Wall clock time and date at job start Mon Mar 8 2021 12:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86302 * 109.47227 * 2 1 4 4 C 1.50705 * 109.46781 * 119.99768 * 2 1 3 5 5 C 1.38234 * 120.00143 * 64.99902 * 4 2 1 6 6 C 1.38233 * 119.99752 * 179.97438 * 5 4 2 7 7 C 1.38230 * 120.00639 * 359.97438 * 6 5 4 8 8 S 1.76197 * 120.00363 * 180.02562 * 7 6 5 9 9 O 1.42100 * 106.39925 * 336.45775 * 8 7 6 10 10 O 1.42103 * 106.39966 * 203.53891 * 8 7 6 11 11 N 1.65597 * 107.21750 * 89.99871 * 8 7 6 12 12 C 1.46506 * 120.00079 * 65.00357 * 11 8 7 13 13 H 1.08998 * 112.84479 * 15.05119 * 12 11 8 14 14 C 1.53776 * 113.61413 * 146.24947 * 12 11 8 15 15 C 1.53781 * 87.07944 * 89.11718 * 14 12 11 16 16 H 1.08996 * 113.61484 * 270.88178 * 15 14 12 17 17 C 1.50703 * 113.61830 * 140.06400 * 15 14 12 18 18 C 1.38238 * 119.99801 * 299.73058 * 17 15 14 19 19 C 1.38235 * 119.99950 * 179.76473 * 18 17 15 20 20 C 1.38233 * 119.99771 * 0.47911 * 19 18 17 21 21 C 1.50704 * 119.99510 * 179.76913 * 20 19 18 22 22 F 1.39899 * 109.47094 * 270.01823 * 21 20 19 23 23 F 1.39896 * 109.47518 * 30.02390 * 21 20 19 24 24 F 1.39903 * 109.46867 * 150.02360 * 21 20 19 25 25 C 1.38233 * 120.00045 * 359.79668 * 20 19 18 26 26 C 1.38228 * 120.00349 * 359.94645 * 25 20 19 27 27 C 1.53779 * 113.61421 * 243.86016 * 12 11 8 28 28 C 1.38239 * 119.99689 * 0.27101 * 7 6 5 29 29 C 1.38234 * 119.99757 * 359.54188 * 28 7 6 30 30 H 0.96695 * 113.99441 * 60.00353 * 1 2 3 31 31 H 1.08995 * 109.47574 * 239.99601 * 2 1 3 32 32 H 1.48507 * 109.99734 * 298.67843 * 3 2 1 33 33 H 1.48496 * 109.99974 * 59.99665 * 3 2 1 34 34 H 1.08002 * 119.99626 * 0.02562 * 5 4 2 35 35 H 1.08001 * 119.99691 * 180.02562 * 6 5 4 36 36 H 0.97005 * 120.00050 * 244.72378 * 11 8 7 37 37 H 1.09000 * 113.61283 * 203.65906 * 14 12 11 38 38 H 1.08990 * 113.61779 * 334.48514 * 14 12 11 39 39 H 1.08004 * 120.00038 * 359.97438 * 18 17 15 40 40 H 1.08006 * 119.99779 * 180.24700 * 19 18 17 41 41 H 1.08006 * 119.99465 * 179.97438 * 25 20 19 42 42 H 1.07995 * 120.00666 * 180.02562 * 26 25 20 43 43 H 1.09009 * 113.61312 * 25.42797 * 27 12 11 44 44 H 1.08996 * 113.61800 * 156.33002 * 27 12 11 45 45 H 1.07994 * 119.99903 * 179.72051 * 28 7 6 46 46 H 1.08004 * 120.00387 * 180.22662 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9313 -0.7104 1.2306 5 6 1.6847 -2.0601 1.3985 6 6 2.1458 -2.7118 2.5270 7 6 2.8541 -2.0139 3.4873 8 16 3.4425 -2.8448 4.9254 9 8 2.6130 -3.9857 5.0972 10 8 3.6100 -1.8480 5.9243 11 7 4.9571 -3.4160 4.5762 12 6 6.0503 -2.4780 4.3091 13 1 5.8191 -1.4591 4.6199 14 6 7.4214 -2.9748 4.7969 15 6 7.5832 -3.6385 3.4191 16 1 7.1890 -4.6537 3.3746 17 6 8.9760 -3.5264 2.8547 18 6 9.5275 -2.2811 2.6177 19 6 10.8069 -2.1781 2.1046 20 6 11.5311 -3.3205 1.8192 21 6 12.9240 -3.2082 1.2549 22 9 12.8603 -3.1811 -0.1424 23 9 13.5211 -2.0306 1.7174 24 9 13.6837 -4.3088 1.6658 25 6 10.9775 -4.5657 2.0508 26 6 9.7001 -4.6687 2.5689 27 6 6.6090 -2.5740 2.8796 28 6 3.0964 -0.6631 3.3218 29 6 2.6386 -0.0122 2.1914 30 1 -0.3932 0.4416 -0.7651 31 1 1.7924 -0.5139 -0.8899 32 1 1.5880 2.4585 -1.2243 33 1 1.5615 2.4679 1.2084 34 1 1.1323 -2.6056 0.6477 35 1 1.9535 -3.7664 2.6581 36 1 5.1215 -4.3718 4.5525 37 1 8.1360 -2.1727 4.9817 38 1 7.3604 -3.6856 5.6209 39 1 8.9600 -1.3886 2.8367 40 1 11.2393 -1.2052 1.9232 41 1 11.5432 -5.4582 1.8274 42 1 9.2676 -5.6415 2.7503 43 1 5.8924 -2.9627 2.1559 44 1 7.1018 -1.6626 2.5412 45 1 3.6459 -0.1169 4.0741 46 1 2.8310 1.0424 2.0603 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_9705042_13421422.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:33:14 Heat of formation + Delta-G solvation = -167.709268 kcal Electronic energy + Delta-G solvation = -36562.965402 eV Core-core repulsion = 31097.166498 eV Total energy + Delta-G solvation = -5465.798904 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 414.095 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -51.19462 -48.72085 -48.67139 -41.24039 -40.59692 -39.34963 -38.36799 -37.83504 -37.01305 -34.49688 -33.15002 -32.33895 -32.17650 -31.94624 -27.72370 -27.23398 -26.53244 -24.99365 -24.06851 -23.93231 -22.80583 -22.44519 -20.87357 -20.19435 -19.55124 -19.48374 -19.35851 -19.20844 -18.65846 -18.52482 -17.26795 -17.03772 -16.91897 -16.68096 -16.30733 -15.87638 -15.81668 -15.79137 -15.50555 -15.42589 -15.35295 -15.13146 -14.92515 -14.83669 -14.80345 -14.62088 -14.58096 -14.40329 -14.29892 -14.16830 -13.99722 -13.92619 -13.61700 -13.32976 -13.24765 -13.21883 -13.17928 -12.84626 -12.58209 -12.40995 -12.29722 -11.97245 -11.89152 -11.72294 -11.68229 -11.11521 -10.65653 -10.44400 -10.30141 -10.10900 -9.99764 -9.85654 -4.97787 -0.72385 -0.34739 -0.06302 0.22557 0.33872 1.22094 1.57020 1.66481 1.89763 1.92840 2.33830 2.48206 2.72708 2.73685 3.00966 3.23202 3.25714 3.39708 3.54899 3.67335 3.70367 3.75822 3.78855 3.85706 3.91068 3.94902 4.04653 4.18826 4.21551 4.31225 4.32515 4.38222 4.42346 4.46011 4.62796 4.74433 4.79471 4.86824 4.91990 4.95527 4.97817 5.01140 5.06838 5.15338 5.20329 5.24671 5.27023 5.29167 5.50187 5.65982 5.72437 5.84708 6.08989 6.50070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.096 4.096 3 Si 0.768 3.232 4 C -0.027 4.027 5 C -0.124 4.124 6 C -0.026 4.026 7 C -0.675 4.675 8 S 2.715 3.285 9 O -0.990 6.990 10 O -0.982 6.982 11 N -1.086 6.086 12 C 0.115 3.885 13 H 0.117 0.883 14 C -0.131 4.131 15 C -0.078 4.078 16 H 0.111 0.889 17 C -0.036 4.036 18 C -0.117 4.117 19 C -0.076 4.076 20 C -0.204 4.204 21 C 0.505 3.495 22 F -0.185 7.185 23 F -0.182 7.182 24 F -0.184 7.184 25 C -0.080 4.080 26 C -0.123 4.123 27 C -0.142 4.142 28 C -0.019 4.019 29 C -0.142 4.142 30 H 0.398 0.602 31 H 0.106 0.894 32 H -0.286 1.286 33 H -0.297 1.297 34 H 0.142 0.858 35 H 0.150 0.850 36 H 0.429 0.571 37 H 0.108 0.892 38 H 0.080 0.920 39 H 0.162 0.838 40 H 0.143 0.857 41 H 0.137 0.863 42 H 0.150 0.850 43 H 0.083 0.917 44 H 0.114 0.886 45 H 0.161 0.839 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.548 1.188 -4.194 4.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.368 6.368 2 C -0.204 4.204 3 Si 0.673 3.327 4 C -0.027 4.027 5 C -0.142 4.142 6 C -0.045 4.045 7 C -0.763 4.763 8 S 2.806 3.194 9 O -0.980 6.980 10 O -0.972 6.972 11 N -0.847 5.847 12 C 0.007 3.993 13 H 0.135 0.865 14 C -0.170 4.170 15 C -0.097 4.097 16 H 0.129 0.871 17 C -0.036 4.036 18 C -0.135 4.135 19 C -0.094 4.094 20 C -0.206 4.206 21 C 0.451 3.549 22 F -0.166 7.166 23 F -0.163 7.163 24 F -0.166 7.166 25 C -0.098 4.098 26 C -0.140 4.140 27 C -0.181 4.181 28 C -0.038 4.038 29 C -0.160 4.160 30 H 0.249 0.751 31 H 0.123 0.877 32 H -0.214 1.214 33 H -0.225 1.225 34 H 0.160 0.840 35 H 0.167 0.833 36 H 0.266 0.734 37 H 0.126 0.874 38 H 0.099 0.901 39 H 0.179 0.821 40 H 0.161 0.839 41 H 0.155 0.845 42 H 0.167 0.833 43 H 0.101 0.899 44 H 0.132 0.868 45 H 0.179 0.821 46 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 0.983 1.790 -2.863 3.517 hybrid contribution -0.726 -0.462 -1.474 1.707 sum 0.257 1.327 -4.336 4.542 Atomic orbital electron populations 1.86543 1.18160 1.80805 1.51309 1.25160 0.84418 1.12246 0.98582 0.94156 0.90064 0.71899 0.76580 1.19864 0.94098 0.94226 0.94530 1.21328 0.99906 0.94422 0.98582 1.21119 0.91441 1.00612 0.91325 1.30833 1.16710 1.06717 1.22042 1.01034 0.72339 0.72509 0.73479 1.93572 1.67130 1.51254 1.86050 1.93575 1.85997 1.61699 1.55922 1.55045 1.24068 1.17341 1.88241 1.21883 0.86873 0.93257 0.97258 0.86506 1.23433 0.95756 1.01482 0.96336 1.21775 0.90395 1.01098 0.96387 0.87055 1.20183 0.95957 0.92887 0.94562 1.21309 0.94284 0.98810 0.99051 1.21163 0.94832 0.97563 0.95890 1.20019 0.93086 0.97549 1.09909 1.18573 0.87345 0.73300 0.75681 1.93215 1.96722 1.96139 1.30546 1.93181 1.85872 1.48702 1.88584 1.93180 1.78672 1.54504 1.90202 1.21114 0.96290 0.96068 0.96340 1.21324 0.93451 1.00048 0.99215 1.23719 0.98094 0.99991 0.96307 1.21127 0.94313 0.91866 0.96513 1.21361 0.99871 1.00800 0.93999 0.75076 0.87659 1.21353 1.22464 0.84026 0.83281 0.73373 0.87360 0.90120 0.82101 0.83906 0.84500 0.83269 0.89871 0.86761 0.82105 0.83066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.18 12.81 -148.98 -1.91 -1.73 16 2 C -0.10 0.38 2.79 71.24 0.20 0.58 16 3 Si 0.77 -3.97 29.85 68.60 2.05 -1.92 16 4 C -0.03 0.03 5.38 -19.86 -0.11 -0.08 16 5 C -0.12 0.07 9.69 22.27 0.22 0.28 16 6 C -0.03 0.01 9.52 22.27 0.21 0.22 16 7 C -0.68 0.54 5.95 22.27 0.13 0.67 16 8 S 2.72 1.05 5.71 -56.49 -0.32 0.73 16 9 O -0.99 -7.17 17.28 -128.00 -2.21 -9.38 16 10 O -0.98 -6.09 16.79 -128.00 -2.15 -8.24 16 11 N -1.09 7.88 5.73 -167.20 -0.96 6.92 16 12 C 0.11 -1.13 4.50 45.51 0.20 -0.92 16 13 H 0.12 -1.28 7.76 -2.39 -0.02 -1.30 16 14 C -0.13 1.35 7.33 31.12 0.23 1.58 16 15 C -0.08 0.84 3.81 -10.92 -0.04 0.79 16 16 H 0.11 -1.34 8.08 -2.39 -0.02 -1.36 16 17 C -0.04 0.26 5.29 -19.86 -0.11 0.15 16 18 C -0.12 0.85 8.63 22.27 0.19 1.04 16 19 C -0.08 0.26 9.40 22.27 0.21 0.46 16 20 C -0.20 -0.01 5.45 -19.87 -0.11 -0.12 16 21 C 0.50 1.60 3.36 71.24 0.24 1.84 16 22 F -0.18 -0.94 17.30 44.97 0.78 -0.16 16 23 F -0.18 -0.75 16.46 44.97 0.74 -0.01 16 24 F -0.18 -0.87 16.46 44.97 0.74 -0.13 16 25 C -0.08 0.15 9.40 22.27 0.21 0.36 16 26 C -0.12 0.64 9.71 22.27 0.22 0.86 16 27 C -0.14 1.70 7.27 31.21 0.23 1.93 16 28 C -0.02 0.05 9.52 22.27 0.21 0.26 16 29 C -0.14 0.37 8.67 22.27 0.19 0.56 16 30 H 0.40 -3.28 8.74 -74.06 -0.65 -3.92 16 31 H 0.11 -0.91 7.96 -2.39 -0.02 -0.92 16 32 H -0.29 0.15 7.11 99.48 0.71 0.85 16 33 H -0.30 -0.68 7.05 99.48 0.70 0.02 16 34 H 0.14 -0.39 8.06 -2.91 -0.02 -0.41 16 35 H 0.15 -0.38 7.62 -2.91 -0.02 -0.40 16 36 H 0.43 -4.49 8.81 -96.74 -0.85 -5.34 16 37 H 0.11 -1.25 7.73 -2.39 -0.02 -1.27 16 38 H 0.08 -0.75 8.14 -2.39 -0.02 -0.77 16 39 H 0.16 -2.05 6.65 -2.91 -0.02 -2.07 16 40 H 0.14 -0.77 7.61 -2.91 -0.02 -0.80 16 41 H 0.14 -0.43 7.60 -2.91 -0.02 -0.46 16 42 H 0.15 -1.34 8.05 -2.91 -0.02 -1.36 16 43 H 0.08 -0.95 8.14 -2.38 -0.02 -0.97 16 44 H 0.11 -1.66 6.31 -2.39 -0.02 -1.68 16 45 H 0.16 -1.01 7.61 -2.91 -0.02 -1.03 16 46 H 0.15 -0.98 4.87 -2.91 -0.01 -0.99 16 Total: 0.00 -26.50 407.98 -1.10 -27.60 By element: Atomic # 1 Polarization: -23.79 SS G_CDS: -0.39 Total: -24.18 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: 2.53 Total: 10.49 kcal Atomic # 7 Polarization: 7.88 SS G_CDS: -0.96 Total: 6.92 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -6.27 Total: -19.35 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 2.26 Total: -0.30 kcal Atomic # 14 Polarization: -3.97 SS G_CDS: 2.05 Total: -1.92 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -0.32 Total: 0.73 kcal Total: -26.50 -1.10 -27.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9705042_13421422.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.110 kcal (2) G-P(sol) polarization free energy of solvation -26.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds