Wall clock time and date at job start Mon Mar 8 2021 12:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86301 * 109.47256 * 2 1 4 4 C 1.50699 * 109.46964 * 239.99985 * 2 1 3 5 5 C 1.38237 * 119.99733 * 119.72601 * 4 2 1 6 6 C 1.38241 * 119.99657 * 179.76625 * 5 4 2 7 7 C 1.38235 * 119.99943 * 0.48832 * 6 5 4 8 8 S 1.76203 * 120.00097 * 179.76909 * 7 6 5 9 9 O 1.42103 * 106.40167 * 23.55718 * 8 7 6 10 10 O 1.42095 * 106.40452 * 156.47878 * 8 7 6 11 11 N 1.65596 * 107.21721 * 270.02136 * 8 7 6 12 12 C 1.46506 * 120.00211 * 64.99692 * 11 8 7 13 13 H 1.08995 * 112.84821 * 13.80450 * 12 11 8 14 14 C 1.53779 * 113.61375 * 145.00030 * 12 11 8 15 15 C 1.53788 * 87.07988 * 89.11611 * 14 12 11 16 16 H 1.08995 * 113.61402 * 270.88054 * 15 14 12 17 17 C 1.50698 * 113.61108 * 139.98047 * 15 14 12 18 18 C 1.38439 * 120.01295 * 120.00043 * 17 15 14 19 19 F 1.35100 * 120.02425 * 0.02562 * 18 17 15 20 20 C 1.38479 * 119.94861 * 179.97438 * 18 17 15 21 21 C 1.38174 * 119.97748 * 0.02562 * 20 18 17 22 22 C 1.38268 * 120.02212 * 359.97438 * 21 20 18 23 23 C 1.38219 * 120.05438 * 359.73212 * 22 21 20 24 24 C 1.53774 * 87.08018 * 25.43185 * 15 14 12 25 25 C 1.38234 * 120.00000 * 359.78728 * 7 6 5 26 26 C 1.38231 * 120.00104 * 359.95888 * 25 7 6 27 27 H 0.96708 * 113.99549 * 300.00274 * 1 2 3 28 28 H 1.09002 * 109.47259 * 120.00198 * 2 1 3 29 29 H 1.48498 * 110.00005 * 300.00280 * 3 2 1 30 30 H 1.48501 * 110.00049 * 61.31942 * 3 2 1 31 31 H 1.07997 * 120.00523 * 0.02562 * 5 4 2 32 32 H 1.07998 * 120.00132 * 180.25021 * 6 5 4 33 33 H 0.97001 * 120.00140 * 244.99936 * 11 8 7 34 34 H 1.08999 * 113.61383 * 203.66169 * 14 12 11 35 35 H 1.08996 * 113.61519 * 334.48688 * 14 12 11 36 36 H 1.08008 * 120.01293 * 179.97438 * 20 18 17 37 37 H 1.07999 * 119.98915 * 179.97438 * 21 20 18 38 38 H 1.08000 * 119.97412 * 179.97438 * 22 21 20 39 39 H 1.07995 * 119.99156 * 180.27180 * 23 22 21 40 40 H 1.08997 * 113.61527 * 220.01825 * 24 15 14 41 41 H 1.08998 * 113.61770 * 89.11634 * 24 15 14 42 42 H 1.08001 * 120.00109 * 179.97438 * 25 7 6 43 43 H 1.07999 * 120.00122 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7213 -0.0369 -2.1432 6 6 3.1861 -0.6900 -3.2695 7 6 2.8524 -2.0136 -3.4881 8 16 3.4398 -2.8442 -4.9267 9 8 4.6072 -2.1491 -5.3429 10 8 3.4289 -4.2320 -4.6214 11 7 2.3117 -2.6186 -6.1179 12 6 2.0545 -1.2734 -6.6379 13 1 2.8179 -0.5530 -6.3443 14 6 1.7267 -1.2459 -8.1401 15 6 0.2529 -1.4315 -7.7417 16 1 -0.0482 -2.4756 -7.6566 17 6 -0.7036 -0.6106 -8.5676 18 6 -1.6886 -1.2364 -9.3123 19 9 -1.7933 -2.5833 -9.2987 20 6 -2.5672 -0.4807 -10.0704 21 6 -2.4596 0.8967 -10.0831 22 6 -1.4754 1.5207 -9.3389 23 6 -0.6017 0.7678 -8.5771 24 6 0.6170 -0.7837 -6.3954 25 6 2.0577 -2.6853 -2.5782 26 6 1.5973 -2.0338 -1.4493 27 1 -0.3933 0.4418 0.7651 28 1 1.7923 -0.5139 0.8900 29 1 1.5615 2.4679 -1.2084 30 1 1.5879 2.4586 1.2242 31 1 2.9790 0.9982 -1.9744 32 1 3.8066 -0.1651 -3.9807 33 1 1.8212 -3.3772 -6.4713 34 1 1.9331 -0.2865 -8.6146 35 1 2.1405 -2.0893 -8.6928 36 1 -3.3359 -0.9679 -10.6521 37 1 -3.1445 1.4863 -10.6746 38 1 -1.3917 2.5974 -9.3498 39 1 0.1639 1.2565 -7.9928 40 1 0.1338 -1.2547 -5.5394 41 1 0.5202 0.3020 -6.3929 42 1 1.7967 -3.7193 -2.7491 43 1 0.9767 -2.5588 -0.7382 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_9705098_13421422.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:33:48 Heat of formation + Delta-G solvation = -62.680490 kcal Electronic energy + Delta-G solvation = -30164.143328 eV Core-core repulsion = 25797.344384 eV Total energy + Delta-G solvation = -4366.798944 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.098 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -49.93049 -41.10632 -40.61363 -39.14284 -38.40006 -37.82902 -37.04988 -34.37406 -33.16617 -32.19437 -31.57876 -31.35496 -27.25138 -26.67067 -26.18647 -24.09705 -23.78636 -22.82988 -22.75387 -20.93037 -20.23784 -19.31407 -18.76189 -18.64449 -18.43814 -17.41590 -17.29676 -17.00672 -16.84593 -16.71842 -16.64928 -15.96411 -15.80851 -15.41922 -15.36182 -15.07302 -14.96179 -14.63566 -14.34880 -14.32370 -14.06276 -13.99263 -13.90157 -13.60310 -13.46615 -13.31494 -13.24643 -13.15726 -12.88616 -12.78863 -12.44062 -12.30648 -11.97427 -11.90705 -11.82654 -11.73255 -11.21602 -10.73451 -10.52442 -10.28573 -10.12714 -9.87899 -9.57380 -4.94964 -0.76664 -0.36971 0.18301 0.20605 0.24830 1.22294 1.57612 1.84963 1.91311 2.30340 2.61023 2.69057 3.18475 3.21374 3.28076 3.44965 3.58390 3.62394 3.66009 3.76846 3.83797 3.84700 3.93463 4.08772 4.13708 4.18414 4.20743 4.29504 4.35814 4.38887 4.40318 4.60879 4.68232 4.78868 4.84786 4.88590 4.94964 4.96567 4.99009 5.00803 5.06059 5.11158 5.26178 5.26843 5.35293 5.48046 5.51395 5.70284 5.94671 5.96451 6.50153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.097 4.097 3 Si 0.763 3.237 4 C -0.026 4.026 5 C -0.140 4.140 6 C -0.018 4.018 7 C -0.677 4.677 8 S 2.714 3.286 9 O -0.976 6.976 10 O -0.988 6.988 11 N -1.091 6.091 12 C 0.120 3.880 13 H 0.125 0.875 14 C -0.128 4.128 15 C -0.081 4.081 16 H 0.091 0.909 17 C -0.110 4.110 18 C 0.067 3.933 19 F -0.154 7.154 20 C -0.165 4.165 21 C -0.101 4.101 22 C -0.127 4.127 23 C -0.093 4.093 24 C -0.140 4.140 25 C -0.028 4.028 26 C -0.125 4.125 27 H 0.398 0.602 28 H 0.102 0.898 29 H -0.288 1.288 30 H -0.286 1.286 31 H 0.158 0.842 32 H 0.165 0.835 33 H 0.426 0.574 34 H 0.114 0.886 35 H 0.077 0.923 36 H 0.138 0.862 37 H 0.151 0.849 38 H 0.153 0.847 39 H 0.158 0.842 40 H 0.073 0.927 41 H 0.115 0.885 42 H 0.146 0.854 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.810 7.025 1.843 7.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.205 4.205 3 Si 0.667 3.333 4 C -0.027 4.027 5 C -0.158 4.158 6 C -0.037 4.037 7 C -0.765 4.765 8 S 2.806 3.194 9 O -0.966 6.966 10 O -0.979 6.979 11 N -0.851 5.851 12 C 0.013 3.987 13 H 0.143 0.857 14 C -0.167 4.167 15 C -0.099 4.099 16 H 0.109 0.891 17 C -0.111 4.111 18 C 0.048 3.952 19 F -0.133 7.133 20 C -0.184 4.184 21 C -0.119 4.119 22 C -0.145 4.145 23 C -0.111 4.111 24 C -0.179 4.179 25 C -0.047 4.047 26 C -0.143 4.143 27 H 0.249 0.751 28 H 0.119 0.881 29 H -0.215 1.215 30 H -0.213 1.213 31 H 0.175 0.825 32 H 0.182 0.818 33 H 0.263 0.737 34 H 0.132 0.868 35 H 0.096 0.904 36 H 0.156 0.844 37 H 0.169 0.831 38 H 0.171 0.829 39 H 0.175 0.825 40 H 0.092 0.908 41 H 0.133 0.867 42 H 0.164 0.836 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.038 7.146 1.293 7.263 hybrid contribution -2.308 -0.884 0.747 2.582 sum -2.347 6.263 2.040 6.992 Atomic orbital electron populations 1.86529 1.17919 1.80876 1.51236 1.25167 0.84611 1.12388 0.98323 0.94069 0.90376 0.71744 0.77134 1.19903 0.94141 0.94108 0.94500 1.21351 0.99218 1.00945 0.94264 1.21165 0.94002 0.91543 0.97002 1.30801 1.16033 1.07859 1.21833 1.01088 0.73014 0.72350 0.72988 1.93576 1.45850 1.75604 1.81537 1.93571 1.86822 1.32555 1.84912 1.55155 1.60550 1.15518 1.53917 1.21839 0.98200 0.82704 0.96006 0.85699 1.23436 0.93203 1.04600 0.95424 1.21526 0.93783 0.98924 0.95717 0.89072 1.19949 0.96595 0.95406 0.99101 1.17979 0.99077 0.76676 1.01459 1.91445 1.95814 1.30543 1.95470 1.21401 1.00352 0.95561 1.01097 1.21359 0.98683 0.93132 0.98751 1.21605 0.94858 1.01769 0.96290 1.21240 0.99683 0.91554 0.98603 1.23643 0.95537 1.02518 0.96238 1.21105 0.91455 0.99877 0.92270 1.21301 1.00141 0.94682 0.98224 0.75094 0.88067 1.21487 1.21260 0.82526 0.81779 0.73747 0.86765 0.90432 0.84384 0.83143 0.82916 0.82484 0.90822 0.86682 0.83589 0.84202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.39 12.74 -148.98 -1.90 -1.51 16 2 C -0.10 0.32 2.81 71.24 0.20 0.52 16 3 Si 0.76 -3.79 29.79 68.60 2.04 -1.75 16 4 C -0.03 0.00 5.42 -19.87 -0.11 -0.10 16 5 C -0.14 0.29 8.67 22.27 0.19 0.49 16 6 C -0.02 0.03 9.52 22.27 0.21 0.24 16 7 C -0.68 -0.79 5.95 22.27 0.13 -0.65 16 8 S 2.71 7.84 5.71 -56.49 -0.32 7.52 16 9 O -0.98 -7.23 16.80 -128.00 -2.15 -9.39 16 10 O -0.99 -9.40 17.28 -128.00 -2.21 -11.61 16 11 N -1.09 2.55 5.73 -167.19 -0.96 1.59 16 12 C 0.12 -0.57 4.51 45.52 0.21 -0.36 16 13 H 0.13 -0.94 7.77 -2.39 -0.02 -0.96 16 14 C -0.13 0.56 7.33 31.12 0.23 0.78 16 15 C -0.08 0.16 3.72 -11.01 -0.04 0.12 16 16 H 0.09 0.02 7.41 -2.39 -0.02 0.00 16 17 C -0.11 -0.05 5.29 -19.82 -0.10 -0.15 16 18 C 0.07 0.30 7.25 22.38 0.16 0.46 16 19 F -0.15 -1.21 16.37 44.97 0.74 -0.47 16 20 C -0.17 -0.30 10.03 22.31 0.22 -0.08 16 21 C -0.10 0.20 10.04 22.26 0.22 0.42 16 22 C -0.13 0.48 10.04 22.27 0.22 0.71 16 23 C -0.09 0.32 8.62 22.26 0.19 0.52 16 24 C -0.14 0.69 7.25 31.12 0.23 0.92 16 25 C -0.03 -0.05 9.52 22.27 0.21 0.16 16 26 C -0.12 -0.16 9.61 22.27 0.21 0.05 16 27 H 0.40 -3.36 8.74 -74.05 -0.65 -4.01 16 28 H 0.10 -0.70 7.96 -2.39 -0.02 -0.72 16 29 H -0.29 -0.31 7.11 99.48 0.71 0.40 16 30 H -0.29 0.10 7.11 99.48 0.71 0.81 16 31 H 0.16 -1.10 4.88 -2.91 -0.01 -1.11 16 32 H 0.16 -0.95 7.62 -2.91 -0.02 -0.98 16 33 H 0.43 -1.83 8.78 -96.75 -0.85 -2.68 16 34 H 0.11 -0.81 7.73 -2.39 -0.02 -0.83 16 35 H 0.08 -0.24 8.14 -2.39 -0.02 -0.26 16 36 H 0.14 -0.02 8.06 -2.91 -0.02 -0.04 16 37 H 0.15 -0.95 8.06 -2.91 -0.02 -0.98 16 38 H 0.15 -1.32 8.06 -2.91 -0.02 -1.34 16 39 H 0.16 -1.40 6.64 -2.91 -0.02 -1.42 16 40 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 41 H 0.12 -0.95 6.30 -2.39 -0.02 -0.97 16 42 H 0.15 0.02 7.62 -2.91 -0.02 0.00 16 43 H 0.14 -0.08 8.06 -2.91 -0.02 -0.10 16 Total: 0.00 -24.49 374.21 -2.55 -27.04 By element: Atomic # 1 Polarization: -15.05 SS G_CDS: -0.38 Total: -15.44 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: 2.59 Total: 4.03 kcal Atomic # 7 Polarization: 2.55 SS G_CDS: -0.96 Total: 1.59 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -6.26 Total: -22.51 kcal Atomic # 9 Polarization: -1.21 SS G_CDS: 0.74 Total: -0.47 kcal Atomic # 14 Polarization: -3.79 SS G_CDS: 2.04 Total: -1.75 kcal Atomic # 16 Polarization: 7.84 SS G_CDS: -0.32 Total: 7.52 kcal Total: -24.49 -2.55 -27.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9705098_13421422.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.643 kcal (2) G-P(sol) polarization free energy of solvation -24.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds