Wall clock time and date at job start Mon Mar 8 2021 14:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33388 * 125.20566 * 2 1 4 4 C 1.50702 * 122.53740 * 359.97438 * 3 2 1 5 5 O 1.42897 * 109.47463 * 51.49913 * 4 3 2 6 6 Si 1.86299 * 109.46919 * 291.49988 * 4 3 2 7 7 H 1.48499 * 109.47432 * 185.24531 * 6 4 3 8 8 H 1.48506 * 109.47288 * 305.24483 * 6 4 3 9 9 H 1.48503 * 109.47221 * 65.24583 * 6 4 3 10 10 C 1.38421 * 114.92353 * 180.24646 * 3 2 1 11 11 S 1.76199 * 122.54040 * 179.73219 * 10 3 2 12 12 O 1.42101 * 106.40554 * 193.41849 * 11 10 3 13 13 O 1.42101 * 106.40326 * 326.34289 * 11 10 3 14 14 N 1.65604 * 107.22175 * 79.87847 * 11 10 3 15 15 C 1.46500 * 119.99799 * 64.99889 * 14 11 10 16 16 C 1.50693 * 109.47259 * 165.00247 * 15 14 11 17 17 C 1.38240 * 120.00090 * 269.72817 * 16 15 14 18 18 C 1.38241 * 119.99810 * 179.76614 * 17 16 15 19 19 C 1.38234 * 120.00065 * 0.50581 * 18 17 16 20 20 Si 1.86795 * 119.99906 * 179.72457 * 19 18 17 21 21 C 1.86298 * 109.47279 * 270.02424 * 20 19 18 22 22 C 1.86303 * 109.47163 * 30.02333 * 20 19 18 23 23 C 1.86304 * 109.46882 * 150.02102 * 20 19 18 24 24 C 1.38235 * 120.00182 * 359.74817 * 19 18 17 25 25 C 1.38234 * 119.99922 * 90.00012 * 16 15 14 26 26 C 1.33391 * 114.91836 * 359.49358 * 10 3 2 27 27 C 1.50704 * 125.20077 * 180.20377 * 26 10 3 28 28 S 1.75879 * 109.59366 * 0.47862 * 26 10 3 29 29 H 1.09002 * 109.47096 * 84.70932 * 1 2 3 30 30 H 1.09000 * 109.47065 * 204.71540 * 1 2 3 31 31 H 1.09004 * 109.47375 * 324.71553 * 1 2 3 32 32 H 1.09000 * 109.47307 * 171.50379 * 4 3 2 33 33 H 0.96704 * 113.99630 * 56.85086 * 5 4 3 34 34 H 0.96993 * 120.00553 * 245.00778 * 14 11 10 35 35 H 1.09007 * 109.47348 * 285.00557 * 15 14 11 36 36 H 1.09004 * 109.47410 * 45.00192 * 15 14 11 37 37 H 1.07995 * 119.99864 * 0.02562 * 17 16 15 38 38 H 1.07998 * 119.99308 * 180.22997 * 18 17 16 39 39 H 1.08995 * 109.47361 * 59.99953 * 21 20 19 40 40 H 1.09006 * 109.46957 * 180.02562 * 21 20 19 41 41 H 1.09004 * 109.46594 * 299.99767 * 21 20 19 42 42 H 1.09005 * 109.47158 * 59.99808 * 22 20 19 43 43 H 1.09001 * 109.47363 * 179.97438 * 22 20 19 44 44 H 1.09005 * 109.47088 * 299.99865 * 22 20 19 45 45 H 1.08996 * 109.46913 * 60.00629 * 23 20 19 46 46 H 1.09001 * 109.46862 * 180.02562 * 23 20 19 47 47 H 1.08995 * 109.47336 * 299.99572 * 23 20 19 48 48 H 1.07990 * 120.00439 * 179.97438 * 24 19 18 49 49 H 1.08001 * 120.00469 * 0.02562 * 25 16 15 50 50 H 1.09002 * 109.47104 * 180.33576 * 27 26 10 51 51 H 1.08996 * 109.47008 * 300.33901 * 27 26 10 52 52 H 1.09005 * 109.46581 * 60.34052 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 1.7051 2.4846 -0.0006 5 8 0.7481 2.6082 1.0534 6 14 0.8748 2.8151 -1.6352 7 1 0.4239 4.2291 -1.6846 8 1 1.8362 2.5633 -2.7387 9 1 -0.2977 1.9162 -1.7855 10 6 3.6379 0.8428 -0.0054 11 16 4.8356 2.1352 -0.0133 12 8 6.0795 1.5276 -0.3338 13 8 4.2728 3.1992 -0.7687 14 7 4.9717 2.6871 1.5421 15 6 5.4952 1.8058 2.5888 16 6 5.8628 2.6258 3.7985 17 6 7.1399 3.1401 3.9228 18 6 7.4757 3.8963 5.0302 19 6 6.5375 4.1296 6.0182 20 14 6.9935 5.1450 7.5182 21 6 7.6591 4.0234 8.8485 22 6 8.2946 6.3939 7.0506 23 6 5.4818 6.0307 8.1515 24 6 5.2619 3.6109 5.8965 25 6 4.9246 2.8590 4.7865 26 6 3.9750 -0.4478 0.0009 27 6 5.3860 -0.9771 0.0014 28 16 2.5209 -1.4372 0.0006 29 1 -0.3633 0.0948 -1.0233 30 1 -0.3633 -0.9335 0.4297 31 1 -0.3634 0.8389 0.5936 32 1 2.5081 3.2059 0.1514 33 1 1.1000 2.4021 1.9302 34 1 4.7048 3.5937 1.7602 35 1 4.7341 1.0750 2.8628 36 1 6.3798 1.2875 2.2186 37 1 7.8741 2.9545 3.1528 38 1 8.4724 4.3012 5.1254 39 1 8.5436 3.5053 8.4780 40 1 7.9248 4.6160 9.7240 41 1 6.8979 3.2928 9.1221 42 1 7.9051 7.0501 6.2722 43 1 8.5604 6.9868 7.9258 44 1 9.1791 5.8757 6.6801 45 1 4.7207 5.3001 8.4252 46 1 5.7480 6.6236 9.0266 47 1 5.0925 6.6870 7.3733 48 1 4.5291 3.7927 6.6685 49 1 3.9282 2.4532 4.6917 50 1 5.3653 -2.0669 0.0012 51 1 5.9070 -0.6234 -0.8883 52 1 5.9062 -0.6238 0.8918 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_9630768_15065288.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:59:27 Heat of formation + Delta-G solvation = -92.787648 kcal Electronic energy + Delta-G solvation = -33487.976246 eV Core-core repulsion = 29215.422161 eV Total energy + Delta-G solvation = -4272.554086 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 413.111 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.33835 -40.12985 -38.65254 -37.18949 -37.07156 -36.37496 -34.13789 -31.81279 -31.79834 -30.85452 -29.39615 -28.28251 -28.26049 -28.04535 -26.52408 -25.89886 -23.40044 -23.28624 -22.10267 -20.87435 -20.03883 -19.04085 -18.81716 -18.18087 -17.71533 -17.08430 -16.83667 -16.64881 -16.18055 -15.92901 -15.62093 -15.35488 -15.30089 -14.89549 -14.49428 -14.41598 -14.33780 -14.28650 -14.15991 -14.10164 -14.05285 -13.89603 -13.69549 -13.60720 -13.49908 -13.39992 -13.29084 -13.25406 -13.10721 -13.04773 -12.95738 -12.90716 -12.80591 -12.63630 -12.45897 -12.31101 -11.92780 -11.88893 -11.73383 -11.48135 -10.91643 -10.89980 -10.74781 -10.74544 -10.62420 -10.01483 -9.73334 -9.60271 -9.48101 -0.87262 -0.46505 0.28172 0.40271 0.59226 0.68383 0.74432 1.16874 1.42476 1.51671 1.86626 1.87839 1.96557 2.03854 2.16152 2.57752 2.68834 2.99992 3.17400 3.44591 3.63954 3.68240 3.78541 3.96438 4.02528 4.11928 4.20498 4.24547 4.32924 4.40499 4.51667 4.56497 4.61302 4.65063 4.69367 4.79151 4.79998 4.85197 4.86034 4.89185 4.90188 4.91236 4.91824 4.94960 5.08732 5.11986 5.14893 5.24345 5.25078 5.48468 5.60309 5.63261 5.68582 5.68750 5.73652 5.91238 6.19959 6.63935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.174 4.174 3 C -0.092 4.092 4 C -0.079 4.079 5 O -0.534 6.534 6 Si 0.998 3.002 7 H -0.259 1.259 8 H -0.267 1.267 9 H -0.232 1.232 10 C -0.694 4.694 11 S 2.713 3.287 12 O -0.968 6.968 13 O -0.979 6.979 14 N -1.101 6.101 15 C 0.155 3.845 16 C -0.099 4.099 17 C -0.128 4.128 18 C -0.105 4.105 19 C -0.375 4.375 20 Si 1.125 2.875 21 C -0.463 4.463 22 C -0.465 4.465 23 C -0.462 4.462 24 C -0.102 4.102 25 C -0.120 4.120 26 C -0.054 4.054 27 C -0.117 4.117 28 S 0.178 5.822 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.383 0.617 34 H 0.427 0.573 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.125 0.875 38 H 0.133 0.867 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.072 0.928 47 H 0.068 0.932 48 H 0.137 0.863 49 H 0.137 0.863 50 H 0.096 0.904 51 H 0.099 0.901 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.196 -2.566 6.390 6.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.292 4.292 3 C -0.102 4.102 4 C -0.191 4.191 5 O -0.341 6.341 6 Si 0.818 3.182 7 H -0.183 1.183 8 H -0.192 1.192 9 H -0.155 1.155 10 C -0.794 4.794 11 S 2.802 3.198 12 O -0.958 6.958 13 O -0.969 6.969 14 N -0.864 5.864 15 C 0.030 3.970 16 C -0.101 4.101 17 C -0.147 4.147 18 C -0.122 4.122 19 C -0.415 4.415 20 Si 1.312 2.688 21 C -0.569 4.569 22 C -0.572 4.572 23 C -0.569 4.569 24 C -0.120 4.120 25 C -0.139 4.139 26 C -0.175 4.175 27 C -0.175 4.175 28 S 0.445 5.555 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.123 0.877 32 H 0.109 0.891 33 H 0.233 0.767 34 H 0.263 0.737 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.143 0.857 38 H 0.150 0.850 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.092 0.908 46 H 0.091 0.909 47 H 0.087 0.913 48 H 0.155 0.845 49 H 0.154 0.846 50 H 0.115 0.885 51 H 0.118 0.882 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.807 -3.788 4.278 5.771 hybrid contribution 0.449 1.075 0.893 1.468 sum -0.358 -2.713 5.171 5.851 Atomic orbital electron populations 1.20806 0.86195 1.05279 1.03990 1.24645 1.01192 0.94875 1.08476 1.18527 0.90380 0.97047 1.04278 1.25147 0.98020 0.93076 1.02838 1.86641 1.37501 1.91695 1.18264 0.84655 0.79393 0.80974 0.73208 1.18271 1.19152 1.15500 1.29383 1.11611 1.13466 1.24949 1.01145 0.73212 0.72782 0.72625 1.93567 1.41392 1.78182 1.82663 1.93530 1.79513 1.54742 1.69142 1.55377 1.80408 1.24524 1.26069 1.20376 1.00094 0.91196 0.85291 1.19793 0.94487 1.00010 0.95809 1.21414 0.96443 0.98144 0.98713 1.21354 1.00157 0.97059 0.93671 1.27873 0.96217 1.06160 1.11296 0.77174 0.65555 0.64056 0.62025 1.26295 1.06609 1.10796 1.13239 1.26322 1.12890 1.12261 1.05693 1.26272 1.15663 1.08439 1.06489 1.21393 0.96906 0.96070 0.97647 1.21409 0.99576 0.98842 0.94084 1.24832 1.01632 0.94879 0.96194 1.21052 0.87370 1.03002 1.06088 1.84353 0.94493 1.07960 1.68716 0.90429 0.89830 0.87709 0.89112 0.76724 0.73656 0.89072 0.89115 0.85743 0.84966 0.91480 0.90878 0.91288 0.91401 0.90863 0.91067 0.90775 0.90882 0.91308 0.84491 0.84558 0.88508 0.88239 0.87768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.10 8.66 71.23 0.62 0.72 16 2 C -0.17 -0.24 6.10 24.59 0.15 -0.09 16 3 C -0.09 -0.27 4.25 -20.92 -0.09 -0.36 16 4 C -0.08 -0.28 2.26 71.24 0.16 -0.12 16 5 O -0.53 0.15 10.42 -148.98 -1.55 -1.40 16 6 Si 1.00 6.89 26.69 68.60 1.83 8.72 16 7 H -0.26 -2.17 7.11 99.48 0.71 -1.46 16 8 H -0.27 -2.72 7.11 99.48 0.71 -2.02 16 9 H -0.23 -0.97 5.68 99.48 0.57 -0.40 16 10 C -0.69 -1.86 5.85 21.22 0.12 -1.73 16 11 S 2.71 10.72 5.28 -56.49 -0.30 10.42 16 12 O -0.97 -6.92 14.20 -128.00 -1.82 -8.74 16 13 O -0.98 -9.36 14.99 -128.00 -1.92 -11.28 16 14 N -1.10 2.39 5.99 -190.79 -1.14 1.24 16 15 C 0.16 -0.62 6.35 85.63 0.54 -0.07 16 16 C -0.10 0.19 5.28 -19.87 -0.10 0.09 16 17 C -0.13 0.05 9.70 22.27 0.22 0.27 16 18 C -0.10 0.13 9.29 22.27 0.21 0.34 16 19 C -0.38 1.04 4.59 22.27 0.10 1.14 16 20 Si 1.12 -7.53 12.32 68.60 0.85 -6.68 16 21 C -0.46 2.04 8.65 113.37 0.98 3.02 16 22 C -0.46 2.09 8.53 113.37 0.97 3.05 16 23 C -0.46 2.45 8.53 113.37 0.97 3.42 16 24 C -0.10 0.30 9.29 22.27 0.21 0.50 16 25 C -0.12 0.36 9.70 22.27 0.22 0.57 16 26 C -0.05 -0.03 6.50 24.59 0.16 0.13 16 27 C -0.12 0.26 8.64 71.24 0.62 0.87 16 28 S 0.18 -0.13 23.31 -56.49 -1.32 -1.45 16 29 H 0.08 -0.02 6.72 -2.39 -0.02 -0.04 16 30 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 31 H 0.10 -0.13 5.86 -2.38 -0.01 -0.15 16 32 H 0.09 0.29 4.95 -2.39 -0.01 0.28 16 33 H 0.38 -2.80 9.04 -74.05 -0.67 -3.47 16 34 H 0.43 -1.78 8.64 -96.75 -0.84 -2.61 16 35 H 0.09 -0.68 8.09 -2.38 -0.02 -0.70 16 36 H 0.09 -0.39 7.60 -2.39 -0.02 -0.41 16 37 H 0.12 -0.21 8.06 -2.91 -0.02 -0.24 16 38 H 0.13 -0.57 7.43 -2.91 -0.02 -0.59 16 39 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 40 H 0.07 -0.34 7.96 -2.38 -0.02 -0.36 16 41 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 42 H 0.07 -0.24 7.96 -2.38 -0.02 -0.26 16 43 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 44 H 0.07 -0.33 7.69 -2.38 -0.02 -0.35 16 45 H 0.07 -0.45 7.69 -2.39 -0.02 -0.46 16 46 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 47 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 48 H 0.14 -0.91 7.43 -2.92 -0.02 -0.93 16 49 H 0.14 -0.93 8.06 -2.91 -0.02 -0.95 16 50 H 0.10 -0.59 8.14 -2.39 -0.02 -0.61 16 51 H 0.10 0.04 7.01 -2.39 -0.02 0.03 16 52 H 0.10 -0.49 7.79 -2.38 -0.02 -0.51 16 Total: 0.00 -16.33 439.35 0.73 -15.60 By element: Atomic # 1 Polarization: -18.25 SS G_CDS: 0.06 Total: -18.19 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: 6.04 Total: 11.75 kcal Atomic # 7 Polarization: 2.39 SS G_CDS: -1.14 Total: 1.24 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -5.29 Total: -21.42 kcal Atomic # 14 Polarization: -0.63 SS G_CDS: 2.68 Total: 2.04 kcal Atomic # 16 Polarization: 10.59 SS G_CDS: -1.62 Total: 8.98 kcal Total: -16.33 0.73 -15.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9630768_15065288.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.185 kcal (2) G-P(sol) polarization free energy of solvation -16.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds