Wall clock time and date at job start Mon Mar 8 2021 11:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86300 * 109.47256 * 2 1 4 4 C 1.50701 * 109.47081 * 120.00065 * 2 1 3 5 5 C 1.33386 * 122.54261 * 74.99852 * 4 2 1 6 6 S 1.76198 * 125.20232 * 359.95877 * 5 4 2 7 7 O 1.42102 * 106.40151 * 336.45958 * 6 5 4 8 8 O 1.42101 * 106.40021 * 203.54512 * 6 5 4 9 9 N 1.65592 * 107.21913 * 89.99846 * 6 5 4 10 10 C 1.46505 * 119.99830 * 65.00019 * 9 6 5 11 11 H 1.08998 * 112.84922 * 346.20014 * 10 9 6 12 12 C 1.53778 * 113.68839 * 117.46300 * 10 9 6 13 13 C 1.53781 * 87.08213 * 89.12900 * 12 10 9 14 14 H 1.08996 * 113.68859 * 270.87210 * 13 12 10 15 15 C 1.50699 * 113.61582 * 139.97961 * 13 12 10 16 16 C 1.38225 * 119.96738 * 142.50340 * 15 13 12 17 17 C 1.38237 * 120.04073 * 179.97438 * 16 15 13 18 18 C 1.38410 * 119.98351 * 359.97438 * 17 16 15 19 19 F 1.35104 * 120.02535 * 179.97438 * 18 17 16 20 20 C 1.38564 * 119.94489 * 0.02562 * 18 17 16 21 21 Br 1.89098 * 120.02352 * 180.02562 * 20 18 17 22 22 C 1.38250 * 119.97216 * 322.48109 * 15 13 12 23 23 C 1.53773 * 113.61453 * 214.99837 * 10 9 6 24 24 S 1.75881 * 109.59500 * 180.22508 * 5 4 2 25 25 C 1.75888 * 90.96984 * 359.68481 * 24 5 4 26 26 C 1.33388 * 109.59465 * 0.31340 * 25 24 5 27 27 H 0.96701 * 114.00170 * 300.00041 * 1 2 3 28 28 H 1.09004 * 109.47649 * 239.99691 * 2 1 3 29 29 H 1.48499 * 109.99960 * 299.99662 * 3 2 1 30 30 H 1.48493 * 110.00107 * 61.31852 * 3 2 1 31 31 H 0.97000 * 120.00296 * 244.99826 * 9 6 5 32 32 H 1.08999 * 113.61879 * 334.58176 * 12 10 9 33 33 H 1.09004 * 113.61570 * 203.67530 * 12 10 9 34 34 H 1.07998 * 119.98251 * 359.70363 * 16 15 13 35 35 H 1.08002 * 120.00851 * 179.97438 * 17 16 15 36 36 H 1.08000 * 119.99204 * 0.02562 * 22 15 13 37 37 H 1.09004 * 113.61622 * 156.25422 * 23 10 9 38 38 H 1.09002 * 113.61660 * 25.34859 * 23 10 9 39 39 H 1.08003 * 125.20443 * 180.02562 * 25 24 5 40 40 H 1.07991 * 122.54165 * 179.77815 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.8961 -2.0378 1.3573 6 16 1.2747 -3.1576 0.1471 7 8 0.3671 -2.4165 -0.6568 8 8 0.9080 -4.3398 0.8451 9 7 2.5418 -3.5691 -0.8364 10 6 3.6763 -4.3205 -0.2936 11 1 3.6881 -4.3408 0.7961 12 6 3.8659 -5.7041 -0.9375 13 6 4.7569 -5.0094 -1.9808 14 1 4.2093 -4.6394 -2.8476 15 6 5.9793 -5.8063 -2.3574 16 6 6.4280 -5.8060 -3.6648 17 6 7.5494 -6.5360 -4.0117 18 6 8.2238 -7.2673 -3.0493 19 9 9.3196 -7.9815 -3.3876 20 6 7.7734 -7.2672 -1.7389 21 35 8.6934 -8.2649 -0.4222 22 6 6.6512 -6.5366 -1.3948 23 6 5.0273 -3.9322 -0.9171 24 16 2.5577 -2.4988 2.9203 25 6 2.8625 -0.8137 3.3218 26 6 2.4647 -0.0348 2.3146 27 1 -0.3933 0.4417 0.7650 28 1 1.7924 -0.5139 -0.8900 29 1 1.5616 2.4678 -1.2085 30 1 1.5879 2.4585 1.2242 31 1 2.5329 -3.3127 -1.7719 32 1 2.9492 -6.1210 -1.3545 33 1 4.4038 -6.4102 -0.3048 34 1 5.8996 -5.2386 -4.4166 35 1 7.8993 -6.5357 -5.0335 36 1 6.2996 -6.5361 -0.3736 37 1 5.8827 -4.1539 -0.2789 38 1 5.0481 -2.9186 -1.3177 39 1 3.3002 -0.4628 4.2447 40 1 2.5524 1.0411 2.3427 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_9650944_13652106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:53:02 Heat of formation + Delta-G solvation = -42.267483 kcal Electronic energy + Delta-G solvation = -30780.408389 eV Core-core repulsion = 26163.828863 eV Total energy + Delta-G solvation = -4616.579526 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 447.965 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -49.99346 -41.48328 -40.15772 -39.36343 -38.08365 -37.10985 -36.78605 -34.47379 -33.54901 -31.52297 -31.43754 -30.41451 -28.03814 -26.90812 -26.23005 -24.40714 -24.19520 -22.86716 -21.63895 -20.83768 -19.96078 -19.58859 -18.92374 -18.56231 -18.32127 -17.73801 -17.20890 -16.91964 -16.77895 -16.58985 -16.30924 -15.95170 -15.81551 -15.66776 -15.31643 -15.23920 -14.78675 -14.64143 -14.32085 -14.28269 -14.15564 -14.12208 -13.81044 -13.55081 -13.51010 -13.09626 -13.01107 -12.99865 -12.72992 -12.52788 -12.48677 -12.30385 -12.20964 -12.06064 -11.73038 -11.60164 -11.50378 -11.33322 -10.74133 -10.66269 -10.49737 -10.08968 -9.73746 -9.64919 -5.09287 -0.87374 -0.57301 -0.23874 -0.08997 0.23309 0.44545 0.56982 1.11443 1.13261 1.47131 1.87153 1.90845 2.20241 2.66656 2.98528 3.18136 3.33423 3.33833 3.38840 3.43189 3.49518 3.51317 3.69236 3.85266 3.88126 3.90004 3.91027 4.02727 4.08095 4.29257 4.30575 4.47259 4.52499 4.58215 4.67848 4.70849 4.74219 4.76892 4.77210 4.88738 4.91388 4.96474 5.16197 5.29139 5.53531 5.77512 6.41129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.492 6.492 2 C -0.075 4.075 3 Si 0.691 3.309 4 C 0.009 3.991 5 C -0.776 4.776 6 S 2.708 3.292 7 O -0.920 6.920 8 O -0.948 6.948 9 N -1.096 6.096 10 C 0.125 3.875 11 H 0.102 0.898 12 C -0.145 4.145 13 C -0.073 4.073 14 H 0.106 0.894 15 C -0.076 4.076 16 C -0.070 4.070 17 C -0.144 4.144 18 C 0.123 3.877 19 F -0.124 7.124 20 C -0.128 4.128 21 Br -0.027 7.027 22 C -0.062 4.062 23 C -0.136 4.136 24 S 0.224 5.776 25 C -0.162 4.162 26 C -0.169 4.169 27 H 0.369 0.631 28 H 0.121 0.879 29 H -0.250 1.250 30 H -0.256 1.256 31 H 0.421 0.579 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.141 0.859 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.178 0.822 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.003 4.137 0.833 5.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.296 6.296 2 C -0.187 4.187 3 Si 0.591 3.409 4 C -0.009 4.009 5 C -0.976 4.976 6 S 2.792 3.208 7 O -0.909 6.909 8 O -0.938 6.938 9 N -0.855 5.855 10 C 0.017 3.983 11 H 0.120 0.880 12 C -0.185 4.185 13 C -0.091 4.091 14 H 0.124 0.876 15 C -0.077 4.077 16 C -0.089 4.089 17 C -0.163 4.163 18 C 0.101 3.899 19 F -0.102 7.102 20 C -0.209 4.209 21 Br 0.059 6.941 22 C -0.082 4.082 23 C -0.175 4.175 24 S 0.491 5.509 25 C -0.300 4.300 26 C -0.198 4.198 27 H 0.215 0.785 28 H 0.139 0.861 29 H -0.175 1.175 30 H -0.181 1.181 31 H 0.256 0.744 32 H 0.103 0.897 33 H 0.117 0.883 34 H 0.158 0.842 35 H 0.164 0.836 36 H 0.162 0.838 37 H 0.118 0.882 38 H 0.103 0.897 39 H 0.196 0.804 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 3.659 2.509 1.712 4.755 hybrid contribution -0.614 1.742 -0.443 1.899 sum 3.044 4.250 1.269 5.380 Atomic orbital electron populations 1.86929 1.15457 1.79142 1.48119 1.25067 0.85731 1.11253 0.96670 0.95199 0.91121 0.73780 0.80811 1.19166 0.93493 0.91440 0.96843 1.35818 1.27544 1.14209 1.20069 1.01819 0.72463 0.73304 0.73175 1.93740 1.58154 1.72175 1.66878 1.93635 1.80188 1.45405 1.74582 1.55467 1.37272 1.69515 1.23291 1.21630 0.86152 0.92533 0.97994 0.88030 1.23613 1.00692 0.96478 0.97689 1.21597 0.93332 0.96037 0.98176 0.87552 1.19753 0.96970 0.97918 0.93027 1.21101 0.94785 0.96912 0.96080 1.21209 0.96932 0.98463 0.99737 1.17439 0.85848 0.94476 0.92111 1.91581 1.50461 1.75552 1.92624 1.21978 1.00899 1.05189 0.92833 1.96832 1.75632 1.70923 1.50712 1.20893 0.92293 0.94290 1.00681 1.23494 0.96910 0.99635 0.97500 1.84361 1.54639 1.05210 1.06642 1.26233 1.03126 0.97229 1.03443 1.20347 1.03830 1.02049 0.93618 0.78456 0.86097 1.17463 1.18092 0.74362 0.89666 0.88264 0.84169 0.83641 0.83835 0.88231 0.89655 0.80433 0.82810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.49 -0.99 11.12 -56.67 -0.63 -1.62 16 2 C -0.08 0.03 1.79 36.01 0.06 0.09 16 3 Si 0.69 -1.39 30.46 -169.99 -5.18 -6.56 16 4 C 0.01 -0.01 5.13 -106.25 -0.55 -0.55 16 5 C -0.78 -0.08 6.54 29.04 0.19 0.11 16 6 S 2.71 3.38 5.61 -107.50 -0.60 2.78 16 7 O -0.92 -3.63 14.29 -66.03 -0.94 -4.57 16 8 O -0.95 -4.11 17.67 -57.17 -1.01 -5.12 16 9 N -1.10 2.78 5.73 -4.20 -0.02 2.75 16 10 C 0.13 -0.41 4.43 -67.12 -0.30 -0.71 16 11 H 0.10 -0.36 8.05 -51.93 -0.42 -0.78 16 12 C -0.15 0.45 7.25 -25.92 -0.19 0.27 16 13 C -0.07 0.30 3.81 -90.96 -0.35 -0.05 16 14 H 0.11 -0.55 8.07 -51.93 -0.42 -0.97 16 15 C -0.08 0.19 5.29 -104.62 -0.55 -0.36 16 16 C -0.07 0.18 9.71 -39.59 -0.38 -0.20 16 17 C -0.14 0.17 10.03 -39.52 -0.40 -0.23 16 18 C 0.12 0.12 7.27 -39.40 -0.29 -0.17 16 19 F -0.12 -0.32 16.73 2.25 0.04 -0.29 16 20 C -0.13 -0.07 6.23 -39.45 -0.25 -0.31 16 21 Br -0.03 -0.03 33.29 -68.01 -2.26 -2.30 16 22 C -0.06 0.09 8.35 -39.57 -0.33 -0.24 16 23 C -0.14 0.64 7.33 -25.92 -0.19 0.45 16 24 S 0.22 -0.24 23.21 -107.50 -2.50 -2.74 16 25 C -0.16 0.42 11.23 29.04 0.33 0.75 16 26 C -0.17 0.35 8.74 -41.21 -0.36 -0.01 16 27 H 0.37 -0.48 8.70 45.56 0.40 -0.08 16 28 H 0.12 -0.16 7.17 -51.93 -0.37 -0.53 16 29 H -0.25 -0.34 7.11 56.52 0.40 0.06 16 30 H -0.26 0.15 6.80 56.52 0.38 0.54 16 31 H 0.42 -1.93 8.80 -34.47 -0.30 -2.23 16 32 H 0.08 -0.19 8.14 -51.93 -0.42 -0.62 16 33 H 0.10 -0.37 6.31 -51.93 -0.33 -0.69 16 34 H 0.14 -0.68 8.05 -52.49 -0.42 -1.10 16 35 H 0.15 -0.40 8.06 -52.49 -0.42 -0.82 16 36 H 0.14 -0.44 6.66 -52.49 -0.35 -0.79 16 37 H 0.10 -0.50 7.72 -51.93 -0.40 -0.90 16 38 H 0.08 -0.46 8.14 -51.93 -0.42 -0.88 16 39 H 0.18 -0.92 8.06 -52.48 -0.42 -1.34 16 40 H 0.15 -0.56 5.53 -52.49 -0.29 -0.85 16 LS Contribution 382.58 15.07 5.77 5.77 Total: 0.00 -10.34 382.58 -14.70 -25.04 By element: Atomic # 1 Polarization: -8.17 SS G_CDS: -3.81 Total: -11.98 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -3.54 Total: -1.16 kcal Atomic # 7 Polarization: 2.78 SS G_CDS: -0.02 Total: 2.75 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: -2.58 Total: -11.31 kcal Atomic # 9 Polarization: -0.32 SS G_CDS: 0.04 Total: -0.29 kcal Atomic # 14 Polarization: -1.39 SS G_CDS: -5.18 Total: -6.56 kcal Atomic # 16 Polarization: 3.14 SS G_CDS: -3.10 Total: 0.04 kcal Atomic # 35 Polarization: -0.03 SS G_CDS: -2.26 Total: -2.30 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -10.34 -14.70 -25.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9650944_13652106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.227 kcal (2) G-P(sol) polarization free energy of solvation -10.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds