Wall clock time and date at job start Mon Mar 8 2021 12:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86301 * 109.47256 * 2 1 4 4 C 1.50699 * 109.46964 * 239.99985 * 2 1 3 5 5 C 1.38237 * 119.99733 * 119.72601 * 4 2 1 6 6 C 1.38241 * 119.99657 * 179.76625 * 5 4 2 7 7 C 1.38235 * 119.99943 * 0.48832 * 6 5 4 8 8 S 1.76203 * 120.00097 * 179.76909 * 7 6 5 9 9 O 1.42103 * 106.40167 * 23.55718 * 8 7 6 10 10 O 1.42095 * 106.40452 * 156.47878 * 8 7 6 11 11 N 1.65596 * 107.21721 * 270.02136 * 8 7 6 12 12 C 1.46506 * 120.00211 * 64.99692 * 11 8 7 13 13 H 1.08995 * 112.84821 * 13.80450 * 12 11 8 14 14 C 1.53779 * 113.61375 * 145.00030 * 12 11 8 15 15 C 1.53788 * 87.07988 * 89.11611 * 14 12 11 16 16 H 1.08995 * 113.61402 * 270.88054 * 15 14 12 17 17 C 1.50698 * 113.61108 * 139.98047 * 15 14 12 18 18 C 1.38439 * 120.01295 * 120.00043 * 17 15 14 19 19 F 1.35100 * 120.02425 * 0.02562 * 18 17 15 20 20 C 1.38479 * 119.94861 * 179.97438 * 18 17 15 21 21 C 1.38174 * 119.97748 * 0.02562 * 20 18 17 22 22 C 1.38268 * 120.02212 * 359.97438 * 21 20 18 23 23 C 1.38219 * 120.05438 * 359.73212 * 22 21 20 24 24 C 1.53774 * 87.08018 * 25.43185 * 15 14 12 25 25 C 1.38234 * 120.00000 * 359.78728 * 7 6 5 26 26 C 1.38231 * 120.00104 * 359.95888 * 25 7 6 27 27 H 0.96708 * 113.99549 * 300.00274 * 1 2 3 28 28 H 1.09002 * 109.47259 * 120.00198 * 2 1 3 29 29 H 1.48498 * 110.00005 * 300.00280 * 3 2 1 30 30 H 1.48501 * 110.00049 * 61.31942 * 3 2 1 31 31 H 1.07997 * 120.00523 * 0.02562 * 5 4 2 32 32 H 1.07998 * 120.00132 * 180.25021 * 6 5 4 33 33 H 0.97001 * 120.00140 * 244.99936 * 11 8 7 34 34 H 1.08999 * 113.61383 * 203.66169 * 14 12 11 35 35 H 1.08996 * 113.61519 * 334.48688 * 14 12 11 36 36 H 1.08008 * 120.01293 * 179.97438 * 20 18 17 37 37 H 1.07999 * 119.98915 * 179.97438 * 21 20 18 38 38 H 1.08000 * 119.97412 * 179.97438 * 22 21 20 39 39 H 1.07995 * 119.99156 * 180.27180 * 23 22 21 40 40 H 1.08997 * 113.61527 * 220.01825 * 24 15 14 41 41 H 1.08998 * 113.61770 * 89.11634 * 24 15 14 42 42 H 1.08001 * 120.00109 * 179.97438 * 25 7 6 43 43 H 1.07999 * 120.00122 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7213 -0.0369 -2.1432 6 6 3.1861 -0.6900 -3.2695 7 6 2.8524 -2.0136 -3.4881 8 16 3.4398 -2.8442 -4.9267 9 8 4.6072 -2.1491 -5.3429 10 8 3.4289 -4.2320 -4.6214 11 7 2.3117 -2.6186 -6.1179 12 6 2.0545 -1.2734 -6.6379 13 1 2.8179 -0.5530 -6.3443 14 6 1.7267 -1.2459 -8.1401 15 6 0.2529 -1.4315 -7.7417 16 1 -0.0482 -2.4756 -7.6566 17 6 -0.7036 -0.6106 -8.5676 18 6 -1.6886 -1.2364 -9.3123 19 9 -1.7933 -2.5833 -9.2987 20 6 -2.5672 -0.4807 -10.0704 21 6 -2.4596 0.8967 -10.0831 22 6 -1.4754 1.5207 -9.3389 23 6 -0.6017 0.7678 -8.5771 24 6 0.6170 -0.7837 -6.3954 25 6 2.0577 -2.6853 -2.5782 26 6 1.5973 -2.0338 -1.4493 27 1 -0.3933 0.4418 0.7651 28 1 1.7923 -0.5139 0.8900 29 1 1.5615 2.4679 -1.2084 30 1 1.5879 2.4586 1.2242 31 1 2.9790 0.9982 -1.9744 32 1 3.8066 -0.1651 -3.9807 33 1 1.8212 -3.3772 -6.4713 34 1 1.9331 -0.2865 -8.6146 35 1 2.1405 -2.0893 -8.6928 36 1 -3.3359 -0.9679 -10.6521 37 1 -3.1445 1.4863 -10.6746 38 1 -1.3917 2.5974 -9.3498 39 1 0.1639 1.2565 -7.9928 40 1 0.1338 -1.2547 -5.5394 41 1 0.5202 0.3020 -6.3929 42 1 1.7967 -3.7193 -2.7491 43 1 0.9767 -2.5588 -0.7382 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_9705098_13421422.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:33:49 Heat of formation + Delta-G solvation = -62.407829 kcal Electronic energy + Delta-G solvation = -30164.131505 eV Core-core repulsion = 25797.344384 eV Total energy + Delta-G solvation = -4366.787120 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.098 amu Computer time = 2.59 seconds Orbital eigenvalues (eV) -49.83088 -41.22229 -40.66862 -39.23854 -38.21324 -37.91378 -36.85216 -34.44344 -33.20666 -32.23916 -31.66221 -31.42875 -27.32257 -26.83698 -26.29486 -24.14269 -23.85287 -22.87920 -22.82986 -20.93704 -20.31899 -19.32590 -18.77033 -18.72722 -18.38752 -17.43952 -17.29045 -17.06721 -16.93243 -16.78980 -16.55739 -15.93705 -15.84282 -15.51910 -15.41263 -15.16392 -15.03305 -14.68964 -14.42194 -14.36267 -14.07712 -14.02814 -13.94198 -13.66750 -13.52370 -13.25011 -13.09396 -13.05101 -12.89322 -12.85144 -12.48052 -12.40461 -12.04110 -11.94946 -11.93145 -11.77194 -11.34369 -10.81847 -10.62927 -10.34610 -10.16162 -9.95279 -9.61277 -5.11612 -0.71656 -0.36070 0.13086 0.16898 0.18042 1.07450 1.44292 1.78947 1.84435 2.27941 2.53079 2.74164 3.05666 3.18889 3.25213 3.34075 3.46559 3.50153 3.56542 3.68561 3.72098 3.75184 3.80527 3.95756 4.00542 4.04514 4.09823 4.17226 4.21760 4.29664 4.33951 4.53340 4.56045 4.58467 4.76415 4.78100 4.83498 4.85904 4.90008 4.91040 4.95423 5.02565 5.17449 5.21091 5.22760 5.37488 5.41149 5.65432 5.82759 5.87723 6.22312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.534 6.534 2 C -0.087 4.087 3 Si 0.684 3.316 4 C -0.016 4.016 5 C -0.136 4.136 6 C -0.014 4.014 7 C -0.674 4.674 8 S 2.696 3.304 9 O -0.950 6.950 10 O -0.954 6.954 11 N -1.098 6.098 12 C 0.124 3.876 13 H 0.110 0.890 14 C -0.131 4.131 15 C -0.076 4.076 16 H 0.103 0.897 17 C -0.104 4.104 18 C 0.100 3.900 19 F -0.138 7.138 20 C -0.152 4.152 21 C -0.095 4.095 22 C -0.127 4.127 23 C -0.091 4.091 24 C -0.147 4.147 25 C -0.016 4.016 26 C -0.112 4.112 27 H 0.384 0.616 28 H 0.084 0.916 29 H -0.252 1.252 30 H -0.257 1.257 31 H 0.137 0.863 32 H 0.146 0.854 33 H 0.421 0.579 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.130 0.870 39 H 0.133 0.867 40 H 0.080 0.920 41 H 0.098 0.902 42 H 0.143 0.857 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.200 5.099 1.458 5.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.342 6.342 2 C -0.196 4.196 3 Si 0.585 3.415 4 C -0.016 4.016 5 C -0.154 4.154 6 C -0.033 4.033 7 C -0.761 4.761 8 S 2.786 3.214 9 O -0.940 6.940 10 O -0.944 6.944 11 N -0.856 5.856 12 C 0.016 3.984 13 H 0.128 0.872 14 C -0.170 4.170 15 C -0.094 4.094 16 H 0.121 0.879 17 C -0.105 4.105 18 C 0.081 3.919 19 F -0.117 7.117 20 C -0.171 4.171 21 C -0.113 4.113 22 C -0.145 4.145 23 C -0.109 4.109 24 C -0.186 4.186 25 C -0.035 4.035 26 C -0.131 4.131 27 H 0.232 0.768 28 H 0.102 0.898 29 H -0.176 1.176 30 H -0.182 1.182 31 H 0.155 0.845 32 H 0.163 0.837 33 H 0.256 0.744 34 H 0.118 0.882 35 H 0.101 0.899 36 H 0.153 0.847 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.151 0.849 40 H 0.099 0.901 41 H 0.117 0.883 42 H 0.161 0.839 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.433 5.251 0.911 5.348 hybrid contribution -2.102 -0.348 0.860 2.298 sum -2.535 4.904 1.772 5.797 Atomic orbital electron populations 1.86573 1.17235 1.80346 1.50007 1.24944 0.84979 1.11496 0.98195 0.94941 0.91663 0.74165 0.80765 1.19621 0.94102 0.94077 0.93800 1.21082 0.99665 1.00022 0.94650 1.20864 0.94124 0.91851 0.96493 1.30961 1.15539 1.07361 1.22220 1.01901 0.73230 0.73406 0.72900 1.93616 1.44112 1.75365 1.80930 1.93623 1.86179 1.30329 1.84252 1.55369 1.61027 1.14689 1.54513 1.21672 0.97607 0.83072 0.96045 0.87181 1.23406 0.94110 1.04064 0.95415 1.21509 0.93453 0.99479 0.94984 0.87870 1.19748 0.96858 0.94602 0.99324 1.17601 0.97509 0.77075 0.99727 1.91496 1.95581 1.29384 1.95192 1.21211 1.00206 0.94753 1.00899 1.21069 0.98115 0.93575 0.98503 1.21248 0.95551 1.00531 0.97174 1.20925 0.99199 0.92145 0.98595 1.23637 0.96011 1.01702 0.97285 1.20971 0.91115 0.99483 0.91966 1.21151 0.99753 0.94181 0.98042 0.76793 0.89821 1.17610 1.18238 0.84535 0.83654 0.74393 0.88169 0.89886 0.84689 0.84951 0.85191 0.84874 0.90145 0.88327 0.83906 0.84677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.07 12.74 -35.23 -0.45 -0.38 16 2 C -0.09 0.11 2.81 36.01 0.10 0.21 16 3 Si 0.68 -1.40 29.79 -169.99 -5.06 -6.47 16 4 C -0.02 0.00 5.42 -104.62 -0.57 -0.57 16 5 C -0.14 0.08 8.67 -39.58 -0.34 -0.26 16 6 C -0.01 0.01 9.52 -39.58 -0.38 -0.37 16 7 C -0.67 -0.31 5.95 -39.58 -0.24 -0.54 16 8 S 2.70 2.92 5.71 -107.50 -0.61 2.30 16 9 O -0.95 -3.39 16.80 -57.17 -0.96 -4.35 16 10 O -0.95 -3.85 17.28 -57.17 -0.99 -4.83 16 11 N -1.10 1.58 5.73 -4.20 -0.02 1.56 16 12 C 0.12 -0.26 4.51 -67.12 -0.30 -0.57 16 13 H 0.11 -0.34 7.77 -51.93 -0.40 -0.75 16 14 C -0.13 0.27 7.33 -25.92 -0.19 0.08 16 15 C -0.08 0.09 3.72 -90.96 -0.34 -0.25 16 16 H 0.10 -0.08 7.41 -51.93 -0.39 -0.46 16 17 C -0.10 -0.01 5.29 -104.55 -0.55 -0.56 16 18 C 0.10 0.15 7.25 -39.42 -0.29 -0.13 16 19 F -0.14 -0.38 16.37 2.25 0.04 -0.35 16 20 C -0.15 -0.07 10.03 -39.52 -0.40 -0.46 16 21 C -0.09 0.07 10.04 -39.59 -0.40 -0.33 16 22 C -0.13 0.15 10.04 -39.58 -0.40 -0.24 16 23 C -0.09 0.11 8.62 -39.59 -0.34 -0.24 16 24 C -0.15 0.33 7.25 -25.92 -0.19 0.14 16 25 C -0.02 -0.01 9.52 -39.59 -0.38 -0.39 16 26 C -0.11 -0.06 9.61 -39.59 -0.38 -0.44 16 27 H 0.38 -1.53 8.74 45.56 0.40 -1.13 16 28 H 0.08 -0.24 7.96 -51.93 -0.41 -0.65 16 29 H -0.25 -0.19 7.11 56.52 0.40 0.21 16 30 H -0.26 -0.01 7.11 56.52 0.40 0.39 16 31 H 0.14 -0.38 4.88 -52.49 -0.26 -0.63 16 32 H 0.15 -0.33 7.62 -52.49 -0.40 -0.73 16 33 H 0.42 -1.15 8.78 -34.47 -0.30 -1.45 16 34 H 0.10 -0.29 7.73 -51.93 -0.40 -0.69 16 35 H 0.08 -0.14 8.14 -51.93 -0.42 -0.57 16 36 H 0.14 -0.11 8.06 -52.48 -0.42 -0.53 16 37 H 0.13 -0.36 8.06 -52.49 -0.42 -0.78 16 38 H 0.13 -0.40 8.06 -52.49 -0.42 -0.83 16 39 H 0.13 -0.44 6.64 -52.49 -0.35 -0.78 16 40 H 0.08 -0.13 8.14 -51.93 -0.42 -0.55 16 41 H 0.10 -0.32 6.30 -51.93 -0.33 -0.65 16 42 H 0.14 -0.09 7.62 -52.49 -0.40 -0.49 16 43 H 0.14 -0.07 8.06 -52.49 -0.42 -0.50 16 LS Contribution 374.21 15.07 5.64 5.64 Total: 0.00 -10.40 374.21 -12.97 -23.36 By element: Atomic # 1 Polarization: -6.59 SS G_CDS: -4.97 Total: -11.57 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -5.57 Total: -4.93 kcal Atomic # 7 Polarization: 1.58 SS G_CDS: -0.02 Total: 1.56 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: -2.40 Total: -9.56 kcal Atomic # 9 Polarization: -0.38 SS G_CDS: 0.04 Total: -0.35 kcal Atomic # 14 Polarization: -1.40 SS G_CDS: -5.06 Total: -6.47 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -0.61 Total: 2.30 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -10.40 -12.97 -23.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9705098_13421422.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.043 kcal (2) G-P(sol) polarization free energy of solvation -10.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.59 seconds