Wall clock time and date at job start Mon Mar 8 2021 12:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86294 * 1 3 3 C 1.86306 * 109.46824 * 2 1 4 4 C 1.86300 * 109.47389 * 240.00034 * 2 1 3 5 5 C 1.86299 * 109.47355 * 119.99584 * 2 1 3 6 6 C 1.53005 * 109.46744 * 60.00486 * 5 2 1 7 7 C 1.53004 * 109.47044 * 179.97438 * 6 5 2 8 8 N 1.46499 * 109.47094 * 179.97438 * 7 6 5 9 9 S 1.65597 * 119.99926 * 165.27799 * 8 7 6 10 10 O 1.42096 * 106.40195 * 178.26439 * 9 8 7 11 11 O 1.42108 * 106.40105 * 311.18495 * 9 8 7 12 12 C 1.76199 * 107.22117 * 64.72196 * 9 8 7 13 13 C 1.33390 * 122.54075 * 269.71156 * 12 9 8 14 14 S 1.75890 * 109.59293 * 179.90130 * 13 12 9 15 15 C 1.75878 * 90.97067 * 0.30204 * 14 13 12 16 16 C 1.50703 * 125.20287 * 179.78823 * 15 14 13 17 17 O 1.42900 * 109.46570 * 120.04397 * 16 15 14 18 18 Si 1.86298 * 109.46912 * 0.04645 * 16 15 14 19 19 H 1.48497 * 109.47343 * 59.99640 * 18 16 15 20 20 H 1.48507 * 109.46942 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47026 * 299.99369 * 18 16 15 22 22 C 1.33389 * 109.59513 * 359.82969 * 15 14 13 23 23 H 1.09005 * 109.47161 * 299.99516 * 1 2 3 24 24 H 1.08998 * 109.47490 * 59.99965 * 1 2 3 25 25 H 1.09005 * 109.46991 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47093 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47070 * 299.99724 * 3 2 1 28 28 H 1.08998 * 109.47473 * 60.00172 * 3 2 1 29 29 H 1.08996 * 109.46807 * 300.00039 * 4 2 1 30 30 H 1.08998 * 109.46803 * 59.99581 * 4 2 1 31 31 H 1.08995 * 109.47231 * 179.97438 * 4 2 1 32 32 H 1.08996 * 109.47759 * 300.00330 * 5 2 1 33 33 H 1.09002 * 109.47274 * 179.97438 * 5 2 1 34 34 H 1.08994 * 109.47357 * 60.00189 * 6 5 2 35 35 H 1.09002 * 109.47067 * 299.99417 * 6 5 2 36 36 H 1.09007 * 109.47007 * 59.99772 * 7 6 5 37 37 H 1.08995 * 109.47080 * 300.00016 * 7 6 5 38 38 H 0.97001 * 119.99790 * 344.99588 * 8 7 6 39 39 H 1.08001 * 125.20245 * 0.02562 * 13 12 9 40 40 H 1.09001 * 109.47307 * 240.04203 * 16 15 14 41 41 H 0.96699 * 114.00528 * 300.00129 * 17 16 15 42 42 H 1.07999 * 122.53888 * 180.02562 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4840 -0.8781 1.5212 6 6 1.9741 -2.3207 1.5211 7 6 2.4846 -3.0421 2.7701 8 7 1.9959 -4.4232 2.7704 9 16 2.6716 -5.5404 3.7890 10 8 1.9618 -6.7537 3.5813 11 8 4.0794 -5.4267 3.6320 12 6 2.3119 -5.0292 5.4364 13 6 3.1209 -4.2286 6.1320 14 16 2.4347 -3.9366 7.7250 15 6 1.0514 -4.9555 7.3487 16 6 -0.0938 -5.2459 8.2844 17 8 -1.3155 -4.7952 7.6960 18 14 0.1828 -4.3579 9.8986 19 1 0.2620 -2.8957 9.6520 20 1 -0.9459 -4.6436 10.8204 21 1 1.4525 -4.8263 10.5100 22 6 1.1713 -5.4326 6.1089 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.5739 1.7566 -0.0005 27 1 2.1205 2.2703 -0.8900 28 1 2.1206 2.2704 0.8900 29 1 2.1207 -1.9058 -1.5211 30 1 2.1206 -0.3644 -2.4111 31 1 3.5740 -0.8778 -1.5213 32 1 2.1207 -0.3643 2.4112 33 1 3.5740 -0.8785 1.5209 34 1 2.3374 -2.8345 0.6312 35 1 0.8841 -2.3207 1.5212 36 1 2.1216 -2.5283 3.6603 37 1 3.5746 -3.0420 2.7697 38 1 1.2737 -4.6821 2.1769 39 1 4.0535 -3.8203 5.7714 40 1 -0.1519 -6.3192 8.4654 41 1 -1.3349 -3.8471 7.5070 42 1 0.4340 -6.0840 5.6633 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_9703892_15065232.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:11:26 Heat of formation + Delta-G solvation = -128.339015 kcal Electronic energy + Delta-G solvation = -22734.578707 eV Core-core repulsion = 19284.462798 eV Total energy + Delta-G solvation = -3450.115909 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 337.080 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.50134 -38.44432 -37.54234 -37.22551 -37.03626 -32.96320 -31.83335 -29.36365 -28.27271 -28.25084 -27.23092 -26.20576 -24.93728 -22.43443 -21.41911 -20.15778 -19.17118 -18.51053 -17.97263 -17.71804 -17.17171 -16.34990 -16.20713 -15.91528 -15.70325 -15.06680 -14.50996 -14.30529 -14.23403 -14.12266 -14.02146 -13.98759 -13.89073 -13.62417 -13.56251 -13.35486 -13.24199 -13.16911 -13.04180 -12.94384 -12.93923 -12.59025 -12.50532 -12.41510 -12.40592 -12.13113 -11.72036 -11.54550 -10.67616 -10.66183 -10.62047 -10.52606 -10.31765 -10.18323 -9.85928 -0.79340 -0.50465 0.28926 0.53842 0.96699 1.05700 1.34939 1.43932 1.83412 1.98452 2.07591 2.09316 2.12791 2.66670 2.80917 3.21885 3.43480 3.65719 3.88264 4.06773 4.18369 4.23210 4.36665 4.51133 4.62693 4.71151 4.78148 4.83854 4.86244 4.88860 4.89605 4.90168 4.91341 4.92497 4.96939 5.04066 5.22942 5.36558 5.56326 5.66441 5.71945 5.73093 6.06716 6.59612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.467 4.467 2 Si 1.082 2.918 3 C -0.471 4.471 4 C -0.472 4.472 5 C -0.419 4.419 6 C -0.122 4.122 7 C 0.104 3.896 8 N -1.106 6.106 9 S 2.725 3.275 10 O -0.988 6.988 11 O -0.983 6.983 12 C -0.692 4.692 13 C -0.082 4.082 14 S 0.156 5.844 15 C -0.232 4.232 16 C -0.040 4.040 17 O -0.544 6.544 18 Si 0.919 3.081 19 H -0.230 1.230 20 H -0.239 1.239 21 H -0.241 1.241 22 C -0.053 4.053 23 H 0.069 0.931 24 H 0.060 0.940 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.429 0.571 39 H 0.205 0.795 40 H 0.134 0.866 41 H 0.391 0.609 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.306 6.103 1.144 6.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.573 4.573 2 Si 1.273 2.727 3 C -0.577 4.577 4 C -0.577 4.577 5 C -0.505 4.505 6 C -0.161 4.161 7 C -0.021 4.021 8 N -0.870 5.870 9 S 2.813 3.187 10 O -0.978 6.978 11 O -0.973 6.973 12 C -0.793 4.793 13 C -0.221 4.221 14 S 0.420 5.580 15 C -0.349 4.349 16 C -0.153 4.153 17 O -0.351 6.351 18 Si 0.739 3.261 19 H -0.153 1.153 20 H -0.162 1.162 21 H -0.165 1.165 22 C -0.082 4.082 23 H 0.088 0.912 24 H 0.080 0.920 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.266 0.734 39 H 0.222 0.778 40 H 0.152 0.848 41 H 0.241 0.759 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -0.264 6.078 3.166 6.859 hybrid contribution -0.787 -0.266 -1.506 1.720 sum -1.051 5.812 1.660 6.135 Atomic orbital electron populations 1.26363 1.22334 1.04467 1.04106 0.78080 0.65036 0.64515 0.65025 1.26392 1.06308 1.20837 1.04128 1.26432 1.06256 1.08499 1.16536 1.26219 1.06545 1.01198 1.16512 1.21484 1.02246 0.95371 0.97002 1.21728 0.99854 0.79469 1.01036 1.55289 1.53451 1.23445 1.54775 1.00803 0.72817 0.72201 0.72865 1.93562 1.74629 1.43958 1.85645 1.93566 1.31107 1.86675 1.85920 1.29894 1.05943 1.16517 1.26909 1.26154 1.02313 0.96857 0.96774 1.84445 1.14446 1.45215 1.13859 1.25220 1.02572 1.06491 1.00665 1.24473 0.81964 1.06725 1.02143 1.86528 1.33624 1.30914 1.84036 0.85941 0.82454 0.80992 0.76688 1.15291 1.16238 1.16478 1.19674 0.95862 0.99099 0.93572 0.91221 0.92025 0.90998 0.91463 0.91934 0.91241 0.91163 0.91994 0.91558 0.89351 0.89882 0.90555 0.89706 0.90255 0.90376 0.73394 0.77830 0.84847 0.75925 0.82628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 2.65 8.65 113.37 0.98 3.63 16 2 Si 1.08 -8.97 12.19 68.60 0.84 -8.14 16 3 C -0.47 2.17 8.65 113.37 0.98 3.15 16 4 C -0.47 2.09 8.65 113.37 0.98 3.07 16 5 C -0.42 3.63 4.45 71.98 0.32 3.95 16 6 C -0.12 0.94 4.73 30.60 0.14 1.09 16 7 C 0.10 -0.60 6.22 86.38 0.54 -0.06 16 8 N -1.11 3.77 6.00 -187.48 -1.12 2.65 16 9 S 2.72 8.81 5.80 -56.49 -0.33 8.48 16 10 O -0.99 -9.87 17.63 -128.00 -2.26 -12.13 16 11 O -0.98 -8.39 17.12 -128.00 -2.19 -10.58 16 12 C -0.69 -0.74 5.86 21.22 0.12 -0.62 16 13 C -0.08 0.14 10.70 66.72 0.71 0.85 16 14 S 0.16 -0.32 20.58 -56.49 -1.16 -1.48 16 15 C -0.23 0.08 5.72 24.59 0.14 0.22 16 16 C -0.04 0.09 2.96 71.24 0.21 0.30 16 17 O -0.54 0.85 12.86 -148.98 -1.92 -1.06 16 18 Si 0.92 -2.60 26.25 68.60 1.80 -0.80 16 19 H -0.23 0.83 7.11 99.48 0.71 1.53 16 20 H -0.24 0.10 7.11 99.48 0.71 0.80 16 21 H -0.24 0.36 7.11 99.48 0.71 1.07 16 22 C -0.05 -0.09 9.56 21.22 0.20 0.11 16 23 H 0.07 -0.40 7.96 -2.38 -0.02 -0.42 16 24 H 0.06 -0.25 7.96 -2.39 -0.02 -0.27 16 25 H 0.07 -0.44 7.79 -2.38 -0.02 -0.45 16 26 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 27 H 0.06 -0.21 7.96 -2.39 -0.02 -0.22 16 28 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 29 H 0.07 -0.32 7.79 -2.39 -0.02 -0.34 16 30 H 0.06 -0.19 7.96 -2.39 -0.02 -0.21 16 31 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 32 H 0.09 -0.89 7.96 -2.39 -0.02 -0.91 16 33 H 0.08 -0.72 7.96 -2.39 -0.02 -0.74 16 34 H 0.08 -0.59 7.79 -2.39 -0.02 -0.61 16 35 H 0.08 -0.84 7.79 -2.39 -0.02 -0.86 16 36 H 0.08 -0.69 8.14 -2.38 -0.02 -0.71 16 37 H 0.08 -0.39 7.76 -2.39 -0.02 -0.41 16 38 H 0.43 -2.86 8.65 -96.74 -0.84 -3.70 16 39 H 0.20 -1.26 8.00 -2.91 -0.02 -1.28 16 40 H 0.13 -0.47 7.96 -2.39 -0.02 -0.49 16 41 H 0.39 -3.32 8.70 -74.06 -0.64 -3.97 16 42 H 0.16 0.28 7.97 -2.91 -0.02 0.26 16 Total: 0.00 -19.48 375.92 -0.71 -20.19 By element: Atomic # 1 Polarization: -13.12 SS G_CDS: 0.29 Total: -12.83 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: 5.34 Total: 15.69 kcal Atomic # 7 Polarization: 3.77 SS G_CDS: -1.12 Total: 2.65 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -6.36 Total: -23.77 kcal Atomic # 14 Polarization: -11.57 SS G_CDS: 2.64 Total: -8.93 kcal Atomic # 16 Polarization: 8.49 SS G_CDS: -1.49 Total: 7.00 kcal Total: -19.48 -0.71 -20.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9703892_15065232.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.145 kcal (2) G-P(sol) polarization free energy of solvation -19.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds