Wall clock time and date at job start Mon Mar 8 2021 15:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86303 * 109.47121 * 2 1 4 4 C 1.86296 * 109.47232 * 239.99504 * 2 1 3 5 5 C 1.86805 * 109.46817 * 119.99418 * 2 1 3 6 6 C 1.38231 * 120.00144 * 89.99917 * 5 2 1 7 7 C 1.38232 * 120.00250 * 180.02562 * 6 5 2 8 8 C 1.38231 * 120.00143 * 0.02562 * 7 6 5 9 9 C 1.50693 * 120.00255 * 179.97438 * 8 7 6 10 10 N 1.46500 * 109.47584 * 89.99825 * 9 8 7 11 11 S 1.65597 * 120.00174 * 164.95859 * 10 9 8 12 12 O 1.42095 * 106.40552 * 309.91709 * 11 10 9 13 13 O 1.42105 * 106.40137 * 176.99899 * 11 10 9 14 14 C 1.76203 * 107.21829 * 63.46249 * 11 10 9 15 15 C 1.38210 * 119.99980 * 243.84951 * 14 11 10 16 16 C 1.38250 * 120.00017 * 180.22783 * 15 14 11 17 17 C 1.38215 * 120.00085 * 359.81280 * 16 15 14 18 18 C 1.38255 * 120.00187 * 359.97438 * 17 16 15 19 19 C 1.38217 * 119.99488 * 359.97438 * 18 17 16 20 20 C 1.50707 * 119.99786 * 180.02562 * 19 18 17 21 21 O 1.42900 * 109.47198 * 256.04218 * 20 19 18 22 22 Si 1.86303 * 109.46935 * 16.04188 * 20 19 18 23 23 H 1.48499 * 109.47151 * 299.99525 * 22 20 19 24 24 H 1.48504 * 109.46857 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47170 * 60.00357 * 22 20 19 26 26 C 1.38237 * 119.99751 * 0.25053 * 8 7 6 27 27 C 1.38238 * 120.00228 * 359.49706 * 26 8 7 28 28 H 1.09000 * 109.47406 * 300.01098 * 1 2 3 29 29 H 1.09007 * 109.46751 * 60.00443 * 1 2 3 30 30 H 1.08995 * 109.47278 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46781 * 179.97438 * 3 2 1 32 32 H 1.09009 * 109.46442 * 299.99342 * 3 2 1 33 33 H 1.08989 * 109.47479 * 59.99486 * 3 2 1 34 34 H 1.09002 * 109.47116 * 299.99809 * 4 2 1 35 35 H 1.08993 * 109.47340 * 60.00216 * 4 2 1 36 36 H 1.09006 * 109.46730 * 180.02562 * 4 2 1 37 37 H 1.08004 * 119.99792 * 0.02562 * 6 5 2 38 38 H 1.08000 * 119.99678 * 179.97438 * 7 6 5 39 39 H 1.08996 * 109.47205 * 329.99767 * 9 8 7 40 40 H 1.09005 * 109.47390 * 210.00226 * 9 8 7 41 41 H 0.97000 * 119.99485 * 344.96635 * 10 9 8 42 42 H 1.07999 * 120.00112 * 0.06094 * 15 14 11 43 43 H 1.08005 * 120.00369 * 179.83095 * 16 15 14 44 44 H 1.07999 * 120.00458 * 179.97438 * 17 16 15 45 45 H 1.07998 * 120.00302 * 180.02562 * 18 17 16 46 46 H 1.08998 * 109.46790 * 136.04064 * 20 19 18 47 47 H 0.96696 * 114.00103 * 174.99344 * 21 20 19 48 48 H 1.08006 * 119.99960 * 179.72562 * 26 8 7 49 49 H 1.07999 * 120.00231 * 180.22736 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8783 -1.5210 5 6 2.4856 -0.8805 1.5254 6 6 2.7159 -2.2430 1.4913 7 6 3.1761 -2.8947 2.6202 8 6 3.4055 -2.1839 3.7834 9 6 3.9066 -2.8943 5.0142 10 7 5.3716 -2.8945 5.0156 11 16 6.1983 -3.2648 6.4019 12 8 5.6406 -2.4573 7.4296 13 8 7.5782 -3.2479 6.0629 14 6 5.8072 -4.9331 6.8125 15 6 5.1329 -5.2164 7.9852 16 6 4.8303 -6.5257 8.3096 17 6 5.1986 -7.5512 7.4593 18 6 5.8693 -7.2676 6.2841 19 6 6.1709 -5.9585 5.9593 20 6 6.9015 -5.6492 4.6779 21 8 8.2664 -5.3426 4.9698 22 14 6.8253 -7.1279 3.5472 23 1 7.4631 -8.2926 4.2118 24 1 7.5457 -6.8233 2.2848 25 1 5.4070 -7.4464 3.2438 26 6 3.1697 -0.8222 3.8191 27 6 2.7145 -0.1696 2.6887 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 3.5740 1.7564 0.0005 32 1 2.1207 2.2702 -0.8902 33 1 2.1207 2.2703 0.8898 34 1 2.1207 -1.9060 -1.5209 35 1 2.1208 -0.3646 -2.4110 36 1 3.5741 -0.8787 -1.5207 37 1 2.5363 -2.7985 0.5827 38 1 3.3557 -3.9593 2.5936 39 1 3.5432 -3.9219 5.0139 40 1 3.5425 -2.3805 5.9039 41 1 5.8574 -2.6776 4.2045 42 1 4.8448 -4.4151 8.6494 43 1 4.3057 -6.7474 9.2273 44 1 4.9626 -8.5742 7.7129 45 1 6.1568 -8.0689 5.6195 46 1 6.4334 -4.7942 4.1901 47 1 8.8157 -5.2079 4.1855 48 1 3.3447 -0.2676 4.7292 49 1 2.5338 0.8948 2.7156 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_9630768_2726874.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 15:03:26 Heat of formation + Delta-G solvation = -85.496114 kcal Electronic energy + Delta-G solvation = -30569.657341 eV Core-core repulsion = 26519.342432 eV Total energy + Delta-G solvation = -4050.314909 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 379.123 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -40.64272 -40.13999 -38.49056 -37.47101 -36.95679 -36.37906 -32.98157 -32.42839 -31.80904 -31.79813 -29.39612 -28.28188 -28.25975 -27.01304 -26.45879 -24.44712 -23.40598 -22.71025 -22.10285 -20.68424 -19.12178 -18.62270 -18.51536 -17.85679 -17.23296 -16.94980 -16.53347 -16.24275 -16.01501 -15.85483 -15.59320 -15.21333 -15.12707 -14.49780 -14.41113 -14.28510 -14.16902 -14.05475 -13.97920 -13.89704 -13.69140 -13.55826 -13.50095 -13.28957 -13.23937 -13.11934 -13.10579 -13.07386 -13.03129 -12.95510 -12.45632 -12.20039 -12.09450 -11.98709 -11.88386 -11.65788 -10.90107 -10.77250 -10.74462 -10.66814 -10.49265 -10.28625 -10.07920 -9.74444 -9.61177 -0.75280 -0.30447 0.09429 0.31258 0.58207 1.01130 1.41422 1.45327 1.82096 1.87372 1.90656 2.04124 2.14767 2.35802 2.65496 2.68753 2.99676 3.25262 3.31017 3.67318 3.71917 3.84666 3.95210 3.96299 4.06363 4.18878 4.24673 4.34030 4.37274 4.39897 4.55596 4.60015 4.75005 4.77187 4.79218 4.85084 4.86059 4.89169 4.90105 4.91705 4.92133 4.98084 5.07754 5.14176 5.23491 5.25682 5.47601 5.60283 5.62856 5.68217 5.68638 5.72358 5.73496 5.94035 6.19110 6.79130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.464 4.464 2 Si 1.125 2.875 3 C -0.465 4.465 4 C -0.460 4.460 5 C -0.375 4.375 6 C -0.101 4.101 7 C -0.122 4.122 8 C -0.099 4.099 9 C 0.153 3.847 10 N -1.105 6.105 11 S 2.698 3.302 12 O -0.992 6.992 13 O -0.954 6.954 14 C -0.666 4.666 15 C -0.038 4.038 16 C -0.136 4.136 17 C -0.056 4.056 18 C -0.157 4.157 19 C 0.013 3.987 20 C -0.134 4.134 21 O -0.536 6.536 22 Si 0.982 3.018 23 H -0.257 1.257 24 H -0.246 1.246 25 H -0.241 1.241 26 C -0.129 4.129 27 C -0.103 4.103 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.427 0.573 42 H 0.148 0.852 43 H 0.161 0.839 44 H 0.165 0.835 45 H 0.145 0.855 46 H 0.088 0.912 47 H 0.394 0.606 48 H 0.122 0.878 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.702 -3.556 -5.146 7.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.312 2.688 3 C -0.572 4.572 4 C -0.567 4.567 5 C -0.416 4.416 6 C -0.119 4.119 7 C -0.141 4.141 8 C -0.101 4.101 9 C 0.029 3.971 10 N -0.868 5.868 11 S 2.790 3.210 12 O -0.982 6.982 13 O -0.944 6.944 14 C -0.754 4.754 15 C -0.057 4.057 16 C -0.154 4.154 17 C -0.074 4.074 18 C -0.175 4.175 19 C 0.011 3.989 20 C -0.243 4.243 21 O -0.344 6.344 22 Si 0.802 3.198 23 H -0.181 1.181 24 H -0.170 1.170 25 H -0.164 1.164 26 C -0.148 4.148 27 C -0.121 4.121 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.158 0.842 38 H 0.155 0.845 39 H 0.110 0.890 40 H 0.103 0.897 41 H 0.264 0.736 42 H 0.166 0.834 43 H 0.179 0.821 44 H 0.182 0.818 45 H 0.163 0.837 46 H 0.105 0.895 47 H 0.244 0.756 48 H 0.140 0.860 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.475 -3.833 -4.367 7.334 hybrid contribution 0.296 0.042 -0.143 0.332 sum -4.179 -3.790 -4.511 7.223 Atomic orbital electron populations 1.26302 1.21784 1.04477 1.04418 0.77173 0.65087 0.64465 0.62040 1.26323 1.06383 1.19812 1.04671 1.26253 1.06442 1.08527 1.15527 1.27911 1.02904 0.99913 1.10833 1.21405 0.97083 0.94913 0.98469 1.21418 0.99346 1.00696 0.92627 1.19793 1.01051 0.94147 0.95098 1.20351 0.77998 1.01543 0.97253 1.55467 1.15504 1.86226 1.29605 1.01565 0.72896 0.73775 0.72800 1.93537 1.80113 1.66886 1.57638 1.93662 1.30801 1.86890 1.83082 1.30619 1.15759 1.23472 1.05556 1.21279 0.91805 0.99222 0.93415 1.21722 1.00535 0.91917 1.01271 1.21862 0.92145 1.01413 0.91948 1.21539 1.00915 0.95675 0.99391 1.19099 0.92927 0.93291 0.93567 1.25376 0.86640 1.11926 1.00393 1.86667 1.17282 1.93529 1.36929 0.85234 0.82075 0.75645 0.76818 1.18102 1.16975 1.16433 1.21400 0.99669 0.94410 0.99324 1.21347 0.97400 1.00540 0.92816 0.91570 0.90849 0.91268 0.91368 0.90834 0.91162 0.90708 0.90845 0.91212 0.84223 0.84454 0.88973 0.89689 0.73580 0.83444 0.82107 0.81756 0.83737 0.89451 0.75607 0.86040 0.84972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.94 8.65 113.37 0.98 2.92 16 2 Si 1.13 -7.42 12.32 68.60 0.85 -6.57 16 3 C -0.47 2.01 8.53 113.37 0.97 2.98 16 4 C -0.46 2.59 8.53 113.37 0.97 3.55 16 5 C -0.38 0.89 4.59 22.27 0.10 1.00 16 6 C -0.10 0.26 9.29 22.27 0.21 0.47 16 7 C -0.12 0.27 9.70 22.27 0.22 0.48 16 8 C -0.10 0.04 5.28 -19.87 -0.10 -0.07 16 9 C 0.15 -0.21 6.33 85.63 0.54 0.33 16 10 N -1.10 -0.10 4.68 -190.80 -0.89 -0.99 16 11 S 2.70 18.74 4.98 -56.49 -0.28 18.46 16 12 O -0.99 -12.23 16.49 -128.00 -2.11 -14.34 16 13 O -0.95 -11.76 15.03 -119.18 -1.79 -13.55 16 14 C -0.67 -3.39 5.85 22.27 0.13 -3.26 16 15 C -0.04 -0.12 9.55 22.27 0.21 0.10 16 16 C -0.14 0.16 10.05 22.27 0.22 0.38 16 17 C -0.06 0.12 10.05 22.27 0.22 0.34 16 18 C -0.16 -0.10 8.66 22.27 0.19 0.09 16 19 C 0.01 0.04 5.28 -19.86 -0.10 -0.06 16 20 C -0.13 -0.09 1.87 71.24 0.13 0.04 16 21 O -0.54 -2.30 10.60 -127.49 -1.35 -3.65 16 22 Si 0.98 -2.85 25.45 68.60 1.75 -1.10 16 23 H -0.26 0.22 6.70 99.48 0.67 0.89 16 24 H -0.25 0.83 7.11 99.48 0.71 1.54 16 25 H -0.24 0.88 7.11 99.48 0.71 1.59 16 26 C -0.13 -0.14 9.70 22.27 0.22 0.07 16 27 C -0.10 0.04 9.29 22.27 0.21 0.25 16 28 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 29 H 0.07 -0.33 7.96 -2.38 -0.02 -0.35 16 30 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 31 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 32 H 0.07 -0.33 7.96 -2.38 -0.02 -0.35 16 33 H 0.07 -0.30 7.69 -2.39 -0.02 -0.32 16 34 H 0.07 -0.48 7.69 -2.39 -0.02 -0.50 16 35 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 36 H 0.07 -0.35 7.96 -2.38 -0.02 -0.36 16 37 H 0.14 -0.96 7.43 -2.91 -0.02 -0.98 16 38 H 0.14 -0.86 8.06 -2.91 -0.02 -0.88 16 39 H 0.09 -0.47 8.09 -2.39 -0.02 -0.49 16 40 H 0.08 -0.04 7.73 -2.38 -0.02 -0.06 16 41 H 0.43 -1.27 8.36 -96.74 -0.81 -2.08 16 42 H 0.15 0.28 7.34 -2.91 -0.02 0.26 16 43 H 0.16 -1.07 8.06 -2.91 -0.02 -1.10 16 44 H 0.16 -1.39 8.06 -2.91 -0.02 -1.41 16 45 H 0.15 -0.39 4.90 -2.91 -0.01 -0.40 16 46 H 0.09 -0.29 5.81 -2.39 -0.01 -0.30 16 47 H 0.39 -1.67 8.62 -74.06 -0.64 -2.30 16 48 H 0.12 0.05 8.06 -2.91 -0.02 0.02 16 49 H 0.13 -0.46 7.43 -2.91 -0.02 -0.48 16 Total: 0.00 -23.11 410.72 1.72 -21.39 By element: Atomic # 1 Polarization: -9.50 SS G_CDS: 0.24 Total: -9.26 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: 5.31 Total: 9.61 kcal Atomic # 7 Polarization: -0.10 SS G_CDS: -0.89 Total: -0.99 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -5.25 Total: -31.54 kcal Atomic # 14 Polarization: -10.26 SS G_CDS: 2.59 Total: -7.67 kcal Atomic # 16 Polarization: 18.74 SS G_CDS: -0.28 Total: 18.46 kcal Total: -23.11 1.72 -21.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9630768_2726874.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.104 kcal (2) G-P(sol) polarization free energy of solvation -23.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds