Wall clock time and date at job start Mon Mar 8 2021 11:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38212 * 119.99620 * 2 1 4 4 C 1.38263 * 119.99536 * 180.22556 * 3 2 1 5 5 C 1.50703 * 119.99789 * 179.80760 * 4 3 2 6 6 H 1.08996 * 112.85265 * 348.53546 * 5 4 3 7 7 C 1.53782 * 113.61037 * 119.72898 * 5 4 3 8 8 C 1.53786 * 87.08040 * 139.98008 * 7 5 4 9 9 H 1.09004 * 113.61119 * 219.93172 * 8 7 5 10 10 N 1.46498 * 113.61412 * 89.11291 * 8 7 5 11 11 S 1.65606 * 119.99909 * 144.99947 * 10 8 7 12 12 O 1.42098 * 106.40146 * 311.46242 * 11 10 8 13 13 O 1.42102 * 106.40092 * 178.54297 * 11 10 8 14 14 C 1.76196 * 107.21551 * 65.00019 * 11 10 8 15 15 C 1.38241 * 119.99804 * 90.00248 * 14 11 10 16 16 C 1.38232 * 120.00100 * 179.97438 * 15 14 11 17 17 C 1.38234 * 119.99651 * 359.97438 * 16 15 14 18 18 C 1.50707 * 119.99907 * 179.97438 * 17 16 15 19 19 O 1.42903 * 109.46442 * 65.00146 * 18 17 16 20 20 Si 1.86293 * 109.47256 * 184.99713 * 18 17 16 21 21 C 1.38236 * 120.00404 * 0.25260 * 17 16 15 22 22 C 1.38236 * 120.00083 * 269.97594 * 14 11 10 23 23 C 1.53781 * 87.08076 * 334.56469 * 8 7 5 24 24 C 1.38212 * 119.99946 * 359.53515 * 4 3 2 25 25 C 1.38254 * 120.00216 * 0.27876 * 24 4 3 26 26 C 1.38218 * 119.99974 * 359.97399 * 25 24 4 27 27 H 1.08996 * 109.47703 * 270.17030 * 1 2 3 28 28 H 1.08998 * 109.46870 * 30.17147 * 1 2 3 29 29 H 1.08997 * 109.46981 * 150.16634 * 1 2 3 30 30 H 1.07992 * 120.00513 * 0.03705 * 3 2 1 31 31 H 1.09001 * 113.61714 * 25.43491 * 7 5 4 32 32 H 1.09004 * 113.61583 * 254.52678 * 7 5 4 33 33 H 0.97002 * 119.99992 * 325.00549 * 10 8 7 34 34 H 1.08003 * 119.99885 * 359.97245 * 15 14 11 35 35 H 1.08000 * 120.00067 * 179.97438 * 16 15 14 36 36 H 1.08999 * 109.47345 * 305.00217 * 18 17 16 37 37 H 0.96700 * 114.00311 * 60.00230 * 19 18 17 38 38 H 1.48501 * 109.99918 * 58.68485 * 20 18 17 39 39 H 1.48506 * 109.99973 * 180.02562 * 20 18 17 40 40 H 1.07997 * 119.99933 * 179.72390 * 21 17 16 41 41 H 1.08000 * 120.00146 * 0.02562 * 22 14 11 42 42 H 1.08996 * 113.61565 * 139.97668 * 23 8 7 43 43 H 1.08999 * 113.61655 * 270.88741 * 23 8 7 44 44 H 1.07998 * 119.99825 * 180.25159 * 24 4 3 45 45 H 1.07991 * 120.00340 * 179.97438 * 25 24 4 46 46 H 1.07994 * 120.00224 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1970 0.0000 4 6 3.5806 1.1970 -0.0047 5 6 4.3341 2.5021 -0.0091 6 1 3.6926 3.3606 -0.2077 7 6 5.2514 2.6879 1.2112 8 6 6.2809 3.2985 0.2456 9 1 7.3076 2.9986 0.4553 10 7 6.1352 4.7457 0.0710 11 16 7.4767 5.6931 -0.1424 12 8 8.3970 5.3202 0.8740 13 8 7.0056 7.0227 -0.3146 14 6 8.2094 5.2224 -1.6741 15 6 7.8303 5.8532 -2.8443 16 6 8.4055 5.4843 -4.0459 17 6 9.3600 4.4849 -4.0773 18 6 9.9867 4.0823 -5.3874 19 8 10.7450 5.1757 -5.9085 20 14 11.1101 2.6213 -5.1154 21 6 9.7357 3.8509 -2.9077 22 6 9.1636 4.2227 -1.7055 23 6 5.6109 2.4734 -0.8658 24 6 4.2717 0.0000 0.0003 25 6 3.5805 -1.1973 0.0042 26 6 2.1983 -1.1973 0.0036 27 1 -0.3634 0.0031 1.0276 28 1 -0.3633 0.8884 -0.5165 29 1 -0.3633 -0.8915 -0.5112 30 1 1.6581 2.1322 0.0006 31 1 5.5767 1.7493 1.6598 32 1 4.8655 3.3970 1.9436 33 1 5.2531 5.1491 0.0803 34 1 7.0848 6.6343 -2.8197 35 1 8.1091 5.9769 -4.9602 36 1 9.2043 3.8121 -6.0966 37 1 11.4606 5.4700 -5.3284 38 1 10.3397 1.4877 -4.5437 39 1 11.7348 2.2149 -6.3999 40 1 10.4782 3.0671 -2.9329 41 1 9.4597 3.7298 -0.7913 42 1 5.5151 3.0093 -1.8101 43 1 6.0344 1.4761 -0.9849 44 1 5.3517 0.0001 0.0007 45 1 4.1204 -2.1325 0.0077 46 1 1.6583 -2.1326 0.0062 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_9650862_13421422.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:52:31 Heat of formation + Delta-G solvation = -27.604648 kcal Electronic energy + Delta-G solvation = -29464.620219 eV Core-core repulsion = 25413.258634 eV Total energy + Delta-G solvation = -4051.361585 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 360.123 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -41.33660 -40.76755 -39.43660 -38.25204 -37.80336 -36.88773 -34.66473 -33.24292 -33.08605 -32.29130 -31.67141 -27.85862 -27.32515 -26.79343 -26.15227 -24.18376 -23.11813 -23.05665 -22.28996 -20.89649 -20.02276 -19.28930 -18.73224 -18.21081 -17.65258 -17.33650 -16.87017 -16.65873 -16.42236 -16.12308 -16.09281 -15.88811 -15.54657 -15.19611 -14.90031 -14.87405 -14.68194 -14.51311 -14.26920 -14.10119 -14.00985 -13.85614 -13.62492 -13.40181 -13.14986 -13.13651 -13.06051 -12.97824 -12.71246 -12.52643 -12.45920 -12.23732 -12.04772 -11.95089 -11.78600 -11.71890 -11.26975 -10.70609 -10.66629 -10.41582 -10.23146 -9.70253 -9.47803 -5.17982 -0.75986 -0.41013 0.10539 0.39766 0.46455 1.09687 1.48224 1.80275 1.83483 2.26474 2.70506 2.75966 3.18399 3.24406 3.33326 3.39215 3.48901 3.54699 3.65972 3.70123 3.80647 3.91601 3.97805 4.00800 4.05772 4.07055 4.18870 4.23763 4.28590 4.40927 4.46887 4.50094 4.55875 4.62100 4.67284 4.68193 4.72436 4.82112 4.84418 4.86163 4.89188 4.90101 4.93694 5.13196 5.15852 5.22122 5.26815 5.55316 5.60616 5.65738 5.69960 5.80823 6.08898 6.37253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.083 4.083 3 C -0.117 4.117 4 C -0.067 4.067 5 C -0.073 4.073 6 H 0.098 0.902 7 C -0.132 4.132 8 C 0.123 3.877 9 H 0.108 0.892 10 N -1.097 6.097 11 S 2.696 3.304 12 O -0.950 6.950 13 O -0.954 6.954 14 C -0.673 4.673 15 C -0.016 4.016 16 C -0.114 4.114 17 C -0.063 4.063 18 C -0.078 4.078 19 O -0.535 6.535 20 Si 0.688 3.312 21 C -0.137 4.137 22 C -0.014 4.014 23 C -0.149 4.149 24 C -0.124 4.124 25 C -0.113 4.113 26 C -0.125 4.125 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.120 0.880 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.420 0.580 34 H 0.143 0.857 35 H 0.136 0.864 36 H 0.119 0.881 37 H 0.381 0.619 38 H -0.254 1.254 39 H -0.251 1.251 40 H 0.137 0.863 41 H 0.145 0.855 42 H 0.077 0.923 43 H 0.097 0.903 44 H 0.122 0.878 45 H 0.122 0.878 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.335 -3.475 -0.281 3.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.083 4.083 3 C -0.136 4.136 4 C -0.067 4.067 5 C -0.091 4.091 6 H 0.117 0.883 7 C -0.171 4.171 8 C 0.015 3.985 9 H 0.126 0.874 10 N -0.856 5.856 11 S 2.785 3.215 12 O -0.940 6.940 13 O -0.944 6.944 14 C -0.760 4.760 15 C -0.035 4.035 16 C -0.132 4.132 17 C -0.064 4.064 18 C -0.188 4.188 19 O -0.341 6.341 20 Si 0.590 3.410 21 C -0.155 4.155 22 C -0.034 4.034 23 C -0.188 4.188 24 C -0.142 4.142 25 C -0.131 4.131 26 C -0.143 4.143 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.138 0.862 31 H 0.117 0.883 32 H 0.100 0.900 33 H 0.256 0.744 34 H 0.161 0.839 35 H 0.154 0.846 36 H 0.136 0.864 37 H 0.229 0.771 38 H -0.179 1.179 39 H -0.176 1.176 40 H 0.154 0.846 41 H 0.163 0.837 42 H 0.096 0.904 43 H 0.116 0.884 44 H 0.140 0.860 45 H 0.140 0.860 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.092 -3.810 -0.415 3.834 hybrid contribution -0.998 -0.049 -0.900 1.345 sum -1.090 -3.859 -1.315 4.220 Atomic orbital electron populations 1.20821 0.91122 1.02920 1.02514 1.19956 0.96172 0.93166 0.99031 1.20945 0.93555 0.97602 1.01448 1.19657 0.93397 0.94348 0.99347 1.21549 0.94984 0.95279 0.97316 0.88347 1.23406 0.95457 1.01911 0.96340 1.21700 1.00575 0.78898 0.97367 0.87382 1.55356 1.24315 1.16974 1.88905 1.01918 0.72945 0.72749 0.73874 1.93617 1.62567 1.83556 1.54275 1.93625 1.80470 1.33573 1.86731 1.30985 1.13642 1.10429 1.20908 1.20995 0.96134 0.95456 0.90949 1.21188 0.96346 0.97191 0.98522 1.20745 0.95179 0.94954 0.95478 1.25227 1.00067 0.99429 0.94102 1.86539 1.48580 1.51248 1.47707 0.94663 0.85321 0.76485 0.84579 1.21134 1.01207 1.00863 0.92322 1.20900 0.91440 0.92263 0.98766 1.23633 0.95881 1.01151 0.98105 1.20972 0.99830 0.91925 1.01457 1.21146 0.94330 0.98060 0.99589 1.21074 0.94368 0.97602 1.01284 0.91014 0.91481 0.91447 0.86192 0.88285 0.90046 0.74448 0.83932 0.84579 0.86384 0.77102 1.17908 1.17559 0.84572 0.83729 0.90396 0.88427 0.86021 0.86017 0.86146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.11 10.01 36.01 0.36 0.47 16 2 C -0.08 -0.06 5.88 -104.62 -0.62 -0.67 16 3 C -0.12 -0.05 9.37 -39.58 -0.37 -0.42 16 4 C -0.07 0.01 5.29 -104.62 -0.55 -0.54 16 5 C -0.07 0.15 3.80 -90.95 -0.35 -0.20 16 6 H 0.10 -0.26 8.06 -51.93 -0.42 -0.68 16 7 C -0.13 0.31 7.33 -25.92 -0.19 0.12 16 8 C 0.12 -0.31 4.51 -67.12 -0.30 -0.61 16 9 H 0.11 -0.35 7.77 -51.93 -0.40 -0.75 16 10 N -1.10 2.26 5.73 -4.20 -0.02 2.24 16 11 S 2.70 1.65 5.71 -107.50 -0.61 1.04 16 12 O -0.95 -3.12 16.80 -57.17 -0.96 -4.08 16 13 O -0.95 -3.42 17.28 -57.17 -0.99 -4.41 16 14 C -0.67 0.11 5.95 -39.58 -0.24 -0.13 16 15 C -0.02 0.00 9.52 -39.58 -0.38 -0.37 16 16 C -0.11 0.04 9.69 -39.58 -0.38 -0.34 16 17 C -0.06 0.06 5.35 -104.62 -0.56 -0.50 16 18 C -0.08 0.10 2.80 36.01 0.10 0.21 16 19 O -0.54 0.35 12.83 -35.23 -0.45 -0.10 16 20 Si 0.69 -1.45 29.80 -169.99 -5.07 -6.52 16 21 C -0.14 0.22 8.67 -39.58 -0.34 -0.13 16 22 C -0.01 0.01 9.52 -39.58 -0.38 -0.36 16 23 C -0.15 0.39 7.25 -25.92 -0.19 0.20 16 24 C -0.12 0.03 8.61 -39.58 -0.34 -0.31 16 25 C -0.11 -0.02 10.05 -39.58 -0.40 -0.42 16 26 C -0.13 -0.08 9.70 -39.58 -0.38 -0.46 16 27 H 0.07 -0.09 8.14 -51.93 -0.42 -0.52 16 28 H 0.07 -0.09 8.09 -51.93 -0.42 -0.51 16 29 H 0.07 -0.09 8.09 -51.93 -0.42 -0.51 16 30 H 0.12 -0.10 8.05 -52.49 -0.42 -0.52 16 31 H 0.10 -0.26 7.72 -51.93 -0.40 -0.66 16 32 H 0.08 -0.18 8.14 -51.93 -0.42 -0.61 16 33 H 0.42 -1.50 8.78 -34.48 -0.30 -1.80 16 34 H 0.14 -0.17 7.62 -52.48 -0.40 -0.57 16 35 H 0.14 -0.16 8.06 -52.49 -0.42 -0.58 16 36 H 0.12 -0.14 7.96 -51.93 -0.41 -0.55 16 37 H 0.38 -1.68 8.70 45.56 0.40 -1.28 16 38 H -0.25 0.02 7.11 56.52 0.40 0.42 16 39 H -0.25 -0.32 7.11 56.52 0.40 0.08 16 40 H 0.14 -0.52 4.91 -52.49 -0.26 -0.78 16 41 H 0.15 -0.38 7.62 -52.49 -0.40 -0.78 16 42 H 0.08 -0.19 8.14 -51.93 -0.42 -0.61 16 43 H 0.10 -0.30 6.31 -51.93 -0.33 -0.63 16 44 H 0.12 -0.25 6.66 -52.49 -0.35 -0.60 16 45 H 0.12 -0.17 8.06 -52.49 -0.42 -0.59 16 46 H 0.12 -0.09 8.06 -52.49 -0.42 -0.51 16 LS Contribution 390.60 15.07 5.89 5.89 Total: 0.00 -9.97 390.60 -13.99 -23.97 By element: Atomic # 1 Polarization: -7.26 SS G_CDS: -6.27 Total: -13.53 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -5.50 Total: -4.48 kcal Atomic # 7 Polarization: 2.26 SS G_CDS: -0.02 Total: 2.24 kcal Atomic # 8 Polarization: -6.19 SS G_CDS: -2.40 Total: -8.59 kcal Atomic # 14 Polarization: -1.45 SS G_CDS: -5.07 Total: -6.52 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -0.61 Total: 1.04 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -9.97 -13.99 -23.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9650862_13421422.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.636 kcal (2) G-P(sol) polarization free energy of solvation -9.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds