Wall clock time and date at job start Mon Mar 8 2021 12:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86292 * 109.47156 * 2 1 4 4 C 1.50701 * 109.47060 * 120.00145 * 2 1 3 5 5 C 1.33387 * 125.20569 * 49.79955 * 4 2 1 6 6 S 1.76208 * 122.53766 * 0.02609 * 5 4 2 7 7 O 1.42102 * 106.40211 * 51.15464 * 6 5 4 8 8 O 1.42099 * 106.40278 * 278.23306 * 6 5 4 9 9 N 1.65602 * 107.21775 * 164.69319 * 6 5 4 10 10 C 1.46500 * 119.99832 * 66.18040 * 9 6 5 11 11 H 1.08996 * 112.85110 * 355.03477 * 10 9 6 12 12 C 1.53776 * 113.61595 * 126.23058 * 10 9 6 13 13 C 1.53786 * 87.08207 * 89.11350 * 12 10 9 14 14 H 1.08996 * 113.61707 * 270.80452 * 13 12 10 15 15 C 1.50701 * 113.61696 * 139.98095 * 13 12 10 16 16 C 1.38432 * 120.01565 * 121.53040 * 15 13 12 17 17 F 1.35103 * 120.02248 * 0.02848 * 16 15 13 18 18 C 1.38481 * 119.94910 * 179.75475 * 16 15 13 19 19 C 1.38167 * 119.97472 * 0.25106 * 18 16 15 20 20 C 1.38267 * 120.02739 * 0.02562 * 19 18 16 21 21 C 1.38217 * 120.05008 * 0.02562 * 20 19 18 22 22 C 1.53782 * 87.17195 * 25.39340 * 13 12 10 23 23 C 1.38426 * 114.92514 * 179.75672 * 5 4 2 24 24 C 1.33390 * 114.91830 * 0.24598 * 23 5 4 25 25 S 1.75884 * 125.20221 * 229.93847 * 4 2 1 26 26 H 0.96703 * 114.00065 * 64.91864 * 1 2 3 27 27 H 1.09005 * 109.46831 * 239.99615 * 2 1 3 28 28 H 1.48496 * 110.00196 * 60.00035 * 3 2 1 29 29 H 1.48501 * 110.00056 * 181.31797 * 3 2 1 30 30 H 0.96999 * 119.99788 * 246.18215 * 9 6 5 31 31 H 1.09007 * 113.61383 * 334.56873 * 12 10 9 32 32 H 1.08997 * 113.61930 * 203.65981 * 12 10 9 33 33 H 1.08008 * 120.00891 * 180.23232 * 18 16 15 34 34 H 1.08003 * 119.98744 * 180.02562 * 19 18 16 35 35 H 1.08002 * 119.97199 * 179.97438 * 20 19 18 36 36 H 1.08003 * 119.98738 * 179.97438 * 21 20 19 37 37 H 1.09001 * 113.61754 * 89.15174 * 22 13 12 38 38 H 1.08996 * 113.61551 * 220.06526 * 22 13 12 39 39 H 1.07993 * 122.54239 * 180.22696 * 23 5 4 40 40 H 1.07993 * 125.20495 * 179.97438 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.5244 -1.9111 1.6452 6 16 0.3100 -2.8509 0.7809 7 8 0.7317 -2.9012 -0.5752 8 8 -0.9537 -2.3406 1.1834 9 7 0.3917 -4.4025 1.3539 10 6 0.0227 -4.6911 2.7419 11 1 -0.2041 -3.7923 3.3153 12 6 -1.0395 -5.7944 2.8804 13 6 0.1236 -6.7995 2.9245 14 1 0.4248 -7.1623 1.9418 15 6 -0.0764 -7.9109 3.9225 16 6 -0.0735 -9.2293 3.5005 17 9 0.1091 -9.5205 2.1939 18 6 -0.2524 -10.2497 4.4195 19 6 -0.4386 -9.9507 5.7555 20 6 -0.4469 -8.6332 6.1750 21 6 -0.2696 -7.6139 5.2585 22 6 0.9977 -5.6489 3.4508 23 6 2.1325 -2.3655 2.8027 24 6 3.0297 -1.5316 3.3308 25 16 3.1413 -0.0817 2.3413 26 1 -0.3933 0.3745 -0.8001 27 1 1.7923 -0.5139 -0.8900 28 1 1.5615 2.4678 1.2084 29 1 3.5345 1.7702 -0.0321 30 1 0.6839 -5.1202 0.7704 31 1 -1.6755 -5.9009 2.0015 32 1 -1.6059 -5.7411 3.8101 33 1 -0.2466 -11.2789 4.0919 34 1 -0.5776 -10.7464 6.4725 35 1 -0.5930 -8.4005 7.2195 36 1 -0.2767 -6.5851 5.5873 37 1 0.9892 -5.5556 4.5368 38 1 2.0038 -5.6380 3.0318 39 1 1.8982 -3.3225 3.2448 40 1 3.5999 -1.7179 4.2288 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_9705098_14772022.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:33:59 Heat of formation + Delta-G solvation = -49.512909 kcal Electronic energy + Delta-G solvation = -29100.399356 eV Core-core repulsion = 24823.323648 eV Total energy + Delta-G solvation = -4277.075708 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.054 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -49.83051 -41.25701 -39.54905 -39.25093 -37.96685 -37.64343 -36.62149 -34.47206 -32.01488 -31.64383 -31.42634 -27.54168 -26.91083 -26.32501 -24.36564 -23.86204 -22.84425 -21.72692 -20.79664 -20.12284 -18.90084 -18.80878 -18.57597 -18.08209 -17.72616 -17.41281 -17.13478 -16.90640 -16.55515 -16.18954 -15.90862 -15.51634 -15.45819 -15.15018 -15.09757 -14.87686 -14.46110 -14.41812 -14.16269 -14.08220 -13.75207 -13.66811 -13.48839 -13.24816 -12.94782 -12.92012 -12.86828 -12.76069 -12.52890 -12.37654 -12.15423 -12.01475 -11.93818 -11.73701 -11.36497 -10.76650 -10.63961 -10.13311 -9.95341 -9.83060 -9.61410 -5.34241 -0.63161 -0.52357 0.12736 0.17780 0.30776 0.62497 0.98119 1.11719 1.46209 1.76340 1.95721 2.52654 2.76451 3.01722 3.18377 3.31240 3.43104 3.47645 3.49546 3.61293 3.74068 3.77893 3.92514 3.95332 4.01213 4.08592 4.13312 4.22352 4.24042 4.29402 4.48657 4.56146 4.58540 4.74554 4.77330 4.80042 4.85081 4.93201 5.02215 5.04745 5.17217 5.20883 5.37105 5.40819 5.84509 5.87619 6.39270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.085 4.085 3 Si 0.694 3.306 4 C -0.052 4.052 5 C -0.657 4.657 6 S 2.719 3.281 7 O -0.953 6.953 8 O -0.930 6.930 9 N -1.101 6.101 10 C 0.121 3.879 11 H 0.110 0.890 12 C -0.136 4.136 13 C -0.075 4.075 14 H 0.104 0.896 15 C -0.105 4.105 16 C 0.100 3.900 17 F -0.138 7.138 18 C -0.152 4.152 19 C -0.094 4.094 20 C -0.127 4.127 21 C -0.091 4.091 22 C -0.148 4.148 23 C -0.090 4.090 24 C -0.205 4.205 25 S 0.138 5.862 26 H 0.397 0.603 27 H 0.110 0.890 28 H -0.233 1.233 29 H -0.234 1.234 30 H 0.421 0.579 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.130 0.870 36 H 0.133 0.867 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.156 0.844 40 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.862 0.333 2.447 3.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.349 6.349 2 C -0.197 4.197 3 Si 0.591 3.409 4 C -0.173 4.173 5 C -0.755 4.755 6 S 2.803 3.197 7 O -0.943 6.943 8 O -0.920 6.920 9 N -0.860 5.860 10 C 0.012 3.988 11 H 0.128 0.872 12 C -0.175 4.175 13 C -0.093 4.093 14 H 0.122 0.878 15 C -0.106 4.106 16 C 0.081 3.919 17 F -0.116 7.116 18 C -0.171 4.171 19 C -0.112 4.112 20 C -0.145 4.145 21 C -0.109 4.109 22 C -0.187 4.187 23 C -0.119 4.119 24 C -0.340 4.340 25 S 0.401 5.599 26 H 0.247 0.753 27 H 0.128 0.872 28 H -0.156 1.156 29 H -0.158 1.158 30 H 0.256 0.744 31 H 0.102 0.898 32 H 0.118 0.882 33 H 0.153 0.847 34 H 0.151 0.849 35 H 0.148 0.852 36 H 0.151 0.849 37 H 0.120 0.880 38 H 0.102 0.898 39 H 0.173 0.827 40 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 2.724 2.483 3.016 4.763 hybrid contribution 0.054 -2.359 0.154 2.365 sum 2.779 0.124 3.171 4.218 Atomic orbital electron populations 1.86507 1.15480 1.86646 1.46227 1.24646 0.87211 1.12063 0.95733 0.94190 0.81489 0.77038 0.88193 1.23542 0.99358 0.95553 0.98821 1.29901 1.23588 1.09757 1.12254 1.01557 0.73773 0.71506 0.72834 1.93580 1.83363 1.85917 1.31475 1.93626 1.37409 1.78035 1.82885 1.55477 1.83265 1.26942 1.20323 1.21766 0.96535 0.98993 0.81463 0.87209 1.23492 0.96237 0.93692 1.04089 1.21493 0.97960 0.91767 0.98089 0.87798 1.19743 1.02927 0.92464 0.95428 1.17600 1.02661 0.93294 0.78324 1.91498 1.92681 1.94111 1.33345 1.21212 1.03145 0.99216 0.93479 1.21071 0.98131 0.97114 0.94924 1.21247 1.00439 0.92641 1.00164 1.20919 0.98468 1.00013 0.91472 1.23685 0.98917 0.94580 1.01469 1.19842 0.96657 1.01357 0.94002 1.25910 1.05432 0.97581 1.05109 1.84439 1.37838 1.20379 1.17234 0.75266 0.87247 1.15583 1.15796 0.74405 0.89810 0.88201 0.84679 0.84944 0.85175 0.84878 0.88023 0.89825 0.82692 0.80571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.93 10.73 -47.49 -0.51 -1.44 16 2 C -0.08 -0.11 2.13 36.01 0.08 -0.03 16 3 Si 0.69 -0.61 31.09 -169.99 -5.29 -5.90 16 4 C -0.05 -0.16 5.79 -36.00 -0.21 -0.37 16 5 C -0.66 -1.84 5.72 -41.21 -0.24 -2.08 16 6 S 2.72 8.49 4.36 -107.50 -0.47 8.02 16 7 O -0.95 -4.85 17.17 -57.17 -0.98 -5.84 16 8 O -0.93 -5.64 16.86 -63.20 -1.07 -6.71 16 9 N -1.10 0.37 5.51 -4.12 -0.02 0.34 16 10 C 0.12 -0.18 2.81 -67.03 -0.19 -0.37 16 11 H 0.11 -0.21 7.53 -51.93 -0.39 -0.60 16 12 C -0.14 0.17 7.34 -25.92 -0.19 -0.02 16 13 C -0.07 0.09 3.71 -90.96 -0.34 -0.25 16 14 H 0.10 -0.08 7.33 -51.93 -0.38 -0.46 16 15 C -0.10 0.01 5.30 -104.55 -0.55 -0.55 16 16 C 0.10 0.14 7.25 -39.42 -0.29 -0.14 16 17 F -0.14 -0.37 16.35 2.25 0.04 -0.33 16 18 C -0.15 -0.05 10.03 -39.52 -0.40 -0.44 16 19 C -0.09 0.09 10.04 -39.60 -0.40 -0.31 16 20 C -0.13 0.18 10.04 -39.58 -0.40 -0.22 16 21 C -0.09 0.12 8.53 -39.59 -0.34 -0.21 16 22 C -0.15 0.41 6.22 -25.82 -0.16 0.25 16 23 C -0.09 -0.06 9.35 -41.21 -0.39 -0.44 16 24 C -0.20 -0.05 11.23 29.04 0.33 0.28 16 25 S 0.14 0.24 20.65 -107.50 -2.22 -1.98 16 26 H 0.40 -1.45 8.86 45.56 0.40 -1.04 16 27 H 0.11 0.00 7.70 -51.93 -0.40 -0.40 16 28 H -0.23 -0.41 7.11 56.52 0.40 -0.01 16 29 H -0.23 -0.12 7.11 56.52 0.40 0.28 16 30 H 0.42 -0.81 8.70 -34.47 -0.30 -1.12 16 31 H 0.08 -0.05 8.14 -51.93 -0.42 -0.47 16 32 H 0.10 -0.22 7.62 -51.93 -0.40 -0.62 16 33 H 0.14 -0.12 8.06 -52.48 -0.42 -0.55 16 34 H 0.13 -0.38 8.06 -52.48 -0.42 -0.80 16 35 H 0.13 -0.43 8.06 -52.49 -0.42 -0.85 16 36 H 0.13 -0.47 6.73 -52.48 -0.35 -0.82 16 37 H 0.10 -0.43 6.41 -51.93 -0.33 -0.76 16 38 H 0.08 -0.26 8.11 -51.93 -0.42 -0.68 16 39 H 0.16 -0.33 4.88 -52.49 -0.26 -0.58 16 40 H 0.18 -0.47 8.06 -52.49 -0.42 -0.89 16 LS Contribution 356.64 15.07 5.37 5.37 Total: 0.00 -10.78 356.64 -12.95 -23.73 By element: Atomic # 1 Polarization: -6.24 SS G_CDS: -4.14 Total: -10.38 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -3.67 Total: -4.90 kcal Atomic # 7 Polarization: 0.37 SS G_CDS: -0.02 Total: 0.34 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: -2.56 Total: -13.98 kcal Atomic # 9 Polarization: -0.37 SS G_CDS: 0.04 Total: -0.33 kcal Atomic # 14 Polarization: -0.61 SS G_CDS: -5.29 Total: -5.90 kcal Atomic # 16 Polarization: 8.73 SS G_CDS: -2.69 Total: 6.04 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -10.78 -12.95 -23.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9705098_14772022.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.778 kcal (2) G-P(sol) polarization free energy of solvation -10.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds