Wall clock time and date at job start Mon Mar 8 2021 12:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86291 * 109.47505 * 2 1 4 4 C 1.50700 * 109.46814 * 119.99951 * 2 1 3 5 5 C 1.38240 * 119.99973 * 64.99640 * 4 2 1 6 6 C 1.38234 * 119.99729 * 179.97438 * 5 4 2 7 7 C 1.38238 * 120.00440 * 0.02998 * 6 5 4 8 8 S 1.76199 * 120.00175 * 179.97438 * 7 6 5 9 9 O 1.42096 * 106.40321 * 336.45507 * 8 7 6 10 10 O 1.42108 * 106.39883 * 203.53516 * 8 7 6 11 11 N 1.65597 * 107.22117 * 89.99665 * 8 7 6 12 12 C 1.46499 * 119.99926 * 64.72196 * 11 8 7 13 13 H 1.08997 * 112.85367 * 346.47255 * 12 11 8 14 14 C 1.53774 * 113.61461 * 117.78216 * 12 11 8 15 15 C 1.53779 * 87.08351 * 89.11806 * 14 12 11 16 16 H 1.09004 * 113.61211 * 270.88185 * 15 14 12 17 17 C 1.50698 * 113.69288 * 139.99762 * 15 14 12 18 18 C 1.38236 * 119.99860 * 322.18493 * 17 15 14 19 19 C 1.38231 * 120.00196 * 179.76717 * 18 17 15 20 20 C 1.38241 * 119.99645 * 0.49279 * 19 18 17 21 21 C 1.38229 * 120.00102 * 359.78268 * 20 19 18 22 22 C 1.38231 * 119.99939 * 359.96144 * 21 20 19 23 23 C 1.53777 * 87.08017 * 25.43152 * 15 14 12 24 24 C 1.38235 * 119.99428 * 0.24609 * 7 6 5 25 25 C 1.38234 * 119.99906 * 244.97362 * 4 2 1 26 26 H 0.96706 * 113.99901 * 60.00213 * 1 2 3 27 27 H 1.08998 * 109.46926 * 239.99490 * 2 1 3 28 28 H 1.48500 * 110.00134 * 59.99874 * 3 2 1 29 29 H 1.48500 * 110.00389 * 181.31830 * 3 2 1 30 30 H 1.07993 * 120.00191 * 359.97438 * 5 4 2 31 31 H 1.08007 * 120.00126 * 179.97438 * 6 5 4 32 32 H 0.97001 * 120.00224 * 245.00409 * 11 8 7 33 33 H 1.09001 * 113.61629 * 203.66632 * 14 12 11 34 34 H 1.09000 * 113.61594 * 334.56468 * 14 12 11 35 35 H 1.08002 * 119.99684 * 0.02562 * 18 17 15 36 36 H 1.07995 * 120.00541 * 180.24861 * 19 18 17 37 37 H 1.08005 * 119.99568 * 179.77054 * 20 19 18 38 38 H 1.08004 * 120.00276 * 179.97438 * 21 20 19 39 39 H 1.08006 * 120.00204 * 180.02562 * 22 21 20 40 40 H 1.09002 * 113.61093 * 220.02028 * 23 15 14 41 41 H 1.09001 * 113.61256 * 89.12388 * 23 15 14 42 42 H 1.08000 * 119.99703 * 179.72947 * 24 7 6 43 43 H 1.07996 * 120.00062 * 0.02562 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7563 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.6845 -2.0602 1.3984 6 6 2.1457 -2.7119 2.5269 7 6 2.8531 -2.0138 3.4878 8 16 3.4403 -2.8444 4.9264 9 8 2.6109 -3.9854 5.0977 10 8 3.6069 -1.8475 5.9254 11 7 4.9553 -3.4156 4.5787 12 6 6.0471 -2.4776 4.3065 13 1 5.6974 -1.4603 4.1311 14 6 7.2032 -2.5681 5.3164 15 6 7.8194 -3.6351 4.3964 16 1 7.4915 -4.6496 4.6236 17 6 9.3154 -3.5217 4.2546 18 6 9.9112 -2.2759 4.1921 19 6 11.2839 -2.1718 4.0669 20 6 12.0599 -3.3135 3.9940 21 6 11.4635 -4.5593 4.0507 22 6 10.0913 -4.6634 4.1812 23 6 7.0398 -2.9792 3.2445 24 6 3.0948 -0.6628 3.3225 25 6 2.6391 -0.0124 2.1910 26 1 -0.3933 0.4417 -0.7651 27 1 1.7923 -0.5139 -0.8899 28 1 1.5616 2.4678 1.2085 29 1 3.5347 1.7702 -0.0321 30 1 1.1315 -2.6055 0.6481 31 1 1.9526 -3.7664 2.6584 32 1 5.1188 -4.3714 4.5513 33 1 7.7957 -1.6557 5.3848 34 1 6.9025 -2.9527 6.2910 35 1 9.3046 -1.3840 4.2454 36 1 11.7498 -1.1985 4.0222 37 1 13.1321 -3.2321 3.8924 38 1 12.0697 -5.4513 3.9933 39 1 9.6254 -5.6367 4.2260 40 1 6.6072 -3.6959 2.5464 41 1 7.5877 -2.1793 2.7463 42 1 3.6437 -0.1165 4.0752 43 1 2.8318 1.0421 2.0598 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_9705154_13421422.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:34:14 Heat of formation + Delta-G solvation = -18.383478 kcal Electronic energy + Delta-G solvation = -27403.417614 eV Core-core repulsion = 23507.993508 eV Total energy + Delta-G solvation = -3895.424106 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.107 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -41.28368 -40.72718 -39.21050 -38.23832 -37.79271 -36.88067 -34.39563 -33.24397 -32.32204 -31.88586 -31.38928 -27.31553 -26.81184 -26.13223 -24.23008 -23.59901 -22.90111 -22.61524 -20.94212 -20.29381 -19.29033 -18.63099 -18.59900 -17.86402 -17.37077 -17.07666 -16.82588 -16.33985 -16.16076 -16.03601 -15.74408 -15.31378 -15.22477 -14.88212 -14.73863 -14.54485 -14.33191 -14.21539 -14.06245 -13.96007 -13.72460 -13.43183 -13.34184 -13.11869 -13.05391 -12.83720 -12.54697 -12.44247 -12.25096 -12.15764 -12.01552 -11.78785 -11.75677 -11.27648 -10.68609 -10.62985 -10.36543 -10.23556 -9.83996 -9.58455 -5.13278 -0.76686 -0.41995 0.08685 0.40714 0.47964 1.07811 1.47916 1.79771 1.80209 2.23811 2.68342 2.80711 3.11697 3.19039 3.32489 3.51633 3.55516 3.57497 3.62714 3.70467 3.82365 3.90441 4.00314 4.02464 4.07839 4.10522 4.14934 4.22222 4.27806 4.46953 4.50094 4.56123 4.61436 4.62806 4.69997 4.80581 4.83024 4.88003 4.89949 4.95549 5.07371 5.12654 5.15065 5.27505 5.55504 5.58404 5.61777 5.68624 5.80688 6.07914 6.41759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.082 4.082 3 Si 0.686 3.314 4 C -0.018 4.018 5 C -0.110 4.110 6 C -0.015 4.015 7 C -0.675 4.675 8 S 2.696 3.304 9 O -0.953 6.953 10 O -0.949 6.949 11 N -1.097 6.097 12 C 0.125 3.875 13 H 0.101 0.899 14 C -0.143 4.143 15 C -0.074 4.074 16 H 0.099 0.901 17 C -0.072 4.072 18 C -0.118 4.118 19 C -0.118 4.118 20 C -0.124 4.124 21 C -0.118 4.118 22 C -0.117 4.117 23 C -0.136 4.136 24 C -0.015 4.015 25 C -0.144 4.144 26 H 0.386 0.614 27 H 0.081 0.919 28 H -0.248 1.248 29 H -0.252 1.252 30 H 0.139 0.861 31 H 0.146 0.854 32 H 0.421 0.579 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.079 0.921 41 H 0.097 0.903 42 H 0.145 0.855 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.494 1.704 -6.837 7.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.349 6.349 2 C -0.193 4.193 3 Si 0.587 3.413 4 C -0.018 4.018 5 C -0.129 4.129 6 C -0.034 4.034 7 C -0.761 4.761 8 S 2.785 3.215 9 O -0.943 6.943 10 O -0.938 6.938 11 N -0.855 5.855 12 C 0.017 3.983 13 H 0.119 0.881 14 C -0.182 4.182 15 C -0.092 4.092 16 H 0.117 0.883 17 C -0.072 4.072 18 C -0.136 4.136 19 C -0.136 4.136 20 C -0.142 4.142 21 C -0.136 4.136 22 C -0.135 4.135 23 C -0.175 4.175 24 C -0.034 4.034 25 C -0.163 4.163 26 H 0.234 0.766 27 H 0.099 0.901 28 H -0.172 1.172 29 H -0.176 1.176 30 H 0.157 0.843 31 H 0.164 0.836 32 H 0.256 0.744 33 H 0.117 0.883 34 H 0.100 0.900 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.098 0.902 41 H 0.115 0.885 42 H 0.163 0.837 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.571 2.091 -5.061 6.049 hybrid contribution 0.202 -0.726 -0.675 1.011 sum 2.772 1.365 -5.735 6.515 Atomic orbital electron populations 1.86495 1.16573 1.81925 1.49937 1.24820 0.86308 1.10929 0.97234 0.95079 0.80881 0.77754 0.87605 1.19729 0.93991 0.94260 0.93824 1.21184 0.99510 0.93893 0.98341 1.21012 0.91064 1.00176 0.91119 1.31010 1.16216 1.06207 1.22697 1.01946 0.72184 0.73620 0.73745 1.93623 1.65503 1.49893 1.85261 1.93623 1.85359 1.60808 1.54057 1.55373 1.25051 1.16671 1.88419 1.21643 0.87072 0.92341 0.97218 0.88056 1.23573 0.96279 0.99746 0.98641 1.21558 0.90595 0.99803 0.97243 0.88278 1.19687 0.94693 0.93253 0.99568 1.21011 0.94818 0.97105 1.00670 1.21178 0.93911 0.98678 0.99800 1.21204 1.00036 0.92685 1.00308 1.21190 0.94905 0.97736 0.99746 1.21082 0.93847 0.98114 1.00417 1.23463 0.96559 1.01225 0.96299 1.20857 0.94379 0.92184 0.96014 1.21039 1.00934 0.99510 0.94776 0.76553 0.90093 1.17205 1.17650 0.84316 0.83647 0.74390 0.88347 0.89965 0.85979 0.86015 0.86085 0.86028 0.86133 0.90191 0.88450 0.83733 0.85390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.35 12.81 -35.23 -0.45 -0.10 16 2 C -0.08 0.09 2.79 36.01 0.10 0.19 16 3 Si 0.69 -1.40 29.85 -169.99 -5.07 -6.47 16 4 C -0.02 -0.02 5.38 -104.62 -0.56 -0.59 16 5 C -0.11 -0.12 9.69 -39.58 -0.38 -0.50 16 6 C -0.01 -0.02 9.52 -39.58 -0.38 -0.39 16 7 C -0.67 -0.97 5.94 -39.58 -0.24 -1.20 16 8 S 2.70 4.46 5.68 -107.50 -0.61 3.85 16 9 O -0.95 -4.18 17.28 -57.17 -0.99 -5.17 16 10 O -0.95 -4.24 17.04 -57.17 -0.97 -5.21 16 11 N -1.10 1.54 5.73 -4.20 -0.02 1.52 16 12 C 0.13 -0.23 4.44 -67.12 -0.30 -0.53 16 13 H 0.10 -0.27 7.78 -51.93 -0.40 -0.67 16 14 C -0.14 0.20 7.26 -25.92 -0.19 0.02 16 15 C -0.07 0.12 3.80 -90.96 -0.35 -0.23 16 16 H 0.10 -0.22 8.06 -51.93 -0.42 -0.64 16 17 C -0.07 0.00 5.29 -104.63 -0.55 -0.55 16 18 C -0.12 0.01 8.60 -39.58 -0.34 -0.33 16 19 C -0.12 -0.03 10.05 -39.58 -0.40 -0.43 16 20 C -0.12 -0.06 10.05 -39.58 -0.40 -0.46 16 21 C -0.12 -0.06 10.05 -39.59 -0.40 -0.45 16 22 C -0.12 -0.04 9.71 -39.59 -0.38 -0.43 16 23 C -0.14 0.33 7.33 -25.92 -0.19 0.14 16 24 C -0.02 -0.02 9.26 -39.58 -0.37 -0.39 16 25 C -0.14 -0.23 8.67 -39.58 -0.34 -0.57 16 26 H 0.39 -2.22 8.74 45.56 0.40 -1.82 16 27 H 0.08 -0.25 7.96 -51.93 -0.41 -0.66 16 28 H -0.25 -0.30 7.05 56.52 0.40 0.10 16 29 H -0.25 -0.02 7.11 56.52 0.40 0.38 16 30 H 0.14 -0.08 8.06 -52.49 -0.42 -0.50 16 31 H 0.15 -0.07 7.62 -52.48 -0.40 -0.47 16 32 H 0.42 -1.32 8.78 -34.47 -0.30 -1.62 16 33 H 0.10 -0.20 6.33 -51.93 -0.33 -0.53 16 34 H 0.08 -0.06 8.14 -51.93 -0.42 -0.48 16 35 H 0.12 -0.21 6.68 -52.49 -0.35 -0.56 16 36 H 0.12 -0.16 8.06 -52.49 -0.42 -0.58 16 37 H 0.12 -0.13 8.06 -52.48 -0.42 -0.55 16 38 H 0.12 -0.13 8.06 -52.48 -0.42 -0.55 16 39 H 0.12 -0.13 8.06 -52.48 -0.42 -0.55 16 40 H 0.08 -0.21 8.14 -51.93 -0.42 -0.64 16 41 H 0.10 -0.26 7.71 -51.93 -0.40 -0.66 16 42 H 0.14 -0.05 7.61 -52.49 -0.40 -0.45 16 43 H 0.13 0.08 4.87 -52.49 -0.26 -0.17 16 LS Contribution 369.08 15.07 5.56 5.56 Total: 0.00 -10.72 369.08 -13.66 -24.38 By element: Atomic # 1 Polarization: -6.21 SS G_CDS: -5.44 Total: -11.65 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -5.66 Total: -6.71 kcal Atomic # 7 Polarization: 1.54 SS G_CDS: -0.02 Total: 1.52 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: -2.41 Total: -10.48 kcal Atomic # 14 Polarization: -1.40 SS G_CDS: -5.07 Total: -6.47 kcal Atomic # 16 Polarization: 4.46 SS G_CDS: -0.61 Total: 3.85 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -10.72 -13.66 -24.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9705154_13421422.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.995 kcal (2) G-P(sol) polarization free energy of solvation -10.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds