Wall clock time and date at job start Mon Mar 8 2021 12:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86294 * 1 3 3 C 1.86306 * 109.46824 * 2 1 4 4 C 1.86300 * 109.47389 * 240.00034 * 2 1 3 5 5 C 1.86299 * 109.47355 * 119.99584 * 2 1 3 6 6 C 1.53005 * 109.46744 * 60.00486 * 5 2 1 7 7 C 1.53004 * 109.47044 * 179.97438 * 6 5 2 8 8 N 1.46499 * 109.47094 * 179.97438 * 7 6 5 9 9 S 1.65597 * 119.99926 * 165.27799 * 8 7 6 10 10 O 1.42096 * 106.40195 * 178.26439 * 9 8 7 11 11 O 1.42108 * 106.40105 * 311.18495 * 9 8 7 12 12 C 1.76199 * 107.22117 * 64.72196 * 9 8 7 13 13 C 1.33390 * 122.54075 * 269.71156 * 12 9 8 14 14 S 1.75890 * 109.59293 * 179.90130 * 13 12 9 15 15 C 1.75878 * 90.97067 * 0.30204 * 14 13 12 16 16 C 1.50703 * 125.20287 * 179.78823 * 15 14 13 17 17 O 1.42900 * 109.46570 * 120.04397 * 16 15 14 18 18 Si 1.86298 * 109.46912 * 0.04645 * 16 15 14 19 19 H 1.48497 * 109.47343 * 59.99640 * 18 16 15 20 20 H 1.48507 * 109.46942 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47026 * 299.99369 * 18 16 15 22 22 C 1.33389 * 109.59513 * 359.82969 * 15 14 13 23 23 H 1.09005 * 109.47161 * 299.99516 * 1 2 3 24 24 H 1.08998 * 109.47490 * 59.99965 * 1 2 3 25 25 H 1.09005 * 109.46991 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47093 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47070 * 299.99724 * 3 2 1 28 28 H 1.08998 * 109.47473 * 60.00172 * 3 2 1 29 29 H 1.08996 * 109.46807 * 300.00039 * 4 2 1 30 30 H 1.08998 * 109.46803 * 59.99581 * 4 2 1 31 31 H 1.08995 * 109.47231 * 179.97438 * 4 2 1 32 32 H 1.08996 * 109.47759 * 300.00330 * 5 2 1 33 33 H 1.09002 * 109.47274 * 179.97438 * 5 2 1 34 34 H 1.08994 * 109.47357 * 60.00189 * 6 5 2 35 35 H 1.09002 * 109.47067 * 299.99417 * 6 5 2 36 36 H 1.09007 * 109.47007 * 59.99772 * 7 6 5 37 37 H 1.08995 * 109.47080 * 300.00016 * 7 6 5 38 38 H 0.97001 * 119.99790 * 344.99588 * 8 7 6 39 39 H 1.08001 * 125.20245 * 0.02562 * 13 12 9 40 40 H 1.09001 * 109.47307 * 240.04203 * 16 15 14 41 41 H 0.96699 * 114.00528 * 300.00129 * 17 16 15 42 42 H 1.07999 * 122.53888 * 180.02562 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4840 -0.8781 1.5212 6 6 1.9741 -2.3207 1.5211 7 6 2.4846 -3.0421 2.7701 8 7 1.9959 -4.4232 2.7704 9 16 2.6716 -5.5404 3.7890 10 8 1.9618 -6.7537 3.5813 11 8 4.0794 -5.4267 3.6320 12 6 2.3119 -5.0292 5.4364 13 6 3.1209 -4.2286 6.1320 14 16 2.4347 -3.9366 7.7250 15 6 1.0514 -4.9555 7.3487 16 6 -0.0938 -5.2459 8.2844 17 8 -1.3155 -4.7952 7.6960 18 14 0.1828 -4.3579 9.8986 19 1 0.2620 -2.8957 9.6520 20 1 -0.9459 -4.6436 10.8204 21 1 1.4525 -4.8263 10.5100 22 6 1.1713 -5.4326 6.1089 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.5739 1.7566 -0.0005 27 1 2.1205 2.2703 -0.8900 28 1 2.1206 2.2704 0.8900 29 1 2.1207 -1.9058 -1.5211 30 1 2.1206 -0.3644 -2.4111 31 1 3.5740 -0.8778 -1.5213 32 1 2.1207 -0.3643 2.4112 33 1 3.5740 -0.8785 1.5209 34 1 2.3374 -2.8345 0.6312 35 1 0.8841 -2.3207 1.5212 36 1 2.1216 -2.5283 3.6603 37 1 3.5746 -3.0420 2.7697 38 1 1.2737 -4.6821 2.1769 39 1 4.0535 -3.8203 5.7714 40 1 -0.1519 -6.3192 8.4654 41 1 -1.3349 -3.8471 7.5070 42 1 0.4340 -6.0840 5.6633 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_9703892_15065232.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:11:27 Heat of formation + Delta-G solvation = -129.124755 kcal Electronic energy + Delta-G solvation = -22734.612779 eV Core-core repulsion = 19284.462798 eV Total energy + Delta-G solvation = -3450.149981 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 337.080 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.53807 -38.26432 -37.61413 -37.38777 -36.82974 -33.16903 -31.87720 -29.57492 -28.48684 -28.46861 -27.28491 -26.42220 -24.95461 -22.69555 -21.43516 -20.14213 -19.21470 -18.45413 -18.01501 -17.71279 -17.22954 -16.46084 -16.43599 -15.95806 -15.67078 -15.09785 -14.59077 -14.51858 -14.33227 -14.31448 -14.18467 -14.06844 -14.00829 -13.80383 -13.70547 -13.33153 -13.24309 -13.14716 -13.14557 -13.02961 -12.89929 -12.70439 -12.65864 -12.52865 -12.49015 -12.19715 -11.98763 -11.59067 -10.88311 -10.84970 -10.76405 -10.70414 -10.53728 -10.23101 -9.89701 -0.75153 -0.51410 0.24304 0.50093 0.94439 0.99780 1.25146 1.35452 1.71778 1.75028 1.80994 1.82423 2.07103 2.57315 2.73354 3.19275 3.35038 3.58995 3.77731 3.85357 3.93741 4.06763 4.19658 4.39186 4.46972 4.49169 4.60957 4.64241 4.66486 4.69418 4.70554 4.70864 4.72625 4.74290 4.86604 4.94922 5.04163 5.06259 5.28827 5.43502 5.49500 5.51668 5.86878 6.32984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.452 4.452 2 Si 1.011 2.989 3 C -0.452 4.452 4 C -0.452 4.452 5 C -0.414 4.414 6 C -0.117 4.117 7 C 0.114 3.886 8 N -1.116 6.116 9 S 2.709 3.291 10 O -0.951 6.951 11 O -0.953 6.953 12 C -0.686 4.686 13 C -0.082 4.082 14 S 0.140 5.860 15 C -0.229 4.229 16 C -0.040 4.040 17 O -0.531 6.531 18 Si 0.895 3.105 19 H -0.234 1.234 20 H -0.224 1.224 21 H -0.233 1.233 22 C -0.039 4.039 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.081 0.919 38 H 0.421 0.579 39 H 0.186 0.814 40 H 0.130 0.870 41 H 0.378 0.622 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.210 5.276 0.597 5.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.559 4.559 2 Si 1.207 2.793 3 C -0.560 4.560 4 C -0.560 4.560 5 C -0.500 4.500 6 C -0.156 4.156 7 C -0.012 4.012 8 N -0.877 5.877 9 S 2.796 3.204 10 O -0.941 6.941 11 O -0.943 6.943 12 C -0.786 4.786 13 C -0.221 4.221 14 S 0.404 5.596 15 C -0.346 4.346 16 C -0.153 4.153 17 O -0.336 6.336 18 Si 0.714 3.286 19 H -0.157 1.157 20 H -0.146 1.146 21 H -0.156 1.156 22 C -0.068 4.068 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.256 0.744 39 H 0.203 0.797 40 H 0.148 0.852 41 H 0.225 0.775 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.166 5.240 2.665 5.881 hybrid contribution -0.800 -0.072 -1.341 1.563 sum -0.966 5.169 1.324 5.422 Atomic orbital electron populations 1.26172 1.20932 1.04383 1.04384 0.79176 0.66933 0.66678 0.66506 1.26148 1.06270 1.19140 1.04397 1.26177 1.06301 1.08072 1.15417 1.26166 1.06275 1.01479 1.16075 1.21402 1.01433 0.95286 0.97434 1.21504 0.99791 0.80119 0.99798 1.55546 1.53353 1.23445 1.55345 1.01600 0.73704 0.72550 0.72596 1.93616 1.74148 1.41487 1.84898 1.93609 1.29229 1.86176 1.85272 1.30104 1.05464 1.15610 1.27394 1.25858 1.01938 0.97530 0.96813 1.84496 1.15009 1.45807 1.14263 1.25065 1.02131 1.06638 1.00800 1.24399 0.82320 1.06246 1.02324 1.86560 1.33526 1.29481 1.83998 0.86285 0.83701 0.81039 0.77602 1.15721 1.14630 1.15567 1.19613 0.95583 0.98564 0.93046 0.91337 0.91327 0.91258 0.91271 0.91288 0.91325 0.91233 0.91346 0.91249 0.90281 0.90118 0.90635 0.90841 0.91770 0.90090 0.74402 0.79665 0.85248 0.77490 0.82282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.18 8.65 101.05 0.87 2.05 16 2 Si 1.01 -3.95 12.19 -169.99 -2.07 -6.02 16 3 C -0.45 1.04 8.65 101.05 0.87 1.91 16 4 C -0.45 1.04 8.65 101.05 0.87 1.91 16 5 C -0.41 1.54 4.45 37.16 0.17 1.71 16 6 C -0.12 0.39 4.73 -26.73 -0.13 0.26 16 7 C 0.11 -0.28 6.22 -4.04 -0.03 -0.31 16 8 N -1.12 1.86 6.00 -10.61 -0.06 1.79 16 9 S 2.71 3.52 5.80 -107.50 -0.62 2.90 16 10 O -0.95 -4.15 17.63 -57.17 -1.01 -5.16 16 11 O -0.95 -3.76 17.12 -57.17 -0.98 -4.74 16 12 C -0.69 -0.35 5.86 -41.21 -0.24 -0.59 16 13 C -0.08 0.04 10.70 29.04 0.31 0.35 16 14 S 0.14 -0.09 20.58 -107.50 -2.21 -2.30 16 15 C -0.23 0.01 5.72 -36.00 -0.21 -0.20 16 16 C -0.04 0.04 2.96 36.01 0.11 0.15 16 17 O -0.53 0.34 12.86 -35.23 -0.45 -0.11 16 18 Si 0.89 -1.10 26.25 -169.99 -4.46 -5.56 16 19 H -0.23 0.30 7.11 56.52 0.40 0.70 16 20 H -0.22 0.06 7.11 56.52 0.40 0.46 16 21 H -0.23 0.14 7.11 56.52 0.40 0.54 16 22 C -0.04 -0.03 9.56 -41.21 -0.39 -0.42 16 23 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 24 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 25 H 0.07 -0.19 7.79 -51.93 -0.40 -0.59 16 26 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 27 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 28 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 29 H 0.07 -0.16 7.79 -51.93 -0.40 -0.56 16 30 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 31 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 32 H 0.08 -0.32 7.96 -51.93 -0.41 -0.74 16 33 H 0.08 -0.30 7.96 -51.93 -0.41 -0.71 16 34 H 0.08 -0.26 7.79 -51.93 -0.40 -0.67 16 35 H 0.07 -0.31 7.79 -51.93 -0.40 -0.71 16 36 H 0.06 -0.23 8.14 -51.93 -0.42 -0.66 16 37 H 0.08 -0.18 7.76 -51.93 -0.40 -0.58 16 38 H 0.42 -1.39 8.65 -34.47 -0.30 -1.69 16 39 H 0.19 -0.48 8.00 -52.49 -0.42 -0.90 16 40 H 0.13 -0.23 7.96 -51.93 -0.41 -0.65 16 41 H 0.38 -1.50 8.70 45.56 0.40 -1.11 16 42 H 0.16 0.07 7.97 -52.49 -0.42 -0.35 16 LS Contribution 375.92 15.07 5.67 5.67 Total: 0.00 -8.72 375.92 -10.11 -18.83 By element: Atomic # 1 Polarization: -6.01 SS G_CDS: -6.11 Total: -12.13 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: 2.21 Total: 6.83 kcal Atomic # 7 Polarization: 1.86 SS G_CDS: -0.06 Total: 1.79 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: -2.44 Total: -10.01 kcal Atomic # 14 Polarization: -5.05 SS G_CDS: -6.53 Total: -11.58 kcal Atomic # 16 Polarization: 3.43 SS G_CDS: -2.84 Total: 0.60 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -8.72 -10.11 -18.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9703892_15065232.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.294 kcal (2) G-P(sol) polarization free energy of solvation -8.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds