Wall clock time and date at job start Mon Mar 8 2021 14:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33388 * 125.20566 * 2 1 4 4 C 1.50702 * 122.53740 * 359.97438 * 3 2 1 5 5 O 1.42897 * 109.47463 * 51.49913 * 4 3 2 6 6 Si 1.86299 * 109.46919 * 291.49988 * 4 3 2 7 7 H 1.48499 * 109.47432 * 185.24531 * 6 4 3 8 8 H 1.48506 * 109.47288 * 305.24483 * 6 4 3 9 9 H 1.48503 * 109.47221 * 65.24583 * 6 4 3 10 10 C 1.38421 * 114.92353 * 180.24646 * 3 2 1 11 11 S 1.76199 * 122.54040 * 179.73219 * 10 3 2 12 12 O 1.42101 * 106.40554 * 193.41849 * 11 10 3 13 13 O 1.42101 * 106.40326 * 326.34289 * 11 10 3 14 14 N 1.65604 * 107.22175 * 79.87847 * 11 10 3 15 15 C 1.46500 * 119.99799 * 64.99889 * 14 11 10 16 16 C 1.50693 * 109.47259 * 165.00247 * 15 14 11 17 17 C 1.38240 * 120.00090 * 269.72817 * 16 15 14 18 18 C 1.38241 * 119.99810 * 179.76614 * 17 16 15 19 19 C 1.38234 * 120.00065 * 0.50581 * 18 17 16 20 20 Si 1.86795 * 119.99906 * 179.72457 * 19 18 17 21 21 C 1.86298 * 109.47279 * 270.02424 * 20 19 18 22 22 C 1.86303 * 109.47163 * 30.02333 * 20 19 18 23 23 C 1.86304 * 109.46882 * 150.02102 * 20 19 18 24 24 C 1.38235 * 120.00182 * 359.74817 * 19 18 17 25 25 C 1.38234 * 119.99922 * 90.00012 * 16 15 14 26 26 C 1.33391 * 114.91836 * 359.49358 * 10 3 2 27 27 C 1.50704 * 125.20077 * 180.20377 * 26 10 3 28 28 S 1.75879 * 109.59366 * 0.47862 * 26 10 3 29 29 H 1.09002 * 109.47096 * 84.70932 * 1 2 3 30 30 H 1.09000 * 109.47065 * 204.71540 * 1 2 3 31 31 H 1.09004 * 109.47375 * 324.71553 * 1 2 3 32 32 H 1.09000 * 109.47307 * 171.50379 * 4 3 2 33 33 H 0.96704 * 113.99630 * 56.85086 * 5 4 3 34 34 H 0.96993 * 120.00553 * 245.00778 * 14 11 10 35 35 H 1.09007 * 109.47348 * 285.00557 * 15 14 11 36 36 H 1.09004 * 109.47410 * 45.00192 * 15 14 11 37 37 H 1.07995 * 119.99864 * 0.02562 * 17 16 15 38 38 H 1.07998 * 119.99308 * 180.22997 * 18 17 16 39 39 H 1.08995 * 109.47361 * 59.99953 * 21 20 19 40 40 H 1.09006 * 109.46957 * 180.02562 * 21 20 19 41 41 H 1.09004 * 109.46594 * 299.99767 * 21 20 19 42 42 H 1.09005 * 109.47158 * 59.99808 * 22 20 19 43 43 H 1.09001 * 109.47363 * 179.97438 * 22 20 19 44 44 H 1.09005 * 109.47088 * 299.99865 * 22 20 19 45 45 H 1.08996 * 109.46913 * 60.00629 * 23 20 19 46 46 H 1.09001 * 109.46862 * 180.02562 * 23 20 19 47 47 H 1.08995 * 109.47336 * 299.99572 * 23 20 19 48 48 H 1.07990 * 120.00439 * 179.97438 * 24 19 18 49 49 H 1.08001 * 120.00469 * 0.02562 * 25 16 15 50 50 H 1.09002 * 109.47104 * 180.33576 * 27 26 10 51 51 H 1.08996 * 109.47008 * 300.33901 * 27 26 10 52 52 H 1.09005 * 109.46581 * 60.34052 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 1.7051 2.4846 -0.0006 5 8 0.7481 2.6082 1.0534 6 14 0.8748 2.8151 -1.6352 7 1 0.4239 4.2291 -1.6846 8 1 1.8362 2.5633 -2.7387 9 1 -0.2977 1.9162 -1.7855 10 6 3.6379 0.8428 -0.0054 11 16 4.8356 2.1352 -0.0133 12 8 6.0795 1.5276 -0.3338 13 8 4.2728 3.1992 -0.7687 14 7 4.9717 2.6871 1.5421 15 6 5.4952 1.8058 2.5888 16 6 5.8628 2.6258 3.7985 17 6 7.1399 3.1401 3.9228 18 6 7.4757 3.8963 5.0302 19 6 6.5375 4.1296 6.0182 20 14 6.9935 5.1450 7.5182 21 6 7.6591 4.0234 8.8485 22 6 8.2946 6.3939 7.0506 23 6 5.4818 6.0307 8.1515 24 6 5.2619 3.6109 5.8965 25 6 4.9246 2.8590 4.7865 26 6 3.9750 -0.4478 0.0009 27 6 5.3860 -0.9771 0.0014 28 16 2.5209 -1.4372 0.0006 29 1 -0.3633 0.0948 -1.0233 30 1 -0.3633 -0.9335 0.4297 31 1 -0.3634 0.8389 0.5936 32 1 2.5081 3.2059 0.1514 33 1 1.1000 2.4021 1.9302 34 1 4.7048 3.5937 1.7602 35 1 4.7341 1.0750 2.8628 36 1 6.3798 1.2875 2.2186 37 1 7.8741 2.9545 3.1528 38 1 8.4724 4.3012 5.1254 39 1 8.5436 3.5053 8.4780 40 1 7.9248 4.6160 9.7240 41 1 6.8979 3.2928 9.1221 42 1 7.9051 7.0501 6.2722 43 1 8.5604 6.9868 7.9258 44 1 9.1791 5.8757 6.6801 45 1 4.7207 5.3001 8.4252 46 1 5.7480 6.6236 9.0266 47 1 5.0925 6.6870 7.3733 48 1 4.5291 3.7927 6.6685 49 1 3.9282 2.4532 4.6917 50 1 5.3653 -2.0669 0.0012 51 1 5.9070 -0.6234 -0.8883 52 1 5.9062 -0.6238 0.8918 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_9630768_15065288.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:59:29 Heat of formation + Delta-G solvation = -99.203714 kcal Electronic energy + Delta-G solvation = -33488.254468 eV Core-core repulsion = 29215.422161 eV Total energy + Delta-G solvation = -4272.832307 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 413.111 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -40.32451 -40.24979 -38.48937 -37.14211 -36.91154 -36.46545 -34.15192 -31.94030 -31.92500 -30.88107 -29.59259 -28.48885 -28.45722 -28.02065 -26.65038 -25.88104 -23.53596 -23.26370 -22.23292 -20.82287 -20.00067 -18.99682 -18.78804 -18.17011 -17.77711 -17.03628 -16.89701 -16.52710 -16.29347 -15.97337 -15.67357 -15.30576 -15.23275 -14.88712 -14.54176 -14.48940 -14.43094 -14.33413 -14.24358 -14.22210 -14.19499 -14.08119 -13.86772 -13.67996 -13.49340 -13.43024 -13.30964 -13.30279 -13.16451 -13.14761 -13.10845 -12.83211 -12.79364 -12.61738 -12.54375 -12.04061 -12.01420 -11.76571 -11.69940 -11.40725 -11.08844 -10.95191 -10.91349 -10.86979 -10.72727 -10.00785 -9.85003 -9.72973 -9.45425 -0.79954 -0.43277 0.17604 0.39460 0.47608 0.71294 0.82739 1.33462 1.65498 1.67251 1.75390 1.79965 1.85610 2.04451 2.11278 2.49505 2.66317 2.88094 3.24668 3.44118 3.55515 3.64955 3.77336 3.81265 4.01447 4.04116 4.12072 4.19542 4.22004 4.24022 4.43470 4.47271 4.49261 4.58622 4.62657 4.63298 4.65734 4.67193 4.70928 4.71236 4.71690 4.72364 4.72901 4.93937 4.94919 5.06478 5.09732 5.11563 5.24087 5.34723 5.41435 5.45634 5.49456 5.56531 5.57126 5.79026 6.05295 6.46922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.165 4.165 3 C -0.083 4.083 4 C -0.088 4.088 5 O -0.531 6.531 6 Si 1.009 2.991 7 H -0.248 1.248 8 H -0.245 1.245 9 H -0.248 1.248 10 C -0.686 4.686 11 S 2.704 3.296 12 O -0.949 6.949 13 O -0.949 6.949 14 N -1.112 6.112 15 C 0.158 3.842 16 C -0.094 4.094 17 C -0.111 4.111 18 C -0.090 4.090 19 C -0.363 4.363 20 Si 1.059 2.941 21 C -0.450 4.450 22 C -0.450 4.450 23 C -0.450 4.450 24 C -0.090 4.090 25 C -0.113 4.113 26 C -0.052 4.052 27 C -0.111 4.111 28 S 0.155 5.845 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.367 0.633 34 H 0.421 0.579 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.070 0.930 48 H 0.122 0.878 49 H 0.121 0.879 50 H 0.078 0.922 51 H 0.110 0.890 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.288 -1.692 5.071 5.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.283 4.283 3 C -0.094 4.094 4 C -0.198 4.198 5 O -0.336 6.336 6 Si 0.827 3.173 7 H -0.171 1.171 8 H -0.169 1.169 9 H -0.171 1.171 10 C -0.786 4.786 11 S 2.792 3.208 12 O -0.938 6.938 13 O -0.939 6.939 14 N -0.872 5.872 15 C 0.033 3.967 16 C -0.096 4.096 17 C -0.130 4.130 18 C -0.108 4.108 19 C -0.405 4.405 20 Si 1.251 2.749 21 C -0.557 4.557 22 C -0.558 4.558 23 C -0.558 4.558 24 C -0.108 4.108 25 C -0.132 4.132 26 C -0.173 4.173 27 C -0.169 4.169 28 S 0.422 5.578 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.121 0.879 32 H 0.108 0.892 33 H 0.214 0.786 34 H 0.257 0.743 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.091 0.909 47 H 0.090 0.910 48 H 0.140 0.860 49 H 0.139 0.861 50 H 0.097 0.903 51 H 0.128 0.872 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.320 -2.918 2.963 4.171 hybrid contribution 0.290 0.824 1.285 1.554 sum -0.029 -2.094 4.248 4.736 Atomic orbital electron populations 1.20755 0.86820 1.04434 1.04051 1.24446 1.00545 0.94551 1.08793 1.18518 0.90215 0.97021 1.03599 1.25451 0.98279 0.92714 1.03315 1.86689 1.37733 1.91653 1.17548 0.84520 0.79116 0.81282 0.72419 1.17113 1.16858 1.17102 1.29503 1.11845 1.13343 1.23872 1.01675 0.73621 0.73219 0.72306 1.93593 1.40392 1.77905 1.81955 1.93568 1.79094 1.53524 1.67753 1.55626 1.80522 1.24162 1.26923 1.20232 0.99398 0.91167 0.85913 1.19706 0.94557 0.99843 0.95458 1.21217 0.95893 0.97590 0.98282 1.21111 0.99365 0.96811 0.93470 1.27450 0.96216 1.06088 1.10703 0.78185 0.67018 0.65779 0.63919 1.26128 1.06629 1.10396 1.12536 1.26145 1.12203 1.11751 1.05704 1.26138 1.14988 1.08185 1.06443 1.21088 0.96458 0.96111 0.97136 1.21154 0.98896 0.98957 0.94211 1.24612 1.00771 0.94966 0.96954 1.20938 0.88153 1.01807 1.06034 1.84452 0.95245 1.08807 1.69302 0.90090 0.91182 0.87865 0.89176 0.78601 0.74326 0.90831 0.89285 0.85903 0.85935 0.91157 0.91021 0.91185 0.91044 0.90941 0.91159 0.91186 0.90941 0.91044 0.85990 0.86117 0.90293 0.87192 0.88929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.01 8.66 36.00 0.31 0.32 16 2 C -0.17 -0.16 6.10 -36.01 -0.22 -0.38 16 3 C -0.08 -0.12 4.25 -106.25 -0.45 -0.58 16 4 C -0.09 -0.14 2.26 36.01 0.08 -0.06 16 5 O -0.53 -0.06 10.42 -35.23 -0.37 -0.42 16 6 Si 1.01 2.90 26.69 -169.99 -4.54 -1.63 16 7 H -0.25 -0.83 7.11 56.52 0.40 -0.43 16 8 H -0.25 -0.95 7.11 56.52 0.40 -0.55 16 9 H -0.25 -0.47 5.68 56.52 0.32 -0.15 16 10 C -0.69 -0.89 5.85 -41.21 -0.24 -1.13 16 11 S 2.70 4.34 5.28 -107.50 -0.57 3.77 16 12 O -0.95 -2.99 14.20 -57.17 -0.81 -3.81 16 13 O -0.95 -3.86 14.99 -57.17 -0.86 -4.71 16 14 N -1.11 1.30 5.99 -11.66 -0.07 1.23 16 15 C 0.16 -0.29 6.35 -5.20 -0.03 -0.32 16 16 C -0.09 0.08 5.28 -104.63 -0.55 -0.47 16 17 C -0.11 0.04 9.70 -39.58 -0.38 -0.34 16 18 C -0.09 0.07 9.29 -39.58 -0.37 -0.30 16 19 C -0.36 0.46 4.59 -39.58 -0.18 0.28 16 20 Si 1.06 -3.36 12.32 -169.99 -2.09 -5.46 16 21 C -0.45 0.93 8.65 101.05 0.87 1.80 16 22 C -0.45 1.01 8.53 101.05 0.86 1.87 16 23 C -0.45 1.07 8.53 101.05 0.86 1.93 16 24 C -0.09 0.10 9.29 -39.58 -0.37 -0.27 16 25 C -0.11 0.13 9.70 -39.58 -0.38 -0.25 16 26 C -0.05 -0.03 6.50 -36.00 -0.23 -0.26 16 27 C -0.11 0.10 8.64 36.01 0.31 0.41 16 28 S 0.16 0.01 23.31 -107.50 -2.51 -2.49 16 29 H 0.08 0.01 6.72 -51.93 -0.35 -0.34 16 30 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 31 H 0.10 -0.02 5.86 -51.93 -0.30 -0.33 16 32 H 0.09 0.11 4.95 -51.93 -0.26 -0.15 16 33 H 0.37 -1.15 9.04 45.56 0.41 -0.73 16 34 H 0.42 -0.95 8.64 -34.48 -0.30 -1.24 16 35 H 0.07 -0.23 8.09 -51.93 -0.42 -0.65 16 36 H 0.09 -0.19 7.60 -51.93 -0.39 -0.58 16 37 H 0.12 -0.16 8.06 -52.49 -0.42 -0.58 16 38 H 0.12 -0.28 7.43 -52.49 -0.39 -0.67 16 39 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 40 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 41 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 42 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 43 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 44 H 0.07 -0.17 7.69 -51.93 -0.40 -0.56 16 45 H 0.07 -0.18 7.69 -51.93 -0.40 -0.58 16 46 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 47 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 48 H 0.12 -0.34 7.43 -52.49 -0.39 -0.73 16 49 H 0.12 -0.33 8.06 -52.49 -0.42 -0.75 16 50 H 0.08 -0.20 8.14 -51.93 -0.42 -0.62 16 51 H 0.11 0.00 7.01 -51.93 -0.36 -0.36 16 52 H 0.09 -0.19 7.79 -51.93 -0.40 -0.59 16 LS Contribution 439.35 15.07 6.62 6.62 Total: 0.00 -6.97 439.35 -12.72 -19.69 By element: Atomic # 1 Polarization: -7.64 SS G_CDS: -7.42 Total: -15.06 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -0.11 Total: 2.26 kcal Atomic # 7 Polarization: 1.30 SS G_CDS: -0.07 Total: 1.23 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: -2.04 Total: -8.94 kcal Atomic # 14 Polarization: -0.46 SS G_CDS: -6.63 Total: -7.09 kcal Atomic # 16 Polarization: 4.35 SS G_CDS: -3.07 Total: 1.28 kcal Total LS contribution 6.62 Total: 6.62 kcal Total: -6.97 -12.72 -19.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9630768_15065288.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.512 kcal (2) G-P(sol) polarization free energy of solvation -6.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds