_CDS: -2.84 Total: 1.94 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -9.79 -11.85 -21.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9630768_15065232.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.686 kcal (2) G-P(sol) polarization free energy of solvation -9.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds