Wall clock time and date at job start Mon Mar 8 2021 12:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86303 * 109.46993 * 2 1 4 4 C 1.50699 * 109.46595 * 239.99985 * 2 1 3 5 5 C 1.38205 * 120.00320 * 282.56598 * 4 2 1 6 6 S 1.76205 * 119.99983 * 0.02562 * 5 4 2 7 7 O 1.42103 * 106.40239 * 182.51733 * 6 5 4 8 8 O 1.42099 * 106.40211 * 315.43637 * 6 5 4 9 9 N 1.65602 * 107.21583 * 68.97447 * 6 5 4 10 10 C 1.46502 * 119.99921 * 63.90879 * 9 6 5 11 11 H 1.09003 * 112.84722 * 13.32265 * 10 9 6 12 12 C 1.53775 * 113.61358 * 144.51412 * 10 9 6 13 13 C 1.53778 * 87.08262 * 89.11654 * 12 10 9 14 14 H 1.09002 * 113.61544 * 270.80163 * 13 12 10 15 15 C 1.50699 * 113.61998 * 139.97896 * 13 12 10 16 16 C 1.38235 * 119.99910 * 299.73073 * 15 13 12 17 17 C 1.38236 * 119.99678 * 179.78310 * 16 15 13 18 18 C 1.38232 * 120.00212 * 0.44289 * 17 16 15 19 19 C 1.38234 * 120.00082 * 359.80794 * 18 17 16 20 20 C 1.38233 * 119.99958 * 119.99644 * 15 13 12 21 21 C 1.53777 * 113.61363 * 242.12438 * 10 9 6 22 22 C 1.38262 * 120.00382 * 179.83368 * 5 4 2 23 23 C 1.38214 * 119.99362 * 0.40695 * 22 5 4 24 24 C 1.38258 * 120.00153 * 359.52993 * 23 22 5 25 25 C 1.38212 * 120.00078 * 0.27801 * 24 23 22 26 26 H 0.96705 * 114.00039 * 185.49077 * 1 2 3 27 27 H 1.08996 * 109.47221 * 120.00118 * 2 1 3 28 28 H 1.48492 * 109.99851 * 58.68516 * 3 2 1 29 29 H 1.48503 * 109.99631 * 180.02562 * 3 2 1 30 30 H 0.96999 * 119.99926 * 243.90335 * 9 6 5 31 31 H 1.08999 * 113.61594 * 203.66298 * 12 10 9 32 32 H 1.09003 * 113.61917 * 334.57009 * 12 10 9 33 33 H 1.08001 * 120.00096 * 359.97438 * 16 15 13 34 34 H 1.08005 * 119.99752 * 180.27484 * 17 16 15 35 35 H 1.07998 * 119.99917 * 179.83277 * 18 17 16 36 36 H 1.07996 * 119.99943 * 179.97438 * 19 18 17 37 37 H 1.07997 * 120.00115 * 359.97438 * 20 15 13 38 38 H 1.08996 * 113.61554 * 25.42521 * 21 10 9 39 39 H 1.08996 * 113.61629 * 156.33635 * 21 10 9 40 40 H 1.07997 * 120.00444 * 180.21100 * 22 5 4 41 41 H 1.08003 * 119.99844 * 179.80801 * 23 22 5 42 42 H 1.08003 * 119.99554 * 180.25748 * 24 23 22 43 43 H 1.07993 * 119.99403 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9312 -0.7104 -1.2305 5 6 1.9160 -2.0913 -1.2858 6 16 1.3087 -3.0212 0.0821 7 8 1.4792 -4.3908 -0.2563 8 8 1.8697 -2.4331 1.2478 9 7 -0.3244 -2.7600 0.1661 10 6 -1.1940 -3.2013 -0.9272 11 1 -0.6945 -3.8816 -1.6170 12 6 -2.5696 -3.7018 -0.4563 13 6 -3.0552 -2.2484 -0.5857 14 1 -2.9184 -1.6600 0.3216 15 6 -4.4430 -2.1243 -1.1599 16 6 -4.7132 -2.6098 -2.4257 17 6 -5.9873 -2.5000 -2.9506 18 6 -6.9889 -1.8965 -2.2134 19 6 -6.7174 -1.4064 -0.9497 20 6 -5.4444 -1.5201 -0.4230 21 6 -1.9367 -2.0505 -1.6264 22 6 2.3735 -2.7430 -2.4161 23 6 2.8540 -2.0137 -3.4874 24 6 2.8680 -0.6322 -3.4325 25 6 2.4069 0.0193 -2.3042 26 1 -0.3933 -0.8794 0.0845 27 1 1.7923 -0.5138 0.8899 28 1 1.5355 2.4770 1.1921 29 1 3.5349 1.7701 -0.0006 30 1 -0.7052 -2.3148 0.9393 31 1 -3.0485 -4.3861 -1.1567 32 1 -2.5719 -4.0733 0.5684 33 1 -3.9297 -3.0777 -3.0032 34 1 -6.1995 -2.8833 -3.9378 35 1 -7.9836 -1.8083 -2.6246 36 1 -7.4999 -0.9345 -0.3740 37 1 -5.2323 -1.1374 0.5643 38 1 -1.4283 -1.0898 -1.5455 39 1 -2.2428 -2.2841 -2.6460 40 1 2.3585 -3.8219 -2.4607 41 1 3.2143 -2.5228 -4.3691 42 1 3.2395 -0.0623 -4.2713 43 1 2.4182 1.0983 -2.2613 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_9705154_2726874.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:34:34 Heat of formation + Delta-G solvation = -7.028462 kcal Electronic energy + Delta-G solvation = -28969.626174 eV Core-core repulsion = 25074.694459 eV Total energy + Delta-G solvation = -3894.931715 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.107 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.29437 -40.71208 -39.20858 -38.87948 -37.55607 -37.27862 -34.47120 -32.86697 -32.43530 -31.80518 -31.35118 -27.09852 -26.60584 -26.06035 -24.44704 -23.52735 -22.98342 -22.49154 -21.13334 -20.24938 -19.67586 -18.95675 -18.03052 -17.83658 -17.44728 -17.14645 -16.70518 -16.23117 -16.12002 -15.91930 -15.86660 -15.42217 -15.12494 -15.02480 -14.78568 -14.61312 -14.29477 -14.08753 -13.81843 -13.69475 -13.64002 -13.52079 -13.43913 -13.39853 -13.24404 -12.83569 -12.54832 -12.33931 -12.15357 -12.09866 -11.76347 -11.65590 -11.50472 -11.22518 -11.14352 -10.62852 -10.49895 -10.05400 -9.77571 -9.50807 -4.99100 -0.98120 -0.36937 0.13012 0.47705 0.54274 1.22888 1.54051 1.65760 1.89756 2.24763 2.50246 2.87722 3.05213 3.31700 3.44235 3.48417 3.63663 3.68982 3.77242 3.88274 3.95558 4.02144 4.09743 4.15662 4.18991 4.25115 4.28660 4.33976 4.37478 4.56472 4.60125 4.66232 4.71797 4.78193 4.82528 4.94506 4.97863 5.02280 5.10130 5.16988 5.18086 5.22707 5.28844 5.39456 5.62598 5.66900 5.68761 5.74521 5.79762 6.16931 6.24375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.163 4.163 3 Si 0.829 3.171 4 C -0.023 4.023 5 C -0.680 4.680 6 S 2.696 3.304 7 O -0.973 6.973 8 O -0.985 6.985 9 N -1.093 6.093 10 C 0.115 3.885 11 H 0.119 0.881 12 C -0.128 4.128 13 C -0.075 4.075 14 H 0.102 0.898 15 C -0.075 4.075 16 C -0.124 4.124 17 C -0.129 4.129 18 C -0.139 4.139 19 C -0.132 4.132 20 C -0.132 4.132 21 C -0.148 4.148 22 C -0.029 4.029 23 C -0.135 4.135 24 C -0.048 4.048 25 C -0.137 4.137 26 H 0.359 0.641 27 H 0.102 0.898 28 H -0.289 1.289 29 H -0.265 1.265 30 H 0.427 0.573 31 H 0.108 0.892 32 H 0.082 0.918 33 H 0.140 0.860 34 H 0.135 0.865 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.083 0.917 39 H 0.112 0.888 40 H 0.151 0.849 41 H 0.163 0.837 42 H 0.171 0.829 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.857 1.851 -6.970 7.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.352 6.352 2 C -0.269 4.269 3 Si 0.729 3.271 4 C -0.025 4.025 5 C -0.770 4.770 6 S 2.790 3.210 7 O -0.963 6.963 8 O -0.975 6.975 9 N -0.859 5.859 10 C 0.008 3.992 11 H 0.137 0.863 12 C -0.167 4.167 13 C -0.093 4.093 14 H 0.121 0.879 15 C -0.075 4.075 16 C -0.142 4.142 17 C -0.147 4.147 18 C -0.157 4.157 19 C -0.150 4.150 20 C -0.150 4.150 21 C -0.187 4.187 22 C -0.049 4.049 23 C -0.154 4.154 24 C -0.066 4.066 25 C -0.155 4.155 26 H 0.216 0.784 27 H 0.119 0.881 28 H -0.217 1.217 29 H -0.190 1.190 30 H 0.267 0.733 31 H 0.126 0.874 32 H 0.100 0.900 33 H 0.157 0.843 34 H 0.153 0.847 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.102 0.898 39 H 0.130 0.870 40 H 0.168 0.832 41 H 0.180 0.820 42 H 0.188 0.812 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -0.761 2.405 -6.165 6.661 hybrid contribution -0.439 -1.085 0.943 1.503 sum -1.200 1.320 -5.222 5.518 Atomic orbital electron populations 1.86858 1.15986 1.35772 1.96585 1.26603 0.85805 1.17661 0.96836 0.92301 0.76532 0.72396 0.85895 1.20005 0.94373 0.91831 0.96289 1.30386 1.21006 1.06273 1.19288 1.01566 0.72607 0.73409 0.73468 1.93565 1.85266 1.32603 1.84863 1.93536 1.76956 1.78631 1.48379 1.55458 1.24871 1.75030 1.30495 1.21939 0.91720 0.97596 0.87921 0.86335 1.23423 0.93532 0.96128 1.03664 1.21661 0.90336 0.97946 0.99354 0.87949 1.19837 0.95217 0.97919 0.94567 1.21254 0.97256 1.00236 0.95434 1.21439 0.93408 0.99234 1.00622 1.21430 1.00150 0.99025 0.95133 1.21405 0.97315 1.00034 0.96263 1.21310 0.93278 0.99932 1.00467 1.23799 0.95815 0.99337 0.99708 1.21243 0.91633 1.01241 0.90764 1.21759 0.99529 0.94759 0.99349 1.21981 0.92050 0.94949 0.97602 1.21487 0.99768 1.01059 0.93179 0.78437 0.88129 1.21653 1.19049 0.73283 0.87392 0.89974 0.84255 0.84742 0.85198 0.85273 0.85428 0.89801 0.86991 0.83165 0.81950 0.81157 0.82062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.48 11.83 -148.98 -1.76 -3.25 16 2 C -0.16 -0.65 2.07 71.24 0.15 -0.50 16 3 Si 0.83 0.74 30.22 68.60 2.07 2.82 16 4 C -0.02 -0.05 5.25 -19.87 -0.10 -0.15 16 5 C -0.68 -1.71 5.87 22.27 0.13 -1.57 16 6 S 2.70 12.47 5.03 -56.49 -0.28 12.19 16 7 O -0.97 -8.83 16.55 -128.00 -2.12 -10.95 16 8 O -0.98 -10.54 15.18 -128.00 -1.94 -12.48 16 9 N -1.09 2.27 3.51 -167.20 -0.59 1.68 16 10 C 0.11 -0.54 4.49 45.51 0.20 -0.34 16 11 H 0.12 -0.71 7.81 -2.39 -0.02 -0.73 16 12 C -0.13 0.67 7.34 31.12 0.23 0.90 16 13 C -0.07 0.32 3.81 -10.92 -0.04 0.27 16 14 H 0.10 -0.51 8.05 -2.39 -0.02 -0.53 16 15 C -0.08 0.06 5.29 -19.87 -0.11 -0.05 16 16 C -0.12 0.17 8.63 22.27 0.19 0.37 16 17 C -0.13 0.03 10.05 22.27 0.22 0.25 16 18 C -0.14 -0.12 10.05 22.27 0.22 0.10 16 19 C -0.13 -0.17 10.05 22.27 0.22 0.05 16 20 C -0.13 -0.12 9.71 22.27 0.22 0.10 16 21 C -0.15 0.80 6.97 31.21 0.22 1.02 16 22 C -0.03 0.01 9.55 22.27 0.21 0.23 16 23 C -0.14 0.64 10.05 22.27 0.22 0.86 16 24 C -0.05 0.29 10.05 22.27 0.22 0.51 16 25 C -0.14 0.37 8.66 22.27 0.19 0.57 16 26 H 0.36 -0.30 3.10 -74.05 -0.23 -0.53 16 27 H 0.10 0.73 5.07 -2.39 -0.01 0.72 16 28 H -0.29 -2.09 7.11 99.48 0.71 -1.38 16 29 H -0.26 -0.91 7.11 99.48 0.71 -0.20 16 30 H 0.43 -2.15 7.65 -96.75 -0.74 -2.89 16 31 H 0.11 -0.68 7.73 -2.39 -0.02 -0.70 16 32 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 33 H 0.14 -0.79 6.64 -2.91 -0.02 -0.81 16 34 H 0.13 -0.50 8.06 -2.91 -0.02 -0.52 16 35 H 0.13 -0.27 8.06 -2.91 -0.02 -0.29 16 36 H 0.13 -0.19 8.06 -2.91 -0.02 -0.21 16 37 H 0.13 -0.20 8.05 -2.91 -0.02 -0.23 16 38 H 0.08 -0.32 6.22 -2.39 -0.01 -0.34 16 39 H 0.11 -0.83 6.30 -2.39 -0.02 -0.85 16 40 H 0.15 -0.31 7.34 -2.91 -0.02 -0.33 16 41 H 0.16 -1.64 8.06 -2.91 -0.02 -1.66 16 42 H 0.17 -2.14 8.06 -2.91 -0.02 -2.16 16 43 H 0.16 -1.29 5.21 -2.91 -0.02 -1.30 16 Total: 0.00 -20.88 352.00 -1.88 -22.76 By element: Atomic # 1 Polarization: -15.51 SS G_CDS: 0.13 Total: -15.38 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: 2.61 Total: 2.61 kcal Atomic # 7 Polarization: 2.27 SS G_CDS: -0.59 Total: 1.68 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -5.82 Total: -26.68 kcal Atomic # 14 Polarization: 0.74 SS G_CDS: 2.07 Total: 2.82 kcal Atomic # 16 Polarization: 12.47 SS G_CDS: -0.28 Total: 12.19 kcal Total: -20.88 -1.88 -22.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9705154_2726874.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.734 kcal (2) G-P(sol) polarization free energy of solvation -20.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds