Wall clock time and date at job start Mon Mar 8 2021 12:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86301 * 109.47192 * 2 1 4 4 C 1.50710 * 109.46928 * 119.99790 * 2 1 3 5 5 C 1.33385 * 125.20047 * 38.66580 * 4 2 1 6 6 S 1.76194 * 122.54405 * 359.97438 * 5 4 2 7 7 O 1.42097 * 106.40531 * 279.01419 * 6 5 4 8 8 O 1.42105 * 106.40090 * 51.93275 * 6 5 4 9 9 N 1.65602 * 107.22131 * 165.47340 * 6 5 4 10 10 C 1.46504 * 119.99751 * 66.48225 * 9 6 5 11 11 H 1.08998 * 112.84577 * 6.18368 * 10 9 6 12 12 C 1.53782 * 113.61070 * 137.37231 * 10 9 6 13 13 C 1.53790 * 87.07772 * 89.11802 * 12 10 9 14 14 H 1.09002 * 113.61459 * 270.79724 * 13 12 10 15 15 C 1.50697 * 113.61250 * 139.97988 * 13 12 10 16 16 C 1.38240 * 120.00019 * 299.72930 * 15 13 12 17 17 C 1.38229 * 119.99812 * 179.81233 * 16 15 13 18 18 C 1.38236 * 120.00186 * 0.41308 * 17 16 15 19 19 C 1.50701 * 119.99907 * 179.78880 * 18 17 16 20 20 F 1.39904 * 109.47289 * 270.02320 * 19 18 17 21 21 F 1.39897 * 109.47227 * 30.02828 * 19 18 17 22 22 F 1.39901 * 109.46963 * 150.02528 * 19 18 17 23 23 C 1.38235 * 119.99953 * 359.81723 * 18 17 16 24 24 C 1.38230 * 119.99735 * 359.97438 * 23 18 17 25 25 C 1.53780 * 113.61664 * 234.98005 * 10 9 6 26 26 C 1.38426 * 114.91908 * 179.97438 * 5 4 2 27 27 C 1.33391 * 114.91978 * 359.97438 * 26 5 4 28 28 S 1.75879 * 125.19886 * 218.35641 * 4 2 1 29 29 H 0.96698 * 114.00001 * 55.01294 * 1 2 3 30 30 H 1.08994 * 109.47179 * 239.99690 * 2 1 3 31 31 H 1.48494 * 109.99722 * 298.68214 * 3 2 1 32 32 H 1.48504 * 109.99656 * 59.99867 * 3 2 1 33 33 H 0.96996 * 119.99944 * 246.48725 * 9 6 5 34 34 H 1.08997 * 113.61511 * 203.66217 * 12 10 9 35 35 H 1.09002 * 113.61545 * 334.49087 * 12 10 9 36 36 H 1.07998 * 119.99980 * 359.97438 * 16 15 13 37 37 H 1.08006 * 119.99800 * 180.20552 * 17 16 15 38 38 H 1.08003 * 119.99715 * 179.97438 * 23 18 17 39 39 H 1.08004 * 119.99591 * 179.97438 * 24 23 18 40 40 H 1.09001 * 113.60902 * 25.44065 * 25 10 9 41 41 H 1.08994 * 113.61278 * 156.33401 * 25 10 9 42 42 H 1.07993 * 122.53994 * 179.97438 * 26 5 4 43 43 H 1.07999 * 125.20296 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2306 5 6 1.3852 -1.8044 1.7636 6 16 -0.0380 -2.5840 1.0772 7 8 -1.1612 -1.8439 1.5354 8 8 0.2447 -2.7950 -0.2993 9 7 -0.1548 -4.0854 1.7662 10 6 -0.4437 -4.2144 3.1966 11 1 -0.6656 -3.2587 3.6715 12 6 -1.4667 -5.3158 3.5215 13 6 -0.2755 -6.2835 3.6204 14 1 -0.0154 -6.7542 2.6723 15 6 -0.3932 -7.2720 4.7517 16 6 -0.4813 -6.8226 6.0560 17 6 -0.5932 -7.7293 7.0934 18 6 -0.6084 -9.0857 6.8273 19 6 -0.7256 -10.0742 7.9587 20 9 0.5524 -10.4152 8.4144 21 9 -1.4564 -9.5011 9.0049 22 9 -1.3818 -11.2243 7.5069 23 6 -0.5155 -9.5353 5.5234 24 6 -0.4080 -8.6284 4.4857 25 6 0.5916 -5.0565 3.9607 26 6 2.0214 -2.2809 2.8969 27 6 3.0845 -1.5742 3.2838 28 16 3.3318 -0.2281 2.1790 29 1 -0.3933 0.5065 -0.7237 30 1 1.7923 -0.5138 -0.8899 31 1 1.5879 2.4585 -1.2242 32 1 1.5615 2.4678 1.2085 33 1 -0.0319 -4.8793 1.2226 34 1 -1.9858 -5.1642 4.4678 35 1 -2.1447 -5.5388 2.6976 36 1 -0.4653 -5.7630 6.2643 37 1 -0.6654 -7.3780 8.1122 38 1 -0.5270 -10.5950 5.3155 39 1 -0.3350 -8.9797 3.4670 40 1 1.5750 -5.0710 3.4908 41 1 0.6341 -4.8340 5.0269 42 1 1.6828 -3.1584 3.4275 43 1 3.7013 -1.7967 4.1419 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_9705042_14772022.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:33:25 Heat of formation + Delta-G solvation = -153.864953 kcal Electronic energy + Delta-G solvation = -35549.418719 eV Core-core repulsion = 30173.372397 eV Total energy + Delta-G solvation = -5376.046323 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 420.051 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -51.21866 -48.74496 -48.69454 -41.34310 -39.59510 -39.40624 -38.16399 -37.79332 -36.82773 -34.57927 -32.40457 -32.02581 -31.89785 -27.78436 -27.52840 -26.75348 -25.07293 -24.26590 -23.97777 -22.49958 -21.68849 -20.77121 -20.08560 -19.56888 -19.50360 -19.38850 -19.02170 -18.65514 -18.19143 -17.65444 -17.09321 -16.91623 -16.54711 -16.33519 -15.98167 -15.85379 -15.53441 -15.49084 -15.33293 -15.15566 -15.09343 -14.94200 -14.85968 -14.78986 -14.59503 -14.46294 -14.35250 -14.15525 -14.02784 -13.75183 -13.67974 -13.30214 -13.27672 -13.14782 -13.06601 -12.94946 -12.59938 -12.57725 -12.33917 -12.26349 -11.82900 -11.78981 -11.67670 -11.20866 -11.03496 -10.51847 -10.04785 -10.03309 -9.89803 -9.66773 -5.20376 -0.69545 -0.46436 -0.10234 0.30325 0.35686 0.68836 1.01603 1.21099 1.49481 1.63760 1.78936 1.97215 2.44096 2.70733 2.72057 2.98318 3.01533 3.36952 3.41071 3.42447 3.56040 3.65554 3.67814 3.86094 3.91196 3.94589 4.07418 4.19188 4.22165 4.24261 4.33986 4.35035 4.41349 4.65252 4.70085 4.76258 4.83723 4.90161 4.91875 4.99780 5.06612 5.10598 5.18692 5.21046 5.22006 5.42806 5.60267 5.80739 6.03523 6.29055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.099 4.099 3 Si 0.758 3.242 4 C -0.088 4.088 5 C -0.675 4.675 6 S 2.733 3.267 7 O -0.977 6.977 8 O -0.984 6.984 9 N -1.092 6.092 10 C 0.109 3.891 11 H 0.109 0.891 12 C -0.136 4.136 13 C -0.073 4.073 14 H 0.115 0.885 15 C -0.036 4.036 16 C -0.118 4.118 17 C -0.077 4.077 18 C -0.204 4.204 19 C 0.505 3.495 20 F -0.184 7.184 21 F -0.182 7.182 22 F -0.184 7.184 23 C -0.079 4.079 24 C -0.121 4.121 25 C -0.148 4.148 26 C -0.105 4.105 27 C -0.207 4.207 28 S 0.189 5.811 29 H 0.410 0.590 30 H 0.120 0.880 31 H -0.246 1.246 32 H -0.276 1.276 33 H 0.429 0.571 34 H 0.107 0.893 35 H 0.078 0.922 36 H 0.159 0.841 37 H 0.143 0.857 38 H 0.139 0.861 39 H 0.152 0.848 40 H 0.095 0.905 41 H 0.119 0.881 42 H 0.178 0.822 43 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.079 1.646 -0.469 6.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.373 6.373 2 C -0.208 4.208 3 Si 0.656 3.344 4 C -0.208 4.208 5 C -0.776 4.776 6 S 2.820 3.180 7 O -0.967 6.967 8 O -0.974 6.974 9 N -0.854 5.854 10 C 0.002 3.998 11 H 0.127 0.873 12 C -0.175 4.175 13 C -0.091 4.091 14 H 0.133 0.867 15 C -0.036 4.036 16 C -0.136 4.136 17 C -0.095 4.095 18 C -0.205 4.205 19 C 0.451 3.549 20 F -0.166 7.166 21 F -0.164 7.164 22 F -0.165 7.165 23 C -0.097 4.097 24 C -0.139 4.139 25 C -0.187 4.187 26 C -0.133 4.133 27 C -0.343 4.343 28 S 0.453 5.547 29 H 0.264 0.736 30 H 0.137 0.863 31 H -0.170 1.170 32 H -0.202 1.202 33 H 0.266 0.734 34 H 0.125 0.875 35 H 0.097 0.903 36 H 0.177 0.823 37 H 0.160 0.840 38 H 0.157 0.843 39 H 0.169 0.831 40 H 0.114 0.886 41 H 0.137 0.863 42 H 0.195 0.805 43 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 6.450 3.798 -0.515 7.503 hybrid contribution -1.732 -2.026 0.112 2.668 sum 4.718 1.772 -0.404 5.056 Atomic orbital electron populations 1.86410 1.17543 1.76474 1.56910 1.25019 0.85005 1.13905 0.96854 0.94345 0.89278 0.70657 0.80143 1.24030 1.00335 0.96978 0.99486 1.29766 1.25638 1.10752 1.11479 1.00662 0.73203 0.71984 0.72109 1.93546 1.49424 1.71396 1.82296 1.93516 1.86016 1.85528 1.32334 1.55180 1.87430 1.24662 1.18086 1.21923 0.97989 1.00594 0.79324 0.87312 1.23488 0.96264 0.93926 1.03811 1.21726 0.97689 0.92784 0.96947 0.86662 1.20146 0.94602 0.94072 0.94811 1.21294 1.00005 1.01066 0.91235 1.21148 0.95999 0.90859 1.01460 1.20028 1.13083 0.94290 0.93105 1.18557 0.73472 0.80307 0.82529 1.93217 1.40019 1.93052 1.90291 1.93181 1.77937 1.84446 1.60804 1.93181 1.81506 1.52858 1.88948 1.21127 0.96132 1.01511 0.90908 1.21333 1.00169 0.92436 0.99923 1.23854 0.98592 0.93718 1.02560 1.20177 0.95884 1.02526 0.94708 1.26335 1.03343 0.99379 1.05205 1.84063 1.23755 1.28373 1.18516 0.73644 0.86278 1.16999 1.20235 0.73397 0.87479 0.90303 0.82311 0.83968 0.84323 0.83074 0.88630 0.86298 0.80525 0.77685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -3.48 9.60 -124.86 -1.20 -4.68 16 2 C -0.10 -0.22 2.39 71.24 0.17 -0.05 16 3 Si 0.76 -1.51 31.13 68.60 2.14 0.62 16 4 C -0.09 -0.31 5.77 24.59 0.14 -0.16 16 5 C -0.68 -2.44 5.72 21.22 0.12 -2.32 16 6 S 2.73 16.37 4.16 -56.49 -0.24 16.14 16 7 O -0.98 -12.88 16.44 -120.53 -1.98 -14.86 16 8 O -0.98 -10.78 17.05 -122.88 -2.09 -12.88 16 9 N -1.09 3.40 5.50 -167.19 -0.92 2.48 16 10 C 0.11 -0.69 3.11 45.52 0.14 -0.55 16 11 H 0.11 -0.60 7.79 -2.39 -0.02 -0.62 16 12 C -0.14 1.00 7.35 31.12 0.23 1.23 16 13 C -0.07 0.68 3.79 -10.92 -0.04 0.64 16 14 H 0.12 -1.28 8.00 -2.39 -0.02 -1.29 16 15 C -0.04 0.23 5.29 -19.87 -0.11 0.12 16 16 C -0.12 0.72 8.63 22.27 0.19 0.91 16 17 C -0.08 0.18 9.40 22.27 0.21 0.39 16 18 C -0.20 -0.15 5.45 -19.87 -0.11 -0.26 16 19 C 0.51 1.90 3.36 71.24 0.24 2.14 16 20 F -0.18 -1.03 17.30 44.97 0.78 -0.25 16 21 F -0.18 -0.88 16.46 44.97 0.74 -0.14 16 22 F -0.18 -0.96 16.46 44.97 0.74 -0.22 16 23 C -0.08 0.11 9.40 22.27 0.21 0.32 16 24 C -0.12 0.56 9.71 22.27 0.22 0.78 16 25 C -0.15 1.61 5.78 31.21 0.18 1.80 16 26 C -0.11 0.24 9.51 21.22 0.20 0.44 16 27 C -0.21 0.94 11.23 66.72 0.75 1.69 16 28 S 0.19 -0.47 20.89 -56.49 -1.18 -1.65 16 29 H 0.41 -0.97 8.62 -74.06 -0.64 -1.61 16 30 H 0.12 -0.08 7.96 -2.39 -0.02 -0.10 16 31 H -0.25 0.06 7.11 99.48 0.71 0.76 16 32 H -0.28 -1.25 7.11 99.48 0.71 -0.55 16 33 H 0.43 -3.03 8.71 -96.75 -0.84 -3.87 16 34 H 0.11 -0.92 7.73 -2.39 -0.02 -0.94 16 35 H 0.08 -0.47 8.14 -2.39 -0.02 -0.49 16 36 H 0.16 -1.78 6.64 -2.91 -0.02 -1.80 16 37 H 0.14 -0.61 7.61 -2.91 -0.02 -0.64 16 38 H 0.14 -0.40 7.60 -2.91 -0.02 -0.42 16 39 H 0.15 -1.30 8.05 -2.91 -0.02 -1.32 16 40 H 0.10 -1.16 7.33 -2.39 -0.02 -1.18 16 41 H 0.12 -1.65 6.30 -2.39 -0.02 -1.66 16 42 H 0.18 -1.42 3.79 -2.91 -0.01 -1.43 16 43 H 0.21 -2.30 8.06 -2.91 -0.02 -2.32 16 Total: 0.00 -27.01 387.42 -0.78 -27.79 By element: Atomic # 1 Polarization: -19.14 SS G_CDS: -0.32 Total: -19.46 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: 2.75 Total: 7.11 kcal Atomic # 7 Polarization: 3.40 SS G_CDS: -0.92 Total: 2.48 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -5.27 Total: -32.42 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 2.26 Total: -0.61 kcal Atomic # 14 Polarization: -1.51 SS G_CDS: 2.14 Total: 0.62 kcal Atomic # 16 Polarization: 15.90 SS G_CDS: -1.42 Total: 14.48 kcal Total: -27.01 -0.78 -27.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9705042_14772022.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.073 kcal (2) G-P(sol) polarization free energy of solvation -27.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds