Wall clock time and date at job start Mon Mar 8 2021 15:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86303 * 109.47121 * 2 1 4 4 C 1.86296 * 109.47232 * 239.99504 * 2 1 3 5 5 C 1.86805 * 109.46817 * 119.99418 * 2 1 3 6 6 C 1.38231 * 120.00144 * 89.99917 * 5 2 1 7 7 C 1.38232 * 120.00250 * 180.02562 * 6 5 2 8 8 C 1.38231 * 120.00143 * 0.02562 * 7 6 5 9 9 C 1.50693 * 120.00255 * 179.97438 * 8 7 6 10 10 N 1.46500 * 109.47584 * 89.99825 * 9 8 7 11 11 S 1.65597 * 120.00174 * 164.95859 * 10 9 8 12 12 O 1.42095 * 106.40552 * 309.91709 * 11 10 9 13 13 O 1.42105 * 106.40137 * 176.99899 * 11 10 9 14 14 C 1.76203 * 107.21829 * 63.46249 * 11 10 9 15 15 C 1.38210 * 119.99980 * 243.84951 * 14 11 10 16 16 C 1.38250 * 120.00017 * 180.22783 * 15 14 11 17 17 C 1.38215 * 120.00085 * 359.81280 * 16 15 14 18 18 C 1.38255 * 120.00187 * 359.97438 * 17 16 15 19 19 C 1.38217 * 119.99488 * 359.97438 * 18 17 16 20 20 C 1.50707 * 119.99786 * 180.02562 * 19 18 17 21 21 O 1.42900 * 109.47198 * 256.04218 * 20 19 18 22 22 Si 1.86303 * 109.46935 * 16.04188 * 20 19 18 23 23 H 1.48499 * 109.47151 * 299.99525 * 22 20 19 24 24 H 1.48504 * 109.46857 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47170 * 60.00357 * 22 20 19 26 26 C 1.38237 * 119.99751 * 0.25053 * 8 7 6 27 27 C 1.38238 * 120.00228 * 359.49706 * 26 8 7 28 28 H 1.09000 * 109.47406 * 300.01098 * 1 2 3 29 29 H 1.09007 * 109.46751 * 60.00443 * 1 2 3 30 30 H 1.08995 * 109.47278 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46781 * 179.97438 * 3 2 1 32 32 H 1.09009 * 109.46442 * 299.99342 * 3 2 1 33 33 H 1.08989 * 109.47479 * 59.99486 * 3 2 1 34 34 H 1.09002 * 109.47116 * 299.99809 * 4 2 1 35 35 H 1.08993 * 109.47340 * 60.00216 * 4 2 1 36 36 H 1.09006 * 109.46730 * 180.02562 * 4 2 1 37 37 H 1.08004 * 119.99792 * 0.02562 * 6 5 2 38 38 H 1.08000 * 119.99678 * 179.97438 * 7 6 5 39 39 H 1.08996 * 109.47205 * 329.99767 * 9 8 7 40 40 H 1.09005 * 109.47390 * 210.00226 * 9 8 7 41 41 H 0.97000 * 119.99485 * 344.96635 * 10 9 8 42 42 H 1.07999 * 120.00112 * 0.06094 * 15 14 11 43 43 H 1.08005 * 120.00369 * 179.83095 * 16 15 14 44 44 H 1.07999 * 120.00458 * 179.97438 * 17 16 15 45 45 H 1.07998 * 120.00302 * 180.02562 * 18 17 16 46 46 H 1.08998 * 109.46790 * 136.04064 * 20 19 18 47 47 H 0.96696 * 114.00103 * 174.99344 * 21 20 19 48 48 H 1.08006 * 119.99960 * 179.72562 * 26 8 7 49 49 H 1.07999 * 120.00231 * 180.22736 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8783 -1.5210 5 6 2.4856 -0.8805 1.5254 6 6 2.7159 -2.2430 1.4913 7 6 3.1761 -2.8947 2.6202 8 6 3.4055 -2.1839 3.7834 9 6 3.9066 -2.8943 5.0142 10 7 5.3716 -2.8945 5.0156 11 16 6.1983 -3.2648 6.4019 12 8 5.6406 -2.4573 7.4296 13 8 7.5782 -3.2479 6.0629 14 6 5.8072 -4.9331 6.8125 15 6 5.1329 -5.2164 7.9852 16 6 4.8303 -6.5257 8.3096 17 6 5.1986 -7.5512 7.4593 18 6 5.8693 -7.2676 6.2841 19 6 6.1709 -5.9585 5.9593 20 6 6.9015 -5.6492 4.6779 21 8 8.2664 -5.3426 4.9698 22 14 6.8253 -7.1279 3.5472 23 1 7.4631 -8.2926 4.2118 24 1 7.5457 -6.8233 2.2848 25 1 5.4070 -7.4464 3.2438 26 6 3.1697 -0.8222 3.8191 27 6 2.7145 -0.1696 2.6887 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 3.5740 1.7564 0.0005 32 1 2.1207 2.2702 -0.8902 33 1 2.1207 2.2703 0.8898 34 1 2.1207 -1.9060 -1.5209 35 1 2.1208 -0.3646 -2.4110 36 1 3.5741 -0.8787 -1.5207 37 1 2.5363 -2.7985 0.5827 38 1 3.3557 -3.9593 2.5936 39 1 3.5432 -3.9219 5.0139 40 1 3.5425 -2.3805 5.9039 41 1 5.8574 -2.6776 4.2045 42 1 4.8448 -4.4151 8.6494 43 1 4.3057 -6.7474 9.2273 44 1 4.9626 -8.5742 7.7129 45 1 6.1568 -8.0689 5.6195 46 1 6.4334 -4.7942 4.1901 47 1 8.8157 -5.2079 4.1855 48 1 3.3447 -0.2676 4.7292 49 1 2.5338 0.8948 2.7156 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_9630768_2726874.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 15:03:27 Heat of formation + Delta-G solvation = -89.136811 kcal Electronic energy + Delta-G solvation = -30569.815213 eV Core-core repulsion = 26519.342432 eV Total energy + Delta-G solvation = -4050.472782 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 379.123 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.65808 -40.23786 -38.26567 -37.41098 -36.66125 -36.39646 -32.99208 -32.42503 -31.91564 -31.86117 -29.58637 -28.48525 -28.44960 -27.04432 -26.51209 -24.43618 -23.50699 -22.71345 -22.18875 -20.56578 -19.06174 -18.55959 -18.47740 -17.81463 -17.24990 -16.97189 -16.55214 -16.31989 -16.02131 -15.87026 -15.56616 -15.22428 -15.12930 -14.54924 -14.48947 -14.39780 -14.24710 -14.22099 -14.07994 -13.99315 -13.84313 -13.62765 -13.49250 -13.38479 -13.30151 -13.16127 -13.14125 -13.09553 -12.88720 -12.78608 -12.47598 -12.30141 -12.08901 -12.04462 -11.99039 -11.63145 -11.07799 -10.94666 -10.88235 -10.71855 -10.48159 -10.32203 -10.07899 -9.82647 -9.70483 -0.62065 -0.25387 0.09636 0.23172 0.50016 0.92210 1.29183 1.33394 1.66730 1.72980 1.80734 1.86170 2.05026 2.36970 2.50381 2.80050 2.91416 3.19084 3.40152 3.61637 3.67329 3.80151 3.85211 3.90400 3.97420 4.07538 4.17703 4.26875 4.28710 4.34861 4.47134 4.53777 4.64209 4.65989 4.68034 4.70185 4.71345 4.72105 4.72974 4.73847 4.75269 4.97335 4.97800 5.09410 5.12481 5.23019 5.36732 5.42582 5.46456 5.50202 5.58923 5.60193 5.68240 5.87311 6.07997 6.60861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.059 2.941 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.364 4.364 6 C -0.090 4.090 7 C -0.116 4.116 8 C -0.093 4.093 9 C 0.156 3.844 10 N -1.116 6.116 11 S 2.687 3.313 12 O -0.959 6.959 13 O -0.923 6.923 14 C -0.655 4.655 15 C -0.022 4.022 16 C -0.134 4.134 17 C -0.057 4.057 18 C -0.145 4.145 19 C 0.028 3.972 20 C -0.119 4.119 21 O -0.510 6.510 22 Si 0.947 3.053 23 H -0.243 1.243 24 H -0.248 1.248 25 H -0.245 1.245 26 C -0.111 4.111 27 C -0.089 4.089 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.420 0.580 42 H 0.147 0.853 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.132 0.868 46 H 0.074 0.926 47 H 0.380 0.620 48 H 0.123 0.877 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.908 -2.174 -4.196 6.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.251 2.749 3 C -0.558 4.558 4 C -0.557 4.557 5 C -0.406 4.406 6 C -0.108 4.108 7 C -0.135 4.135 8 C -0.094 4.094 9 C 0.031 3.969 10 N -0.877 5.877 11 S 2.776 3.224 12 O -0.949 6.949 13 O -0.913 6.913 14 C -0.741 4.741 15 C -0.041 4.041 16 C -0.153 4.153 17 C -0.075 4.075 18 C -0.163 4.163 19 C 0.027 3.973 20 C -0.229 4.229 21 O -0.316 6.316 22 Si 0.768 3.232 23 H -0.166 1.166 24 H -0.171 1.171 25 H -0.168 1.168 26 C -0.129 4.129 27 C -0.107 4.107 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.092 0.908 40 H 0.108 0.892 41 H 0.255 0.745 42 H 0.165 0.835 43 H 0.155 0.845 44 H 0.154 0.846 45 H 0.150 0.850 46 H 0.092 0.908 47 H 0.228 0.772 48 H 0.141 0.859 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.691 -2.491 -3.413 5.611 hybrid contribution 0.082 -0.376 -0.450 0.592 sum -3.609 -2.867 -3.864 6.014 Atomic orbital electron populations 1.26128 1.20477 1.04563 1.04520 0.78186 0.66863 0.66141 0.63730 1.26142 1.06474 1.18582 1.04592 1.26137 1.06451 1.08025 1.15117 1.27439 1.03340 0.99550 1.10224 1.21077 0.97369 0.94645 0.97752 1.21157 0.99708 0.99752 0.92842 1.19734 1.00728 0.94238 0.94711 1.20235 0.78713 1.00519 0.97478 1.55762 1.15220 1.86390 1.30297 1.02267 0.73605 0.73673 0.72889 1.93584 1.79770 1.65490 1.56084 1.93710 1.28747 1.86244 1.82573 1.30802 1.14453 1.24194 1.04611 1.21080 0.91387 0.98176 0.93462 1.21398 1.00897 0.92597 1.00377 1.21462 0.93340 1.00031 0.92689 1.21247 1.00760 0.95742 0.98579 1.18820 0.92619 0.92903 0.92982 1.25065 0.87290 1.10147 1.00428 1.86719 1.16290 1.93275 1.35294 0.85731 0.82253 0.77457 0.77770 1.16629 1.17118 1.16823 1.21229 0.98899 0.93855 0.98954 1.21111 0.97183 0.99788 0.92631 0.91150 0.91041 0.91189 0.91049 0.90960 0.91151 0.91202 0.90950 0.91060 0.86027 0.86133 0.90757 0.89195 0.74461 0.83536 0.84499 0.84612 0.85000 0.90796 0.77230 0.85863 0.85953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.88 8.65 101.05 0.87 1.75 16 2 Si 1.06 -3.27 12.32 -169.99 -2.09 -5.36 16 3 C -0.45 0.97 8.53 101.05 0.86 1.83 16 4 C -0.45 1.08 8.53 101.05 0.86 1.94 16 5 C -0.36 0.40 4.59 -39.58 -0.18 0.22 16 6 C -0.09 0.09 9.29 -39.59 -0.37 -0.28 16 7 C -0.12 0.10 9.70 -39.59 -0.38 -0.28 16 8 C -0.09 0.04 5.28 -104.63 -0.55 -0.51 16 9 C 0.16 -0.16 6.33 -5.20 -0.03 -0.20 16 10 N -1.12 0.54 4.68 -11.66 -0.05 0.48 16 11 S 2.69 7.05 4.98 -107.50 -0.54 6.51 16 12 O -0.96 -4.86 16.49 -57.17 -0.94 -5.81 16 13 O -0.92 -4.78 15.03 -66.40 -1.00 -5.78 16 14 C -0.65 -1.35 5.85 -39.58 -0.23 -1.58 16 15 C -0.02 -0.03 9.55 -39.59 -0.38 -0.40 16 16 C -0.13 0.03 10.05 -39.59 -0.40 -0.37 16 17 C -0.06 0.03 10.05 -39.58 -0.40 -0.37 16 18 C -0.14 -0.09 8.66 -39.58 -0.34 -0.43 16 19 C 0.03 0.04 5.28 -104.62 -0.55 -0.51 16 20 C -0.12 -0.02 1.87 36.01 0.07 0.05 16 21 O -0.51 -0.85 10.60 -57.71 -0.61 -1.46 16 22 Si 0.95 -1.06 25.45 -169.99 -4.33 -5.38 16 23 H -0.24 0.06 6.70 56.52 0.38 0.44 16 24 H -0.25 0.30 7.11 56.52 0.40 0.70 16 25 H -0.25 0.27 7.11 56.52 0.40 0.67 16 26 C -0.11 0.00 9.70 -39.58 -0.38 -0.39 16 27 C -0.09 0.04 9.29 -39.58 -0.37 -0.32 16 28 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 29 H 0.07 -0.15 7.96 -51.92 -0.41 -0.56 16 30 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 31 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 32 H 0.07 -0.16 7.96 -51.92 -0.41 -0.57 16 33 H 0.07 -0.16 7.69 -51.94 -0.40 -0.56 16 34 H 0.07 -0.18 7.69 -51.93 -0.40 -0.58 16 35 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 36 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 37 H 0.12 -0.33 7.43 -52.48 -0.39 -0.72 16 38 H 0.12 -0.31 8.06 -52.49 -0.42 -0.73 16 39 H 0.07 -0.19 8.09 -51.93 -0.42 -0.61 16 40 H 0.09 -0.09 7.73 -51.93 -0.40 -0.49 16 41 H 0.42 -0.83 8.36 -34.47 -0.29 -1.12 16 42 H 0.15 0.03 7.34 -52.49 -0.39 -0.35 16 43 H 0.14 -0.36 8.06 -52.48 -0.42 -0.78 16 44 H 0.14 -0.42 8.06 -52.49 -0.42 -0.84 16 45 H 0.13 -0.12 4.90 -52.49 -0.26 -0.38 16 46 H 0.07 -0.14 5.81 -51.93 -0.30 -0.44 16 47 H 0.38 -0.98 8.62 45.56 0.39 -0.59 16 48 H 0.12 -0.09 8.06 -52.48 -0.42 -0.51 16 49 H 0.12 -0.25 7.43 -52.49 -0.39 -0.64 16 LS Contribution 410.72 15.07 6.19 6.19 Total: 0.00 -9.94 410.72 -11.92 -21.87 By element: Atomic # 1 Polarization: -4.77 SS G_CDS: -6.64 Total: -11.41 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -1.90 Total: 0.15 kcal Atomic # 7 Polarization: 0.54 SS G_CDS: -0.05 Total: 0.48 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: -2.55 Total: -13.04 kcal Atomic # 14 Polarization: -4.32 SS G_CDS: -6.42 Total: -10.75 kcal Atomic # 16 Polarization: 7.05 SS G_CDS: -0.54 Total: 6.51 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -9.94 -11.92 -21.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9630768_2726874.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.270 kcal (2) G-P(sol) polarization free energy of solvation -9.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds