Wall clock time and date at job start Mon Mar 8 2021 12:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86299 * 109.47081 * 2 1 4 4 C 1.50697 * 109.47593 * 120.00394 * 2 1 3 5 5 C 1.33386 * 125.20435 * 64.99535 * 4 2 1 6 6 C 1.38423 * 114.92254 * 180.02562 * 5 4 2 7 7 S 1.76195 * 122.54029 * 179.97438 * 6 5 4 8 8 O 1.42106 * 106.40243 * 336.45875 * 7 6 5 9 9 O 1.42101 * 106.40096 * 203.54139 * 7 6 5 10 10 N 1.65601 * 107.22113 * 89.99957 * 7 6 5 11 11 C 1.46492 * 119.99965 * 64.99998 * 10 7 6 12 12 H 1.09001 * 112.85185 * 13.80371 * 11 10 7 13 13 C 1.53786 * 113.61441 * 145.00156 * 11 10 7 14 14 C 1.53780 * 87.08158 * 89.11534 * 13 11 10 15 15 H 1.09001 * 113.61597 * 270.80387 * 14 13 11 16 16 C 1.50698 * 113.61510 * 139.97779 * 14 13 11 17 17 C 1.38219 * 119.99472 * 301.78623 * 16 14 13 18 18 C 1.38267 * 120.02187 * 180.29544 * 17 16 14 19 19 C 1.38188 * 120.01566 * 359.70318 * 18 17 16 20 20 C 1.38376 * 119.98792 * 0.02562 * 19 18 17 21 21 Cl 1.73601 * 120.01368 * 179.97438 * 20 19 18 22 22 C 1.38234 * 119.98955 * 121.52607 * 16 14 13 23 23 C 1.53784 * 87.17286 * 25.39183 * 14 13 11 24 24 C 1.33391 * 114.91756 * 0.25115 * 6 5 4 25 25 S 1.75881 * 109.59501 * 359.63186 * 24 6 5 26 26 H 0.96698 * 113.99883 * 59.99799 * 1 2 3 27 27 H 1.09002 * 109.46944 * 240.00280 * 2 1 3 28 28 H 1.48503 * 109.99911 * 60.00252 * 3 2 1 29 29 H 1.48501 * 110.00135 * 181.32184 * 3 2 1 30 30 H 1.07999 * 122.53837 * 0.02562 * 5 4 2 31 31 H 0.97000 * 119.99413 * 244.99849 * 10 7 6 32 32 H 1.08996 * 113.61556 * 334.56370 * 13 11 10 33 33 H 1.09004 * 113.60948 * 203.66355 * 13 11 10 34 34 H 1.07993 * 119.99135 * 359.97438 * 17 16 14 35 35 H 1.08002 * 119.99096 * 179.72514 * 18 17 16 36 36 H 1.08002 * 120.00842 * 180.02562 * 19 18 17 37 37 H 1.08002 * 120.01083 * 0.02562 * 22 16 14 38 38 H 1.08996 * 113.61700 * 89.15624 * 23 14 13 39 39 H 1.09002 * 113.61635 * 220.06205 * 23 14 13 40 40 H 1.08003 * 125.19527 * 179.75838 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9315 -0.7105 1.2303 5 6 1.7535 -2.0052 1.4972 6 6 2.3056 -2.4358 2.6913 7 16 2.1893 -4.1056 3.2415 8 8 1.0536 -4.6632 2.5944 9 8 2.3414 -4.0742 4.6540 10 7 3.5085 -4.9108 2.6469 11 6 4.8539 -4.5449 3.0963 12 1 4.8461 -3.9097 3.9821 13 6 5.8139 -5.7414 3.2047 14 6 6.1773 -5.4825 1.7331 15 1 5.5389 -6.0122 1.0259 16 6 7.6451 -5.6496 1.4353 17 6 8.5788 -4.8894 2.1141 18 6 9.9252 -5.0379 1.8370 19 6 10.3386 -5.9509 0.8856 20 6 9.4047 -6.7162 0.2097 21 17 9.9232 -7.8628 -0.9862 22 6 8.0577 -6.5670 0.4871 23 6 5.7585 -4.0212 1.9660 24 6 2.9274 -1.4896 3.3966 25 16 2.8416 0.0409 2.5344 26 1 -0.3933 0.4417 -0.7650 27 1 1.7924 -0.5138 -0.8900 28 1 1.5615 2.4679 1.2086 29 1 3.5346 1.7703 -0.0322 30 1 1.2192 -2.6673 0.8321 31 1 3.3903 -5.6248 2.0010 32 1 5.3086 -6.6932 3.3688 33 1 6.6416 -5.5760 3.8945 34 1 8.2562 -4.1755 2.8574 35 1 10.6541 -4.4405 2.3645 36 1 11.3904 -6.0670 0.6695 37 1 7.3283 -7.1637 -0.0405 38 1 6.5710 -3.3848 2.3165 39 1 5.2086 -3.5863 1.1315 40 1 3.4114 -1.6409 4.3502 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_9705210_15065232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:34:50 Heat of formation + Delta-G solvation = -19.049957 kcal Electronic energy + Delta-G solvation = -28015.542524 eV Core-core repulsion = 23849.441971 eV Total energy + Delta-G solvation = -4166.100552 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.025 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.25006 -39.47188 -39.33744 -38.43609 -37.55188 -37.39881 -37.09368 -34.30536 -32.03627 -31.94660 -31.26620 -27.25584 -26.64145 -26.13121 -24.90351 -23.72436 -22.75300 -21.34383 -20.65203 -20.08712 -19.06371 -18.73099 -18.46105 -18.02054 -17.87136 -17.07601 -16.63116 -16.37474 -16.27292 -15.94707 -15.56372 -15.51024 -14.96696 -14.70545 -14.55562 -14.45522 -14.30424 -14.21325 -14.14255 -13.95331 -13.55566 -13.40286 -13.37707 -13.28983 -12.95336 -12.72566 -12.64820 -12.57934 -12.50063 -12.23997 -12.18146 -11.92809 -11.69926 -11.64466 -11.20037 -10.59138 -10.48083 -10.21464 -9.94896 -9.85142 -9.59547 -5.24912 -0.86454 -0.57210 0.16904 0.26069 0.28836 0.51660 0.89591 1.14799 1.15890 1.53478 1.83620 1.96098 2.60612 2.61571 3.13339 3.38331 3.48133 3.62152 3.65897 3.71366 3.85292 3.89206 3.97262 4.04689 4.12979 4.15078 4.22337 4.31137 4.38500 4.44440 4.55043 4.66878 4.74864 4.81168 4.83273 4.95894 4.96553 4.98320 5.06463 5.10678 5.26679 5.38732 5.42562 5.60758 5.85868 5.99264 6.80892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.563 6.563 2 C -0.047 4.047 3 Si 0.754 3.246 4 C -0.198 4.198 5 C -0.050 4.050 6 C -0.688 4.688 7 S 2.731 3.269 8 O -0.984 6.984 9 O -0.977 6.977 10 N -1.084 6.084 11 C 0.116 3.884 12 H 0.118 0.882 13 C -0.130 4.130 14 C -0.074 4.074 15 H 0.105 0.895 16 C -0.059 4.059 17 C -0.114 4.114 18 C -0.107 4.107 19 C -0.129 4.129 20 C -0.049 4.049 21 Cl -0.084 7.084 22 C -0.121 4.121 23 C -0.143 4.143 24 C -0.076 4.076 25 S 0.125 5.875 26 H 0.407 0.593 27 H 0.110 0.890 28 H -0.279 1.279 29 H -0.264 1.264 30 H 0.159 0.841 31 H 0.429 0.571 32 H 0.081 0.919 33 H 0.109 0.891 34 H 0.153 0.847 35 H 0.152 0.848 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.111 0.889 39 H 0.079 0.921 40 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.603 4.786 -3.127 6.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.374 6.374 2 C -0.159 4.159 3 Si 0.657 3.343 4 C -0.315 4.315 5 C -0.079 4.079 6 C -0.788 4.788 7 S 2.819 3.181 8 O -0.975 6.975 9 O -0.967 6.967 10 N -0.846 5.846 11 C 0.008 3.992 12 H 0.136 0.864 13 C -0.169 4.169 14 C -0.092 4.092 15 H 0.123 0.877 16 C -0.059 4.059 17 C -0.132 4.132 18 C -0.125 4.125 19 C -0.148 4.148 20 C -0.075 4.075 21 Cl -0.055 7.055 22 C -0.140 4.140 23 C -0.182 4.182 24 C -0.214 4.214 25 S 0.389 5.611 26 H 0.259 0.741 27 H 0.128 0.872 28 H -0.206 1.206 29 H -0.189 1.189 30 H 0.176 0.824 31 H 0.267 0.733 32 H 0.099 0.901 33 H 0.127 0.873 34 H 0.170 0.830 35 H 0.170 0.830 36 H 0.155 0.845 37 H 0.153 0.847 38 H 0.129 0.871 39 H 0.097 0.903 40 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 4.084 6.248 -1.363 7.588 hybrid contribution -0.198 -1.898 -1.035 2.171 sum 3.885 4.349 -2.398 6.306 Atomic orbital electron populations 1.86478 1.16876 1.82472 1.51601 1.24225 0.86082 1.10524 0.95036 0.93749 0.79021 0.75595 0.85978 1.24059 1.08534 0.97236 1.01655 1.19714 0.97641 0.95404 0.95144 1.29945 1.16095 1.25713 1.07058 1.00745 0.72019 0.72505 0.72852 1.93573 1.49263 1.77513 1.77102 1.93579 1.86303 1.86968 1.29852 1.55060 1.19199 1.49504 1.60806 1.21909 0.80521 0.98734 0.98015 0.86432 1.23444 0.99021 0.98725 0.95710 1.21624 0.90990 0.98448 0.98149 0.87659 1.19829 0.96120 0.95009 0.94980 1.21428 0.92430 0.99495 0.99859 1.21435 0.96957 0.97395 0.96705 1.21299 0.99861 0.96533 0.97068 1.21150 0.94972 0.95921 0.95492 1.98383 1.91128 1.59695 1.56289 1.21137 0.93762 0.99797 0.99257 1.23687 0.99730 0.95702 0.99084 1.26224 0.97864 0.94756 1.02563 1.84550 1.51205 1.12385 1.12997 0.74123 0.87247 1.20552 1.18894 0.82368 0.73314 0.90074 0.87261 0.82957 0.83025 0.84535 0.84713 0.87096 0.90271 0.77375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.51 12.86 -148.98 -1.92 -1.40 16 2 C -0.05 0.10 2.95 71.23 0.21 0.31 16 3 Si 0.75 -2.95 30.98 68.60 2.13 -0.83 16 4 C -0.20 -0.56 5.73 24.59 0.14 -0.42 16 5 C -0.05 -0.17 9.59 21.22 0.20 0.03 16 6 C -0.69 -1.26 5.86 21.22 0.12 -1.13 16 7 S 2.73 6.96 5.77 -56.49 -0.33 6.64 16 8 O -0.98 -9.46 17.63 -128.00 -2.26 -11.71 16 9 O -0.98 -7.37 17.16 -128.00 -2.20 -9.56 16 10 N -1.08 5.10 5.73 -166.95 -0.96 4.14 16 11 C 0.12 -0.83 4.51 45.58 0.21 -0.63 16 12 H 0.12 -1.04 7.77 -2.39 -0.02 -1.06 16 13 C -0.13 0.98 7.33 31.12 0.23 1.21 16 14 C -0.07 0.51 3.80 -11.01 -0.04 0.47 16 15 H 0.11 -0.80 8.05 -2.39 -0.02 -0.82 16 16 C -0.06 0.21 5.29 -19.87 -0.11 0.10 16 17 C -0.11 0.58 8.53 22.27 0.19 0.77 16 18 C -0.11 0.38 10.05 22.26 0.22 0.61 16 19 C -0.13 0.02 9.83 22.29 0.22 0.24 16 20 C -0.05 -0.10 6.32 22.33 0.14 0.04 16 21 Cl -0.08 -0.31 28.96 -2.72 -0.08 -0.39 16 22 C -0.12 0.02 9.49 22.29 0.21 0.23 16 23 C -0.14 1.21 7.27 31.18 0.23 1.44 16 24 C -0.08 0.03 10.70 66.72 0.71 0.74 16 25 S 0.13 0.21 20.60 -56.49 -1.16 -0.95 16 26 H 0.41 -4.80 8.74 -74.06 -0.65 -5.45 16 27 H 0.11 -0.78 7.96 -2.39 -0.02 -0.79 16 28 H -0.28 -0.95 7.11 99.48 0.71 -0.25 16 29 H -0.26 0.01 7.11 99.48 0.71 0.71 16 30 H 0.16 0.41 7.96 -2.91 -0.02 0.38 16 31 H 0.43 -3.32 8.79 -96.75 -0.85 -4.17 16 32 H 0.08 -0.54 8.14 -2.39 -0.02 -0.56 16 33 H 0.11 -1.00 7.62 -2.39 -0.02 -1.02 16 34 H 0.15 -1.54 6.73 -2.91 -0.02 -1.56 16 35 H 0.15 -1.21 8.06 -2.91 -0.02 -1.23 16 36 H 0.14 -0.26 8.06 -2.91 -0.02 -0.28 16 37 H 0.13 -0.22 8.05 -2.91 -0.02 -0.25 16 38 H 0.11 -1.20 6.41 -2.39 -0.02 -1.22 16 39 H 0.08 -0.60 8.14 -2.39 -0.02 -0.62 16 40 H 0.21 -1.24 8.00 -2.91 -0.02 -1.26 16 Total: 0.00 -25.27 379.62 -4.22 -29.49 By element: Atomic # 1 Polarization: -19.10 SS G_CDS: -0.35 Total: -19.45 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: 2.89 Total: 4.02 kcal Atomic # 7 Polarization: 5.10 SS G_CDS: -0.96 Total: 4.14 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -6.37 Total: -22.68 kcal Atomic # 14 Polarization: -2.95 SS G_CDS: 2.13 Total: -0.83 kcal Atomic # 16 Polarization: 7.18 SS G_CDS: -1.49 Total: 5.69 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -0.08 Total: -0.39 kcal Total: -25.27 -4.22 -29.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9705210_15065232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.442 kcal (2) G-P(sol) polarization free energy of solvation -25.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds