Wall clock time and date at job start Mon Mar 8 2021 12:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86302 * 109.46866 * 2 1 4 4 C 1.50695 * 109.47381 * 119.99651 * 2 1 3 5 5 C 1.33393 * 125.19896 * 65.00181 * 4 2 1 6 6 C 1.38427 * 114.92011 * 180.02562 * 5 4 2 7 7 S 1.76199 * 122.54029 * 179.97438 * 6 5 4 8 8 O 1.42100 * 106.40198 * 203.54343 * 7 6 5 9 9 O 1.42096 * 106.39959 * 336.46408 * 7 6 5 10 10 N 1.65599 * 107.21658 * 90.00399 * 7 6 5 11 11 C 1.46501 * 120.00418 * 65.00023 * 10 7 6 12 12 H 1.09004 * 112.84722 * 13.80090 * 11 10 7 13 13 C 1.53777 * 113.61635 * 144.99822 * 11 10 7 14 14 C 1.53784 * 87.08115 * 89.11561 * 13 11 10 15 15 H 1.08997 * 113.61892 * 270.88638 * 14 13 11 16 16 C 1.50704 * 113.61276 * 140.06303 * 14 13 11 17 17 C 1.38434 * 120.01074 * 119.72424 * 16 14 13 18 18 F 1.35103 * 120.02788 * 0.02562 * 17 16 14 19 19 C 1.38480 * 119.94701 * 179.72529 * 17 16 14 20 20 C 1.38176 * 119.97628 * 0.57351 * 19 17 16 21 21 C 1.38273 * 120.02357 * 359.70045 * 20 19 17 22 22 C 1.38216 * 120.01123 * 300.00294 * 16 14 13 23 23 C 1.53780 * 87.07997 * 25.43383 * 14 13 11 24 24 C 1.33392 * 114.91626 * 0.25028 * 6 5 4 25 25 S 1.75884 * 109.59877 * 359.63459 * 24 6 5 26 26 H 0.96701 * 114.00513 * 60.00672 * 1 2 3 27 27 H 1.09001 * 109.46920 * 240.00342 * 2 1 3 28 28 H 1.48505 * 109.99728 * 298.68100 * 3 2 1 29 29 H 1.48500 * 110.00140 * 59.99663 * 3 2 1 30 30 H 1.07992 * 122.54320 * 0.06342 * 5 4 2 31 31 H 0.97001 * 119.99869 * 244.99817 * 10 7 6 32 32 H 1.09002 * 113.61157 * 203.66423 * 13 11 10 33 33 H 1.08995 * 113.61462 * 334.48581 * 13 11 10 34 34 H 1.08002 * 120.01254 * 180.29608 * 19 17 16 35 35 H 1.07997 * 119.99178 * 179.72814 * 20 19 17 36 36 H 1.07997 * 119.97332 * 180.02562 * 21 20 19 37 37 H 1.07999 * 119.99288 * 359.95216 * 22 16 14 38 38 H 1.08999 * 113.61397 * 220.01943 * 23 14 13 39 39 H 1.08998 * 113.61908 * 89.11529 * 23 14 13 40 40 H 1.08005 * 125.19581 * 179.75726 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 1.2304 5 6 1.7534 -2.0051 1.4974 6 6 2.3054 -2.4357 2.6915 7 16 2.1891 -4.1055 3.2418 8 8 2.3411 -4.0740 4.6543 9 8 1.0536 -4.6630 2.5945 10 7 3.5085 -4.9105 2.6474 11 6 4.8539 -4.5445 3.0970 12 1 4.8459 -3.9092 3.9828 13 6 5.8139 -5.7408 3.2056 14 6 6.1775 -5.4819 1.7339 15 1 5.5384 -6.0106 1.0267 16 6 7.6451 -5.6509 1.4359 17 6 8.0600 -6.5959 0.5133 18 9 7.1496 -7.3668 -0.1209 19 6 9.4085 -6.7461 0.2363 20 6 10.3391 -5.9611 0.8897 21 6 9.9239 -5.0215 1.8152 22 6 8.5777 -4.8664 2.0880 23 6 5.7591 -4.0210 1.9694 24 6 2.9271 -1.4894 3.3968 25 16 2.8413 0.0412 2.5346 26 1 -0.3934 0.4416 -0.7651 27 1 1.7923 -0.5138 -0.8900 28 1 1.5877 2.4585 -1.2243 29 1 1.5613 2.4680 1.2084 30 1 1.2197 -2.6674 0.8320 31 1 3.3905 -5.6245 2.0014 32 1 6.6415 -5.5753 3.8954 33 1 5.3088 -6.6924 3.3710 34 1 9.7330 -7.4798 -0.4868 35 1 11.3911 -6.0811 0.6771 36 1 10.6520 -4.4081 2.3251 37 1 8.2546 -4.1317 2.8106 38 1 5.2096 -3.5844 1.1355 39 1 6.5716 -3.3853 2.3213 40 1 3.4110 -1.6406 4.3505 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_9705098_15065232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:34:01 Heat of formation + Delta-G solvation = -55.559947 kcal Electronic energy + Delta-G solvation = -28559.477440 eV Core-core repulsion = 24282.139513 eV Total energy + Delta-G solvation = -4277.337928 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.054 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.88215 -41.04288 -39.41277 -39.08710 -38.38979 -37.69789 -37.05547 -34.33040 -31.98525 -31.52621 -31.30013 -27.20562 -26.62146 -26.12193 -24.84497 -23.74231 -22.71306 -21.29230 -20.61784 -20.01671 -19.05763 -18.79490 -18.59103 -18.44121 -17.76617 -17.35984 -17.02142 -16.79834 -16.60416 -16.24462 -15.98288 -15.69145 -15.33844 -15.01324 -14.91623 -14.42506 -14.27434 -14.24815 -14.15221 -13.99350 -13.94615 -13.57211 -13.41737 -13.34066 -13.25263 -13.10777 -12.88630 -12.74811 -12.68663 -12.46387 -12.25126 -11.84250 -11.76004 -11.59687 -11.16118 -10.67232 -10.47465 -10.17206 -9.82276 -9.79499 -9.51860 -5.11455 -0.80481 -0.46206 0.23850 0.30453 0.34927 0.60044 0.95656 1.18398 1.50245 1.83513 2.01716 2.65743 2.66875 3.16963 3.32255 3.34900 3.50776 3.63844 3.68047 3.70084 3.89838 3.93129 3.99781 4.11224 4.17752 4.23513 4.27294 4.38322 4.41927 4.44408 4.64964 4.74066 4.85896 4.91784 4.95110 5.02868 5.05157 5.06462 5.13360 5.17445 5.31954 5.41366 5.53905 5.57366 5.98406 6.01534 6.48718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.049 4.049 3 Si 0.721 3.279 4 C -0.198 4.198 5 C -0.058 4.058 6 C -0.691 4.691 7 S 2.729 3.271 8 O -0.977 6.977 9 O -0.991 6.991 10 N -1.088 6.088 11 C 0.118 3.882 12 H 0.125 0.875 13 C -0.130 4.130 14 C -0.082 4.082 15 H 0.089 0.911 16 C -0.108 4.108 17 C 0.066 3.934 18 F -0.155 7.155 19 C -0.167 4.167 20 C -0.102 4.102 21 C -0.127 4.127 22 C -0.091 4.091 23 C -0.137 4.137 24 C -0.083 4.083 25 S 0.192 5.808 26 H 0.399 0.601 27 H 0.109 0.891 28 H -0.256 1.256 29 H -0.276 1.276 30 H 0.148 0.852 31 H 0.426 0.574 32 H 0.114 0.886 33 H 0.073 0.927 34 H 0.136 0.864 35 H 0.149 0.851 36 H 0.154 0.846 37 H 0.161 0.839 38 H 0.080 0.920 39 H 0.121 0.879 40 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.151 4.727 -1.392 10.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.367 6.367 2 C -0.160 4.160 3 Si 0.623 3.377 4 C -0.316 4.316 5 C -0.087 4.087 6 C -0.792 4.792 7 S 2.817 3.183 8 O -0.967 6.967 9 O -0.981 6.981 10 N -0.849 5.849 11 C 0.010 3.990 12 H 0.143 0.857 13 C -0.169 4.169 14 C -0.100 4.100 15 H 0.108 0.892 16 C -0.109 4.109 17 C 0.047 3.953 18 F -0.134 7.134 19 C -0.185 4.185 20 C -0.120 4.120 21 C -0.145 4.145 22 C -0.109 4.109 23 C -0.176 4.176 24 C -0.222 4.222 25 S 0.456 5.544 26 H 0.251 0.749 27 H 0.127 0.873 28 H -0.180 1.180 29 H -0.202 1.202 30 H 0.166 0.834 31 H 0.263 0.737 32 H 0.133 0.867 33 H 0.092 0.908 34 H 0.154 0.846 35 H 0.167 0.833 36 H 0.171 0.829 37 H 0.178 0.822 38 H 0.099 0.901 39 H 0.139 0.861 40 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 8.853 6.499 0.029 10.982 hybrid contribution -1.891 -1.864 -1.938 3.287 sum 6.961 4.636 -1.908 8.579 Atomic orbital electron populations 1.86576 1.18158 1.80654 1.51336 1.24338 0.84166 1.11100 0.96354 0.94575 0.90400 0.72855 0.79917 1.24053 1.08441 0.97276 1.01790 1.19633 0.98102 0.95714 0.95234 1.29742 1.16838 1.25444 1.07210 1.00719 0.71897 0.72810 0.72852 1.93573 1.86271 1.87108 1.29781 1.93563 1.49525 1.77865 1.77193 1.55113 1.19431 1.49579 1.60741 1.21880 0.80345 0.98465 0.98280 0.85711 1.23454 0.99325 0.98725 0.95423 1.21527 0.90946 0.99386 0.98176 0.89239 1.19944 0.97168 0.96597 0.97188 1.17994 0.86929 0.93873 0.96494 1.91445 1.66958 1.74031 1.80955 1.21387 0.91364 1.02795 1.02997 1.21352 1.00347 0.94776 0.95554 1.21613 0.96581 0.98409 0.97855 1.21253 0.92120 0.98538 0.98946 1.23654 0.99847 0.94964 0.99093 1.26271 0.97744 0.95428 1.02766 1.84286 1.49206 1.09997 1.10937 0.74945 0.87289 1.18023 1.20190 0.83438 0.73702 0.86736 0.90837 0.84610 0.83314 0.82870 0.82173 0.90090 0.86126 0.77192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.17 12.86 -148.98 -1.92 -3.09 16 2 C -0.05 0.07 2.95 71.23 0.21 0.28 16 3 Si 0.72 -2.39 30.98 68.60 2.13 -0.27 16 4 C -0.20 -0.25 5.73 24.59 0.14 -0.11 16 5 C -0.06 -0.18 9.59 21.22 0.20 0.02 16 6 C -0.69 -0.85 5.86 21.22 0.12 -0.73 16 7 S 2.73 9.18 5.77 -56.49 -0.33 8.85 16 8 O -0.98 -7.66 17.16 -128.00 -2.20 -9.86 16 9 O -0.99 -11.12 17.63 -128.00 -2.26 -13.37 16 10 N -1.09 3.40 5.73 -167.19 -0.96 2.44 16 11 C 0.12 -0.77 4.51 45.52 0.21 -0.56 16 12 H 0.13 -1.18 7.77 -2.38 -0.02 -1.20 16 13 C -0.13 0.74 7.33 31.12 0.23 0.97 16 14 C -0.08 0.32 3.72 -11.01 -0.04 0.28 16 15 H 0.09 -0.13 7.41 -2.39 -0.02 -0.14 16 16 C -0.11 0.16 5.29 -19.82 -0.10 0.06 16 17 C 0.07 0.20 7.25 22.37 0.16 0.36 16 18 F -0.16 -1.05 16.37 44.97 0.74 -0.31 16 19 C -0.17 -0.11 10.03 22.31 0.22 0.12 16 20 C -0.10 0.33 10.04 22.26 0.22 0.56 16 21 C -0.13 0.71 10.05 22.28 0.22 0.93 16 22 C -0.09 0.52 8.61 22.26 0.19 0.71 16 23 C -0.14 1.11 7.26 31.12 0.23 1.33 16 24 C -0.08 0.22 10.70 66.72 0.71 0.93 16 25 S 0.19 -0.46 20.60 -56.49 -1.16 -1.62 16 26 H 0.40 -2.60 8.74 -74.06 -0.65 -3.24 16 27 H 0.11 -0.65 7.96 -2.39 -0.02 -0.67 16 28 H -0.26 0.09 7.11 99.48 0.71 0.80 16 29 H -0.28 -0.93 7.11 99.48 0.71 -0.23 16 30 H 0.15 0.56 7.96 -2.91 -0.02 0.54 16 31 H 0.43 -2.08 8.78 -96.74 -0.85 -2.93 16 32 H 0.11 -0.98 7.72 -2.39 -0.02 -0.99 16 33 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 34 H 0.14 -0.13 8.06 -2.91 -0.02 -0.15 16 35 H 0.15 -1.10 8.06 -2.91 -0.02 -1.12 16 36 H 0.15 -1.60 8.06 -2.91 -0.02 -1.63 16 37 H 0.16 -1.87 6.66 -2.91 -0.02 -1.89 16 38 H 0.08 -0.60 8.14 -2.39 -0.02 -0.62 16 39 H 0.12 -1.48 6.32 -2.39 -0.02 -1.50 16 40 H 0.21 -1.76 8.00 -2.91 -0.02 -1.78 16 Total: 0.00 -25.76 368.02 -3.37 -29.13 By element: Atomic # 1 Polarization: -16.70 SS G_CDS: -0.35 Total: -17.05 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: 2.93 Total: 5.15 kcal Atomic # 7 Polarization: 3.40 SS G_CDS: -0.96 Total: 2.44 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -6.37 Total: -26.32 kcal Atomic # 9 Polarization: -1.05 SS G_CDS: 0.74 Total: -0.31 kcal Atomic # 14 Polarization: -2.39 SS G_CDS: 2.13 Total: -0.27 kcal Atomic # 16 Polarization: 8.72 SS G_CDS: -1.49 Total: 7.23 kcal Total: -25.76 -3.37 -29.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9705098_15065232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.427 kcal (2) G-P(sol) polarization free energy of solvation -25.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds