Wall clock time and date at job start Mon Mar 8 2021 11:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86300 * 109.47256 * 2 1 4 4 C 1.50701 * 109.47081 * 120.00065 * 2 1 3 5 5 C 1.33386 * 122.54261 * 74.99852 * 4 2 1 6 6 S 1.76198 * 125.20232 * 359.95877 * 5 4 2 7 7 O 1.42102 * 106.40151 * 336.45958 * 6 5 4 8 8 O 1.42101 * 106.40021 * 203.54512 * 6 5 4 9 9 N 1.65592 * 107.21913 * 89.99846 * 6 5 4 10 10 C 1.46505 * 119.99830 * 65.00019 * 9 6 5 11 11 H 1.08998 * 112.84922 * 346.20014 * 10 9 6 12 12 C 1.53778 * 113.68839 * 117.46300 * 10 9 6 13 13 C 1.53781 * 87.08213 * 89.12900 * 12 10 9 14 14 H 1.08996 * 113.68859 * 270.87210 * 13 12 10 15 15 C 1.50699 * 113.61582 * 139.97961 * 13 12 10 16 16 C 1.38225 * 119.96738 * 142.50340 * 15 13 12 17 17 C 1.38237 * 120.04073 * 179.97438 * 16 15 13 18 18 C 1.38410 * 119.98351 * 359.97438 * 17 16 15 19 19 F 1.35104 * 120.02535 * 179.97438 * 18 17 16 20 20 C 1.38564 * 119.94489 * 0.02562 * 18 17 16 21 21 Br 1.89098 * 120.02352 * 180.02562 * 20 18 17 22 22 C 1.38250 * 119.97216 * 322.48109 * 15 13 12 23 23 C 1.53773 * 113.61453 * 214.99837 * 10 9 6 24 24 S 1.75881 * 109.59500 * 180.22508 * 5 4 2 25 25 C 1.75888 * 90.96984 * 359.68481 * 24 5 4 26 26 C 1.33388 * 109.59465 * 0.31340 * 25 24 5 27 27 H 0.96701 * 114.00170 * 300.00041 * 1 2 3 28 28 H 1.09004 * 109.47649 * 239.99691 * 2 1 3 29 29 H 1.48499 * 109.99960 * 299.99662 * 3 2 1 30 30 H 1.48493 * 110.00107 * 61.31852 * 3 2 1 31 31 H 0.97000 * 120.00296 * 244.99826 * 9 6 5 32 32 H 1.08999 * 113.61879 * 334.58176 * 12 10 9 33 33 H 1.09004 * 113.61570 * 203.67530 * 12 10 9 34 34 H 1.07998 * 119.98251 * 359.70363 * 16 15 13 35 35 H 1.08002 * 120.00851 * 179.97438 * 17 16 15 36 36 H 1.08000 * 119.99204 * 0.02562 * 22 15 13 37 37 H 1.09004 * 113.61622 * 156.25422 * 23 10 9 38 38 H 1.09002 * 113.61660 * 25.34859 * 23 10 9 39 39 H 1.08003 * 125.20443 * 180.02562 * 25 24 5 40 40 H 1.07991 * 122.54165 * 179.77815 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.8961 -2.0378 1.3573 6 16 1.2747 -3.1576 0.1471 7 8 0.3671 -2.4165 -0.6568 8 8 0.9080 -4.3398 0.8451 9 7 2.5418 -3.5691 -0.8364 10 6 3.6763 -4.3205 -0.2936 11 1 3.6881 -4.3408 0.7961 12 6 3.8659 -5.7041 -0.9375 13 6 4.7569 -5.0094 -1.9808 14 1 4.2093 -4.6394 -2.8476 15 6 5.9793 -5.8063 -2.3574 16 6 6.4280 -5.8060 -3.6648 17 6 7.5494 -6.5360 -4.0117 18 6 8.2238 -7.2673 -3.0493 19 9 9.3196 -7.9815 -3.3876 20 6 7.7734 -7.2672 -1.7389 21 35 8.6934 -8.2649 -0.4222 22 6 6.6512 -6.5366 -1.3948 23 6 5.0273 -3.9322 -0.9171 24 16 2.5577 -2.4988 2.9203 25 6 2.8625 -0.8137 3.3218 26 6 2.4647 -0.0348 2.3146 27 1 -0.3933 0.4417 0.7650 28 1 1.7924 -0.5139 -0.8900 29 1 1.5616 2.4678 -1.2085 30 1 1.5879 2.4585 1.2242 31 1 2.5329 -3.3127 -1.7719 32 1 2.9492 -6.1210 -1.3545 33 1 4.4038 -6.4102 -0.3048 34 1 5.8996 -5.2386 -4.4166 35 1 7.8993 -6.5357 -5.0335 36 1 6.2996 -6.5361 -0.3736 37 1 5.8827 -4.1539 -0.2789 38 1 5.0481 -2.9186 -1.3177 39 1 3.3002 -0.4628 4.2447 40 1 2.5524 1.0411 2.3427 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_9650944_13652106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:53:01 Heat of formation + Delta-G solvation = -42.053524 kcal Electronic energy + Delta-G solvation = -30780.399111 eV Core-core repulsion = 26163.828863 eV Total energy + Delta-G solvation = -4616.570248 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 447.965 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -50.05089 -41.25994 -40.06729 -39.19362 -38.23937 -37.12628 -36.94518 -34.33054 -33.46294 -31.39676 -31.29660 -30.34811 -27.98061 -26.59720 -26.02949 -24.26964 -24.05486 -22.72180 -21.59282 -20.65317 -19.83723 -19.50191 -18.86843 -18.58261 -18.31024 -17.65465 -17.06951 -16.82539 -16.78504 -16.52331 -16.25007 -15.96158 -15.70694 -15.53185 -15.21403 -15.06925 -14.61969 -14.48517 -14.20885 -14.19172 -14.07144 -14.00437 -13.61902 -13.51177 -13.29719 -13.23671 -13.16878 -13.07487 -12.75359 -12.45217 -12.31336 -12.23280 -12.13638 -11.85279 -11.58360 -11.50542 -11.38063 -11.20439 -10.61778 -10.54120 -10.35990 -9.98717 -9.62356 -9.55776 -4.94012 -0.81502 -0.54746 -0.13994 0.04293 0.33110 0.46877 0.73628 1.24296 1.28425 1.60032 1.97045 1.98533 2.34694 2.63804 3.06497 3.37510 3.43212 3.46744 3.58242 3.61699 3.66440 3.71178 3.97113 4.06202 4.09442 4.11958 4.12755 4.22761 4.27730 4.44300 4.47924 4.72442 4.75436 4.84909 4.86939 4.91403 4.93432 4.95787 5.08347 5.10703 5.14005 5.16852 5.39412 5.55822 5.69064 6.05575 6.52943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.521 6.521 2 C -0.098 4.098 3 Si 0.787 3.213 4 C 0.014 3.986 5 C -0.792 4.792 6 S 2.719 3.281 7 O -0.954 6.954 8 O -0.988 6.988 9 N -1.083 6.083 10 C 0.117 3.883 11 H 0.103 0.897 12 C -0.153 4.153 13 C -0.068 4.068 14 H 0.123 0.877 15 C -0.069 4.069 16 C -0.066 4.066 17 C -0.146 4.146 18 C 0.094 3.906 19 F -0.141 7.141 20 C -0.142 4.142 21 Br -0.043 7.043 22 C -0.065 4.065 23 C -0.126 4.126 24 S 0.210 5.790 25 C -0.146 4.146 26 C -0.177 4.177 27 H 0.379 0.621 28 H 0.124 0.876 29 H -0.300 1.300 30 H -0.269 1.269 31 H 0.431 0.569 32 H 0.074 0.926 33 H 0.103 0.897 34 H 0.168 0.832 35 H 0.159 0.841 36 H 0.156 0.844 37 H 0.106 0.894 38 H 0.099 0.901 39 H 0.208 0.792 40 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.585 5.860 1.126 7.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.328 6.328 2 C -0.208 4.208 3 Si 0.689 3.311 4 C -0.005 4.005 5 C -0.995 4.995 6 S 2.806 3.194 7 O -0.944 6.944 8 O -0.978 6.978 9 N -0.846 5.846 10 C 0.009 3.991 11 H 0.121 0.879 12 C -0.192 4.192 13 C -0.086 4.086 14 H 0.141 0.859 15 C -0.070 4.070 16 C -0.084 4.084 17 C -0.165 4.165 18 C 0.072 3.928 19 F -0.120 7.120 20 C -0.222 4.222 21 Br 0.042 6.958 22 C -0.084 4.084 23 C -0.165 4.165 24 S 0.477 5.523 25 C -0.283 4.283 26 C -0.206 4.206 27 H 0.227 0.773 28 H 0.142 0.858 29 H -0.228 1.228 30 H -0.195 1.195 31 H 0.269 0.731 32 H 0.093 0.907 33 H 0.121 0.879 34 H 0.186 0.814 35 H 0.176 0.824 36 H 0.173 0.827 37 H 0.124 0.876 38 H 0.118 0.882 39 H 0.225 0.775 40 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 4.235 4.192 1.997 6.284 hybrid contribution -0.836 1.244 -0.541 1.593 sum 3.399 5.435 1.456 6.574 Atomic orbital electron populations 1.86888 1.17027 1.79824 1.49034 1.25501 0.84797 1.13286 0.97205 0.94177 0.89356 0.70354 0.77180 1.19257 0.92963 0.91163 0.97076 1.35524 1.29168 1.14321 1.20484 1.01026 0.72754 0.72621 0.72990 1.93693 1.60227 1.72683 1.67787 1.93584 1.81484 1.47207 1.75482 1.55107 1.36655 1.69398 1.23393 1.21790 0.86488 0.92516 0.98294 0.87947 1.23685 1.00605 0.96674 0.98268 1.21667 0.92462 0.95779 0.98725 0.85908 1.19953 0.96980 0.97239 0.92875 1.21449 0.94082 0.96205 0.96656 1.21449 0.97102 0.98016 0.99969 1.17786 0.86241 0.95759 0.92969 1.91528 1.51447 1.76202 1.92796 1.22084 1.01723 1.05981 0.92448 1.96797 1.76214 1.71533 1.51238 1.21088 0.91675 0.93964 1.01674 1.23476 0.95903 1.00162 0.96954 1.84442 1.54790 1.06853 1.06204 1.26599 1.01725 0.95856 1.04156 1.20518 1.03898 1.02998 0.93182 0.77309 0.85774 1.22811 1.19458 0.73066 0.90687 0.87879 0.81406 0.82357 0.82659 0.87571 0.88225 0.77534 0.80937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 -2.54 11.12 -128.48 -1.43 -3.97 16 2 C -0.10 0.09 1.79 71.24 0.13 0.21 16 3 Si 0.79 -3.80 30.46 68.60 2.09 -1.71 16 4 C 0.01 -0.03 5.13 -20.92 -0.11 -0.13 16 5 C -0.79 -0.26 6.54 66.72 0.44 0.18 16 6 S 2.72 9.62 5.61 -56.49 -0.32 9.30 16 7 O -0.95 -8.93 14.29 -119.53 -1.71 -10.64 16 8 O -0.99 -10.22 17.67 -128.00 -2.26 -12.48 16 9 N -1.08 5.50 5.73 -167.20 -0.96 4.54 16 10 C 0.12 -0.82 4.43 45.51 0.20 -0.62 16 11 H 0.10 -0.72 8.05 -2.39 -0.02 -0.74 16 12 C -0.15 1.01 7.25 31.12 0.23 1.24 16 13 C -0.07 0.66 3.81 -11.01 -0.04 0.62 16 14 H 0.12 -1.56 8.07 -2.39 -0.02 -1.58 16 15 C -0.07 0.44 5.29 -19.86 -0.11 0.33 16 16 C -0.07 0.44 9.71 22.27 0.22 0.66 16 17 C -0.15 0.40 10.03 22.31 0.22 0.62 16 18 C 0.09 0.25 7.27 22.39 0.16 0.42 16 19 F -0.14 -0.96 16.73 44.97 0.75 -0.21 16 20 C -0.14 -0.24 6.23 22.35 0.14 -0.10 16 21 Br -0.04 -0.15 33.29 -20.37 -0.68 -0.83 16 22 C -0.06 0.21 8.35 22.28 0.19 0.40 16 23 C -0.13 1.39 7.33 31.12 0.23 1.62 16 24 S 0.21 -0.53 23.21 -56.49 -1.31 -1.85 16 25 C -0.15 1.04 11.23 66.72 0.75 1.79 16 26 C -0.18 1.05 8.74 21.22 0.19 1.23 16 27 H 0.38 -0.69 8.70 -74.06 -0.64 -1.34 16 28 H 0.12 -0.30 7.17 -2.39 -0.02 -0.32 16 29 H -0.30 -1.03 7.11 99.48 0.71 -0.33 16 30 H -0.27 0.77 6.80 99.48 0.68 1.44 16 31 H 0.43 -4.13 8.80 -96.75 -0.85 -4.98 16 32 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 33 H 0.10 -0.78 6.31 -2.38 -0.02 -0.79 16 34 H 0.17 -2.09 8.05 -2.91 -0.02 -2.12 16 35 H 0.16 -0.96 8.06 -2.91 -0.02 -0.98 16 36 H 0.16 -1.00 6.66 -2.91 -0.02 -1.02 16 37 H 0.11 -1.25 7.72 -2.38 -0.02 -1.27 16 38 H 0.10 -1.32 8.14 -2.39 -0.02 -1.34 16 39 H 0.21 -2.78 8.06 -2.91 -0.02 -2.80 16 40 H 0.17 -1.70 5.53 -2.92 -0.02 -1.71 16 Total: 0.00 -26.24 382.58 -3.34 -29.58 By element: Atomic # 1 Polarization: -19.87 SS G_CDS: -0.35 Total: -20.21 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 2.83 Total: 8.47 kcal Atomic # 7 Polarization: 5.50 SS G_CDS: -0.96 Total: 4.54 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -5.40 Total: -27.08 kcal Atomic # 9 Polarization: -0.96 SS G_CDS: 0.75 Total: -0.21 kcal Atomic # 14 Polarization: -3.80 SS G_CDS: 2.09 Total: -1.71 kcal Atomic # 16 Polarization: 9.08 SS G_CDS: -1.63 Total: 7.45 kcal Atomic # 35 Polarization: -0.15 SS G_CDS: -0.68 Total: -0.83 kcal Total: -26.24 -3.34 -29.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9650944_13652106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.472 kcal (2) G-P(sol) polarization free energy of solvation -26.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds