Wall clock time and date at job start Mon Mar 8 2021 14:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86300 * 109.47178 * 2 1 4 4 C 1.86298 * 109.46970 * 239.99606 * 2 1 3 5 5 C 1.86799 * 109.46962 * 119.99548 * 2 1 3 6 6 C 1.38238 * 119.99768 * 90.00159 * 5 2 1 7 7 C 1.38235 * 120.00108 * 180.02562 * 6 5 2 8 8 C 1.38243 * 119.99617 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99586 * 179.97438 * 8 7 6 10 10 N 1.46505 * 109.47014 * 89.99954 * 9 8 7 11 11 S 1.65596 * 120.00034 * 164.99846 * 10 9 8 12 12 O 1.42091 * 106.40362 * 178.53876 * 11 10 9 13 13 O 1.42110 * 106.40214 * 311.46016 * 11 10 9 14 14 C 1.76197 * 107.21829 * 64.99826 * 11 10 9 15 15 C 1.33399 * 122.53749 * 269.70791 * 14 11 10 16 16 S 1.75882 * 109.58926 * 179.90396 * 15 14 11 17 17 C 1.75882 * 90.97327 * 0.30653 * 16 15 14 18 18 C 1.50700 * 125.20349 * 179.79568 * 17 16 15 19 19 O 1.42903 * 109.47349 * 120.04086 * 18 17 16 20 20 Si 1.86296 * 109.47084 * 0.03691 * 18 17 16 21 21 H 1.48502 * 109.46671 * 180.02562 * 20 18 17 22 22 H 1.48495 * 109.47367 * 299.99878 * 20 18 17 23 23 H 1.48493 * 109.47267 * 60.00520 * 20 18 17 24 24 C 1.33389 * 109.59251 * 359.82341 * 17 16 15 25 25 C 1.38233 * 120.00248 * 0.25361 * 8 7 6 26 26 C 1.38234 * 120.00169 * 270.02385 * 5 2 1 27 27 H 1.09006 * 109.47606 * 300.00755 * 1 2 3 28 28 H 1.09001 * 109.47017 * 60.00247 * 1 2 3 29 29 H 1.09004 * 109.47654 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47074 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46492 * 299.99514 * 3 2 1 32 32 H 1.08993 * 109.47520 * 59.99489 * 3 2 1 33 33 H 1.09003 * 109.47232 * 299.99789 * 4 2 1 34 34 H 1.08991 * 109.47125 * 60.00223 * 4 2 1 35 35 H 1.09007 * 109.46666 * 180.02562 * 4 2 1 36 36 H 1.08000 * 120.00578 * 359.97438 * 6 5 2 37 37 H 1.07999 * 120.00165 * 179.97438 * 7 6 5 38 38 H 1.09000 * 109.46646 * 209.99280 * 9 8 7 39 39 H 1.09000 * 109.47248 * 329.99998 * 9 8 7 40 40 H 0.96999 * 119.99608 * 345.00138 * 10 9 8 41 41 H 1.07996 * 125.20414 * 0.02805 * 15 14 11 42 42 H 1.09004 * 109.46649 * 240.03938 * 18 17 16 43 43 H 0.96698 * 114.00182 * 179.97438 * 19 18 17 44 44 H 1.07997 * 122.54051 * 179.97438 * 24 17 16 45 45 H 1.08004 * 119.99934 * 179.72684 * 25 8 7 46 46 H 1.07999 * 120.00005 * 359.97438 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8783 -1.5211 5 6 2.4856 -0.8805 1.5253 6 6 2.7160 -2.2431 1.4911 7 6 3.1762 -2.8948 2.6200 8 6 3.4055 -2.1839 3.7832 9 6 3.9068 -2.8945 5.0141 10 7 5.3718 -2.8946 5.0154 11 16 6.1986 -3.2659 6.4013 12 8 7.5796 -3.2131 6.0711 13 8 5.6166 -2.4859 7.4369 14 6 5.8429 -4.9483 6.7859 15 6 4.8183 -5.3058 7.5616 16 16 4.7790 -7.0573 7.7165 17 6 6.2037 -7.2095 6.6964 18 6 6.8655 -8.5090 6.3166 19 8 6.8515 -8.6532 4.8950 20 14 5.9406 -9.9272 7.0938 21 1 6.5932 -11.2078 6.7200 22 1 5.9552 -9.7776 8.5711 23 1 4.5367 -9.9270 6.6100 24 6 6.6090 -5.9986 6.3107 25 6 3.1697 -0.8223 3.8191 26 6 2.7155 -0.1696 2.6883 27 1 -0.3634 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.5740 1.7564 -0.0005 31 1 2.1207 2.2702 -0.8901 32 1 2.1206 2.2703 0.8899 33 1 2.1206 -1.9060 -1.5210 34 1 2.1206 -0.3646 -2.4110 35 1 3.5740 -0.8787 -1.5208 36 1 2.5356 -2.7987 0.5827 37 1 3.3558 -3.9594 2.5934 38 1 3.5427 -2.3807 5.9038 39 1 3.5434 -3.9222 5.0136 40 1 5.8575 -2.6770 4.2044 41 1 4.1186 -4.6242 8.0223 42 1 7.8960 -8.5092 6.6718 43 1 7.2626 -9.4691 4.5783 44 1 7.4701 -5.8490 5.6763 45 1 3.3447 -0.2677 4.7292 46 1 2.5355 0.8950 2.7150 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_9630768_15065232.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:59:16 Heat of formation + Delta-G solvation = -89.511644 kcal Electronic energy + Delta-G solvation = -27900.547959 eV Core-core repulsion = 23939.211169 eV Total energy + Delta-G solvation = -3961.336789 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 385.080 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.14241 -39.42032 -38.44876 -37.55178 -37.07419 -36.35469 -31.99234 -31.80986 -31.80167 -29.39727 -28.28292 -28.26103 -27.24120 -26.50731 -24.89305 -23.40934 -22.11191 -21.26971 -20.26477 -19.07076 -18.78522 -18.45970 -17.85439 -17.72564 -16.84203 -16.45283 -16.21856 -15.92551 -15.67908 -15.55999 -14.89906 -14.46909 -14.40960 -14.26941 -14.20577 -14.10912 -14.05488 -14.01880 -13.89588 -13.69241 -13.57912 -13.36804 -13.31974 -13.25258 -13.10631 -13.04654 -12.95787 -12.88344 -12.68647 -12.47594 -12.45198 -12.16606 -11.89873 -11.67146 -10.90194 -10.75464 -10.74630 -10.61941 -10.57284 -10.14049 -9.86337 -9.74736 -9.61169 -0.86645 -0.51678 0.20837 0.32920 0.53012 0.57897 0.94222 1.05393 1.37515 1.40016 1.81521 1.87410 1.98674 2.04036 2.17150 2.62370 2.68642 2.99184 3.17237 3.39414 3.67470 3.74109 3.89712 3.96142 4.15144 4.20896 4.35406 4.40483 4.41337 4.59441 4.60987 4.78431 4.79724 4.85335 4.85864 4.87891 4.89328 4.90439 4.90947 4.91564 5.02916 5.07936 5.23212 5.47530 5.60223 5.62489 5.67904 5.68542 5.73101 5.92196 6.18964 6.72755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.463 4.463 2 Si 1.126 2.874 3 C -0.464 4.464 4 C -0.462 4.462 5 C -0.376 4.376 6 C -0.103 4.103 7 C -0.123 4.123 8 C -0.100 4.100 9 C 0.151 3.849 10 N -1.102 6.102 11 S 2.730 3.270 12 O -0.984 6.984 13 O -0.977 6.977 14 C -0.691 4.691 15 C -0.082 4.082 16 S 0.155 5.845 17 C -0.196 4.196 18 C -0.044 4.044 19 O -0.558 6.558 20 Si 0.912 3.088 21 H -0.216 1.216 22 H -0.241 1.241 23 H -0.251 1.251 24 C -0.055 4.055 25 C -0.128 4.128 26 C -0.104 4.104 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.137 0.863 37 H 0.132 0.868 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.427 0.573 41 H 0.209 0.791 42 H 0.107 0.893 43 H 0.403 0.597 44 H 0.156 0.844 45 H 0.126 0.874 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.081 -3.461 -2.895 5.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.314 2.686 3 C -0.571 4.571 4 C -0.569 4.569 5 C -0.416 4.416 6 C -0.121 4.121 7 C -0.142 4.142 8 C -0.102 4.102 9 C 0.027 3.973 10 N -0.865 5.865 11 S 2.819 3.181 12 O -0.974 6.974 13 O -0.967 6.967 14 C -0.792 4.792 15 C -0.221 4.221 16 S 0.419 5.581 17 C -0.314 4.314 18 C -0.156 4.156 19 O -0.368 6.368 20 Si 0.732 3.268 21 H -0.138 1.138 22 H -0.165 1.165 23 H -0.175 1.175 24 C -0.084 4.084 25 C -0.147 4.147 26 C -0.121 4.121 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.155 0.845 37 H 0.150 0.850 38 H 0.112 0.888 39 H 0.109 0.891 40 H 0.263 0.737 41 H 0.226 0.774 42 H 0.125 0.875 43 H 0.254 0.746 44 H 0.174 0.826 45 H 0.144 0.856 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.301 -4.196 -0.990 6.090 hybrid contribution 1.392 0.222 -1.106 1.792 sum -2.909 -3.974 -2.096 5.353 Atomic orbital electron populations 1.26294 1.21696 1.04450 1.04487 0.77154 0.65123 0.64494 0.61876 1.26306 1.06369 1.19659 1.04754 1.26279 1.06386 1.08495 1.15746 1.27926 1.02891 0.99754 1.10993 1.21386 0.97259 0.95043 0.98370 1.21399 0.99399 1.00516 0.92891 1.19813 1.01021 0.94232 0.95124 1.20405 0.77960 1.01549 0.97427 1.55361 1.15517 1.85787 1.29790 1.00701 0.71977 0.72894 0.72559 1.93562 1.32613 1.87164 1.84075 1.93570 1.79054 1.67445 1.56638 1.29867 1.08178 1.25601 1.15549 1.26166 0.98984 0.99813 0.97136 1.84424 1.24970 1.02016 1.46672 1.24143 1.01445 0.98860 1.06914 1.24082 1.04905 0.99217 0.87445 1.86454 1.84113 1.47788 1.18417 0.86042 0.80852 0.79215 0.80668 1.13799 1.16471 1.17478 1.19662 1.00060 0.89540 0.99115 1.21426 0.99534 0.94275 0.99447 1.21371 0.97373 1.00609 0.92791 0.91452 0.90805 0.91352 0.91384 0.90797 0.91016 0.90874 0.90794 0.91331 0.84545 0.85047 0.88793 0.89130 0.73669 0.77435 0.87527 0.74604 0.82599 0.85574 0.84757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.74 8.65 113.37 0.98 2.72 16 2 Si 1.13 -6.72 12.32 68.60 0.85 -5.87 16 3 C -0.46 1.88 8.53 113.37 0.97 2.84 16 4 C -0.46 2.09 8.53 113.37 0.97 3.06 16 5 C -0.38 0.58 4.59 22.27 0.10 0.69 16 6 C -0.10 0.11 9.29 22.27 0.21 0.32 16 7 C -0.12 0.06 9.70 22.27 0.22 0.27 16 8 C -0.10 -0.01 5.28 -19.86 -0.10 -0.11 16 9 C 0.15 -0.31 6.35 85.63 0.54 0.23 16 10 N -1.10 0.52 5.99 -190.77 -1.14 -0.63 16 11 S 2.73 11.97 5.80 -56.49 -0.33 11.64 16 12 O -0.98 -10.74 17.63 -128.00 -2.26 -13.00 16 13 O -0.98 -8.63 17.11 -128.00 -2.19 -10.82 16 14 C -0.69 -1.88 5.86 21.22 0.12 -1.75 16 15 C -0.08 0.01 10.70 66.72 0.71 0.72 16 16 S 0.16 0.08 20.58 -56.49 -1.16 -1.08 16 17 C -0.20 -0.48 5.76 24.59 0.14 -0.34 16 18 C -0.04 0.08 2.95 71.24 0.21 0.29 16 19 O -0.56 0.87 12.83 -148.98 -1.91 -1.04 16 20 Si 0.91 -2.25 26.25 68.60 1.80 -0.45 16 21 H -0.22 0.91 7.11 99.48 0.71 1.62 16 22 H -0.24 0.26 7.11 99.48 0.71 0.97 16 23 H -0.25 -0.18 7.11 99.48 0.71 0.52 16 24 C -0.06 -0.21 9.56 21.21 0.20 -0.01 16 25 C -0.13 -0.13 9.70 22.27 0.22 0.09 16 26 C -0.10 0.02 9.29 22.27 0.21 0.22 16 27 H 0.07 -0.20 7.96 -2.38 -0.02 -0.22 16 28 H 0.07 -0.31 7.96 -2.39 -0.02 -0.32 16 29 H 0.07 -0.22 7.96 -2.38 -0.02 -0.24 16 30 H 0.07 -0.21 7.96 -2.38 -0.02 -0.23 16 31 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 32 H 0.07 -0.31 7.69 -2.39 -0.02 -0.32 16 33 H 0.07 -0.37 7.69 -2.39 -0.02 -0.39 16 34 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 35 H 0.07 -0.25 7.96 -2.38 -0.02 -0.27 16 36 H 0.14 -0.66 7.43 -2.91 -0.02 -0.68 16 37 H 0.13 -0.43 8.06 -2.91 -0.02 -0.45 16 38 H 0.09 -0.27 7.69 -2.39 -0.02 -0.29 16 39 H 0.09 -0.49 8.09 -2.39 -0.02 -0.51 16 40 H 0.43 -0.89 8.64 -96.75 -0.84 -1.73 16 41 H 0.21 -1.10 8.00 -2.91 -0.02 -1.12 16 42 H 0.11 -0.61 7.96 -2.39 -0.02 -0.63 16 43 H 0.40 -4.39 8.74 -74.06 -0.65 -5.03 16 44 H 0.16 0.55 7.96 -2.91 -0.02 0.53 16 45 H 0.13 -0.07 8.06 -2.91 -0.02 -0.10 16 46 H 0.13 -0.48 7.43 -2.91 -0.02 -0.50 16 Total: 0.00 -21.74 413.76 -0.38 -22.12 By element: Atomic # 1 Polarization: -10.39 SS G_CDS: 0.27 Total: -10.11 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: 5.70 Total: 9.24 kcal Atomic # 7 Polarization: 0.52 SS G_CDS: -1.14 Total: -0.63 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -6.36 Total: -24.86 kcal Atomic # 14 Polarization: -8.97 SS G_CDS: 2.65 Total: -6.32 kcal Atomic # 16 Polarization: 12.05 SS G_CDS: -1.49 Total: 10.56 kcal Total: -21.74 -0.38 -22.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9630768_15065232.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.395 kcal (2) G-P(sol) polarization free energy of solvation -21.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds