Wall clock time and date at job start Mon Mar 8 2021 12:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86302 * 109.46866 * 2 1 4 4 C 1.50695 * 109.47381 * 119.99651 * 2 1 3 5 5 C 1.33393 * 125.19896 * 65.00181 * 4 2 1 6 6 C 1.38427 * 114.92011 * 180.02562 * 5 4 2 7 7 S 1.76199 * 122.54029 * 179.97438 * 6 5 4 8 8 O 1.42100 * 106.40198 * 203.54343 * 7 6 5 9 9 O 1.42096 * 106.39959 * 336.46408 * 7 6 5 10 10 N 1.65599 * 107.21658 * 90.00399 * 7 6 5 11 11 C 1.46501 * 120.00418 * 65.00023 * 10 7 6 12 12 H 1.09004 * 112.84722 * 13.80090 * 11 10 7 13 13 C 1.53777 * 113.61635 * 144.99822 * 11 10 7 14 14 C 1.53784 * 87.08115 * 89.11561 * 13 11 10 15 15 H 1.08997 * 113.61892 * 270.88638 * 14 13 11 16 16 C 1.50704 * 113.61276 * 140.06303 * 14 13 11 17 17 C 1.38434 * 120.01074 * 119.72424 * 16 14 13 18 18 F 1.35103 * 120.02788 * 0.02562 * 17 16 14 19 19 C 1.38480 * 119.94701 * 179.72529 * 17 16 14 20 20 C 1.38176 * 119.97628 * 0.57351 * 19 17 16 21 21 C 1.38273 * 120.02357 * 359.70045 * 20 19 17 22 22 C 1.38216 * 120.01123 * 300.00294 * 16 14 13 23 23 C 1.53780 * 87.07997 * 25.43383 * 14 13 11 24 24 C 1.33392 * 114.91626 * 0.25028 * 6 5 4 25 25 S 1.75884 * 109.59877 * 359.63459 * 24 6 5 26 26 H 0.96701 * 114.00513 * 60.00672 * 1 2 3 27 27 H 1.09001 * 109.46920 * 240.00342 * 2 1 3 28 28 H 1.48505 * 109.99728 * 298.68100 * 3 2 1 29 29 H 1.48500 * 110.00140 * 59.99663 * 3 2 1 30 30 H 1.07992 * 122.54320 * 0.06342 * 5 4 2 31 31 H 0.97001 * 119.99869 * 244.99817 * 10 7 6 32 32 H 1.09002 * 113.61157 * 203.66423 * 13 11 10 33 33 H 1.08995 * 113.61462 * 334.48581 * 13 11 10 34 34 H 1.08002 * 120.01254 * 180.29608 * 19 17 16 35 35 H 1.07997 * 119.99178 * 179.72814 * 20 19 17 36 36 H 1.07997 * 119.97332 * 180.02562 * 21 20 19 37 37 H 1.07999 * 119.99288 * 359.95216 * 22 16 14 38 38 H 1.08999 * 113.61397 * 220.01943 * 23 14 13 39 39 H 1.08998 * 113.61908 * 89.11529 * 23 14 13 40 40 H 1.08005 * 125.19581 * 179.75726 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 1.2304 5 6 1.7534 -2.0051 1.4974 6 6 2.3054 -2.4357 2.6915 7 16 2.1891 -4.1055 3.2418 8 8 2.3411 -4.0740 4.6543 9 8 1.0536 -4.6630 2.5945 10 7 3.5085 -4.9105 2.6474 11 6 4.8539 -4.5445 3.0970 12 1 4.8459 -3.9092 3.9828 13 6 5.8139 -5.7408 3.2056 14 6 6.1775 -5.4819 1.7339 15 1 5.5384 -6.0106 1.0267 16 6 7.6451 -5.6509 1.4359 17 6 8.0600 -6.5959 0.5133 18 9 7.1496 -7.3668 -0.1209 19 6 9.4085 -6.7461 0.2363 20 6 10.3391 -5.9611 0.8897 21 6 9.9239 -5.0215 1.8152 22 6 8.5777 -4.8664 2.0880 23 6 5.7591 -4.0210 1.9694 24 6 2.9271 -1.4894 3.3968 25 16 2.8413 0.0412 2.5346 26 1 -0.3934 0.4416 -0.7651 27 1 1.7923 -0.5138 -0.8900 28 1 1.5877 2.4585 -1.2243 29 1 1.5613 2.4680 1.2084 30 1 1.2197 -2.6674 0.8320 31 1 3.3905 -5.6245 2.0014 32 1 6.6415 -5.5753 3.8954 33 1 5.3088 -6.6924 3.3710 34 1 9.7330 -7.4798 -0.4868 35 1 11.3911 -6.0811 0.6771 36 1 10.6520 -4.4081 2.3251 37 1 8.2546 -4.1317 2.8106 38 1 5.2096 -3.5844 1.1355 39 1 6.5716 -3.3853 2.3213 40 1 3.4110 -1.6406 4.3505 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_9705098_15065232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:34:02 Heat of formation + Delta-G solvation = -54.283277 kcal Electronic energy + Delta-G solvation = -28559.422079 eV Core-core repulsion = 24282.139513 eV Total energy + Delta-G solvation = -4277.282567 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.054 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -49.83724 -41.22765 -39.43654 -39.23909 -38.18891 -37.71509 -36.84066 -34.44357 -32.01136 -31.66938 -31.43565 -27.24520 -26.87247 -26.29362 -24.85324 -23.87263 -22.85773 -21.28301 -20.70987 -20.11102 -19.09143 -18.81698 -18.61837 -18.43044 -17.74188 -17.44183 -17.10269 -16.94484 -16.56680 -16.28240 -15.94262 -15.67683 -15.51348 -15.16874 -15.03982 -14.47937 -14.33469 -14.30507 -14.14604 -14.06933 -13.97519 -13.67675 -13.52475 -13.25889 -13.11357 -13.02225 -12.90005 -12.85797 -12.62483 -12.46860 -12.40829 -12.01781 -11.93886 -11.61111 -11.35465 -10.74231 -10.61606 -10.20700 -9.96085 -9.83305 -9.62054 -5.22260 -0.75278 -0.48106 0.12320 0.17250 0.29932 0.56679 0.95319 1.13283 1.41830 1.76589 1.99645 2.52287 2.72842 3.10260 3.19224 3.30613 3.34713 3.46606 3.49087 3.62653 3.71137 3.79422 3.81405 3.94582 3.98857 4.03331 4.16596 4.21125 4.28314 4.29066 4.53298 4.57056 4.63958 4.76793 4.82104 4.84933 4.89028 4.90844 5.01738 5.07208 5.16840 5.20294 5.36746 5.40275 5.82732 5.86996 6.25993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.531 6.531 2 C -0.036 4.036 3 Si 0.647 3.353 4 C -0.182 4.182 5 C -0.042 4.042 6 C -0.684 4.684 7 S 2.711 3.289 8 O -0.951 6.951 9 O -0.950 6.950 10 N -1.096 6.096 11 C 0.124 3.876 12 H 0.109 0.891 13 C -0.132 4.132 14 C -0.076 4.076 15 H 0.103 0.897 16 C -0.104 4.104 17 C 0.100 3.900 18 F -0.138 7.138 19 C -0.152 4.152 20 C -0.095 4.095 21 C -0.127 4.127 22 C -0.091 4.091 23 C -0.147 4.147 24 C -0.088 4.088 25 S 0.168 5.832 26 H 0.384 0.616 27 H 0.089 0.911 28 H -0.237 1.237 29 H -0.235 1.235 30 H 0.155 0.845 31 H 0.421 0.579 32 H 0.100 0.900 33 H 0.082 0.918 34 H 0.135 0.865 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.134 0.866 38 H 0.081 0.919 39 H 0.099 0.901 40 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.498 3.242 -2.099 8.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.339 6.339 2 C -0.148 4.148 3 Si 0.545 3.455 4 C -0.300 4.300 5 C -0.071 4.071 6 C -0.783 4.783 7 S 2.797 3.203 8 O -0.941 6.941 9 O -0.940 6.940 10 N -0.855 5.855 11 C 0.015 3.985 12 H 0.127 0.873 13 C -0.171 4.171 14 C -0.094 4.094 15 H 0.121 0.879 16 C -0.105 4.105 17 C 0.081 3.919 18 F -0.117 7.117 19 C -0.171 4.171 20 C -0.113 4.113 21 C -0.145 4.145 22 C -0.108 4.108 23 C -0.186 4.186 24 C -0.227 4.227 25 S 0.432 5.568 26 H 0.233 0.767 27 H 0.107 0.893 28 H -0.160 1.160 29 H -0.158 1.158 30 H 0.173 0.827 31 H 0.257 0.743 32 H 0.118 0.882 33 H 0.101 0.899 34 H 0.153 0.847 35 H 0.150 0.850 36 H 0.148 0.852 37 H 0.152 0.848 38 H 0.100 0.900 39 H 0.118 0.882 40 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 7.200 5.052 -0.659 8.820 hybrid contribution -1.416 -1.447 -1.714 2.652 sum 5.784 3.605 -2.373 7.216 Atomic orbital electron populations 1.86625 1.17165 1.80058 1.50012 1.24032 0.84732 1.10091 0.95913 0.95388 0.91654 0.75159 0.83315 1.23770 1.08168 0.97168 1.00877 1.19572 0.97461 0.95296 0.94765 1.29982 1.15556 1.25893 1.06915 1.01591 0.72225 0.72768 0.73699 1.93614 1.85810 1.86558 1.28094 1.93622 1.47019 1.76733 1.76626 1.55365 1.19547 1.49798 1.60759 1.21671 0.81249 0.98179 0.97352 0.87282 1.23412 0.98981 0.99031 0.95649 1.21506 0.91681 0.98173 0.98058 0.87879 1.19743 0.96286 0.96922 0.97575 1.17604 0.86620 0.92659 0.95033 1.91498 1.66363 1.73386 1.80417 1.21213 0.91318 1.02134 1.02412 1.21073 0.99720 0.94894 0.95577 1.21252 0.95954 0.98817 0.98470 1.20921 0.92346 0.98590 0.98985 1.23640 0.99662 0.95798 0.99480 1.25905 0.98745 0.95842 1.02228 1.84371 1.50070 1.10549 1.11819 0.76728 0.89347 1.15975 1.15832 0.82699 0.74328 0.88177 0.89928 0.84716 0.84969 0.85179 0.84849 0.89994 0.88244 0.79646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.46 12.86 -35.23 -0.45 -0.92 16 2 C -0.04 0.02 2.95 36.00 0.11 0.13 16 3 Si 0.65 -0.95 30.98 -169.99 -5.27 -6.22 16 4 C -0.18 -0.12 5.73 -36.00 -0.21 -0.33 16 5 C -0.04 -0.05 9.59 -41.21 -0.40 -0.45 16 6 C -0.68 -0.39 5.86 -41.21 -0.24 -0.63 16 7 S 2.71 3.46 5.77 -107.50 -0.62 2.84 16 8 O -0.95 -3.58 17.16 -57.17 -0.98 -4.56 16 9 O -0.95 -4.44 17.63 -57.17 -1.01 -5.45 16 10 N -1.10 1.97 5.73 -4.20 -0.02 1.94 16 11 C 0.12 -0.35 4.51 -67.12 -0.30 -0.65 16 12 H 0.11 -0.42 7.77 -51.93 -0.40 -0.82 16 13 C -0.13 0.34 7.33 -25.92 -0.19 0.15 16 14 C -0.08 0.15 3.72 -90.96 -0.34 -0.19 16 15 H 0.10 -0.15 7.41 -51.93 -0.38 -0.54 16 16 C -0.10 0.08 5.29 -104.56 -0.55 -0.48 16 17 C 0.10 0.09 7.25 -39.42 -0.29 -0.20 16 18 F -0.14 -0.30 16.37 2.25 0.04 -0.27 16 19 C -0.15 0.02 10.03 -39.51 -0.40 -0.37 16 20 C -0.09 0.13 10.04 -39.59 -0.40 -0.27 16 21 C -0.13 0.25 10.05 -39.57 -0.40 -0.15 16 22 C -0.09 0.18 8.61 -39.59 -0.34 -0.16 16 23 C -0.15 0.51 7.26 -25.92 -0.19 0.32 16 24 C -0.09 0.07 10.70 29.04 0.31 0.38 16 25 S 0.17 -0.12 20.60 -107.50 -2.21 -2.34 16 26 H 0.38 -1.30 8.74 45.56 0.40 -0.90 16 27 H 0.09 -0.24 7.96 -51.93 -0.41 -0.65 16 28 H -0.24 0.00 7.11 56.52 0.40 0.40 16 29 H -0.23 -0.34 7.11 56.52 0.40 0.06 16 30 H 0.16 0.16 7.96 -52.49 -0.42 -0.26 16 31 H 0.42 -1.28 8.78 -34.47 -0.30 -1.58 16 32 H 0.10 -0.35 7.72 -51.93 -0.40 -0.75 16 33 H 0.08 -0.17 8.14 -51.93 -0.42 -0.60 16 34 H 0.13 -0.18 8.06 -52.49 -0.42 -0.60 16 35 H 0.13 -0.43 8.06 -52.49 -0.42 -0.85 16 36 H 0.13 -0.50 8.06 -52.49 -0.42 -0.92 16 37 H 0.13 -0.57 6.66 -52.49 -0.35 -0.92 16 38 H 0.08 -0.27 8.14 -51.93 -0.42 -0.69 16 39 H 0.10 -0.47 6.32 -51.93 -0.33 -0.80 16 40 H 0.19 -0.59 8.00 -52.48 -0.42 -1.01 16 LS Contribution 368.02 15.07 5.55 5.55 Total: 0.00 -10.61 368.02 -13.13 -23.74 By element: Atomic # 1 Polarization: -7.09 SS G_CDS: -4.33 Total: -11.43 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -3.82 Total: -2.89 kcal Atomic # 7 Polarization: 1.97 SS G_CDS: -0.02 Total: 1.94 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: -2.44 Total: -10.92 kcal Atomic # 9 Polarization: -0.30 SS G_CDS: 0.04 Total: -0.27 kcal Atomic # 14 Polarization: -0.95 SS G_CDS: -5.27 Total: -6.22 kcal Atomic # 16 Polarization: 3.33 SS G_CDS: -2.83 Total: 0.50 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -10.61 -13.13 -23.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9705098_15065232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.542 kcal (2) G-P(sol) polarization free energy of solvation -10.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds