Wall clock time and date at job start Mon Mar 8 2021 12:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50707 * 109.46442 * 119.99698 * 2 1 3 5 5 C 1.38236 * 119.99632 * 244.72513 * 4 2 1 6 6 C 1.38238 * 119.99657 * 179.79236 * 5 4 2 7 7 C 1.38229 * 119.99820 * 0.43889 * 6 5 4 8 8 S 1.76200 * 119.99922 * 179.83386 * 7 6 5 9 9 O 1.42101 * 106.40239 * 23.52187 * 8 7 6 10 10 O 1.42101 * 106.40286 * 156.44124 * 8 7 6 11 11 N 1.65602 * 107.22180 * 269.98076 * 8 7 6 12 12 C 1.46498 * 119.99711 * 64.99709 * 11 8 7 13 13 H 1.08996 * 112.85146 * 13.80394 * 12 11 8 14 14 C 1.53785 * 113.61330 * 145.00259 * 12 11 8 15 15 C 1.53788 * 87.07877 * 89.11723 * 14 12 11 16 16 H 1.09002 * 113.61151 * 270.79486 * 15 14 12 17 17 C 1.50697 * 113.61119 * 139.98474 * 15 14 12 18 18 C 1.38226 * 119.98703 * 299.72082 * 17 15 14 19 19 C 1.38273 * 120.04919 * 179.73156 * 18 17 15 20 20 C 1.38175 * 120.02598 * 0.54383 * 19 18 17 21 21 C 1.38484 * 119.97625 * 359.73196 * 20 19 18 22 22 F 1.35093 * 120.02851 * 179.97438 * 21 20 19 23 23 C 1.38217 * 119.98734 * 119.99988 * 17 15 14 24 24 C 1.53783 * 87.08175 * 25.43277 * 15 14 12 25 25 C 1.38233 * 120.00244 * 359.81636 * 7 6 5 26 26 C 1.38234 * 120.00312 * 359.97345 * 25 7 6 27 27 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 28 28 H 1.08999 * 109.47293 * 239.99660 * 2 1 3 29 29 H 1.48501 * 109.99918 * 178.67685 * 3 2 1 30 30 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 31 31 H 1.08000 * 120.00191 * 0.02562 * 5 4 2 32 32 H 1.08000 * 119.99923 * 180.27468 * 6 5 4 33 33 H 0.97001 * 120.00361 * 245.00225 * 11 8 7 34 34 H 1.09000 * 113.61678 * 203.65983 * 14 12 11 35 35 H 1.09000 * 113.61398 * 334.56897 * 14 12 11 36 36 H 1.07994 * 119.97250 * 0.02562 * 18 17 15 37 37 H 1.07998 * 119.98636 * 180.27511 * 19 18 17 38 38 H 1.07993 * 120.01398 * 179.70319 * 20 19 18 39 39 H 1.08003 * 120.01711 * 0.02562 * 23 17 15 40 40 H 1.09001 * 113.61087 * 220.01881 * 24 15 14 41 41 H 1.08998 * 113.61041 * 89.12045 * 24 15 14 42 42 H 1.08010 * 120.00188 * 179.97438 * 25 7 6 43 43 H 1.07999 * 120.00412 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 1.2306 5 6 2.6435 -0.0134 2.1887 6 6 3.1004 -0.6641 3.3195 7 6 2.8529 -2.0136 3.4879 8 16 3.4391 -2.8439 4.9272 9 8 3.6062 -1.8467 5.9256 10 8 2.6087 -3.9842 5.0988 11 7 4.9537 -3.4166 4.5802 12 6 6.0478 -2.4794 4.3136 13 1 5.8088 -1.4563 4.6035 14 6 7.4130 -2.9632 4.8305 15 6 7.5977 -3.6497 3.4667 16 1 7.2087 -4.6674 3.4340 17 6 8.9981 -3.5406 2.9208 18 6 9.5470 -2.2970 2.6705 19 6 10.8339 -2.1953 2.1748 20 6 11.5684 -3.3372 1.9186 21 6 11.0174 -4.5839 2.1637 22 9 11.7344 -5.7010 1.9131 23 6 9.7309 -4.6843 2.6653 24 6 6.6302 -2.5997 2.8955 25 6 2.1452 -2.7117 2.5273 26 6 1.6845 -2.0602 1.3985 27 1 -0.3934 0.4418 0.7650 28 1 1.7924 -0.5139 -0.8899 29 1 3.5346 1.7702 0.0322 30 1 1.5616 2.4678 -1.2086 31 1 2.8397 1.0402 2.0555 32 1 3.6530 -0.1186 4.0702 33 1 5.1165 -4.3724 4.5533 34 1 8.1222 -2.1557 5.0124 35 1 7.3417 -3.6613 5.6646 36 1 8.9722 -1.4041 2.8666 37 1 11.2634 -1.2230 1.9838 38 1 12.5717 -3.2577 1.5270 39 1 9.3000 -5.6561 2.8563 40 1 5.9270 -3.0043 2.1675 41 1 7.1254 -1.6928 2.5484 42 1 1.9522 -3.7662 2.6587 43 1 1.1313 -2.6054 0.6482 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_9705266_13421422.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:35:04 Heat of formation + Delta-G solvation = -65.179372 kcal Electronic energy + Delta-G solvation = -29797.834498 eV Core-core repulsion = 25430.927194 eV Total energy + Delta-G solvation = -4366.907303 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.098 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -49.84018 -41.39268 -40.79045 -39.20927 -38.27732 -37.82133 -36.91666 -34.43999 -33.11188 -32.31457 -32.06803 -31.18195 -27.34997 -26.90213 -26.37981 -24.21226 -23.85660 -23.09172 -22.96819 -21.01010 -20.44729 -19.42285 -18.81164 -18.30383 -18.16157 -17.42835 -17.34122 -17.15209 -16.85786 -16.61439 -16.54895 -16.15486 -15.95736 -15.90910 -15.64613 -15.29453 -14.90137 -14.78093 -14.61670 -14.44852 -14.15152 -13.98703 -13.89009 -13.78927 -13.49371 -13.27836 -13.15153 -13.08993 -12.90814 -12.73423 -12.61674 -12.48207 -12.08439 -12.03194 -11.89992 -11.82564 -11.45272 -10.73269 -10.71490 -10.44202 -10.25513 -9.99380 -9.67491 -5.19626 -0.79170 -0.43642 0.08128 0.08853 0.15088 1.07968 1.46290 1.76990 1.81748 2.23917 2.47507 2.67516 3.13049 3.17190 3.22227 3.24758 3.37009 3.40824 3.50268 3.63043 3.67026 3.68232 3.78108 3.88674 3.95375 4.00467 4.04377 4.10810 4.21418 4.26096 4.31181 4.45550 4.48699 4.52567 4.67187 4.70163 4.76786 4.78739 4.82335 4.83477 4.87707 5.00229 5.08989 5.13697 5.17312 5.26509 5.44407 5.58284 5.75597 5.84462 6.35706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.535 6.535 2 C -0.078 4.078 3 Si 0.689 3.311 4 C -0.063 4.063 5 C -0.137 4.137 6 C -0.015 4.015 7 C -0.673 4.673 8 S 2.696 3.304 9 O -0.950 6.950 10 O -0.953 6.953 11 N -1.098 6.098 12 C 0.123 3.877 13 H 0.110 0.890 14 C -0.132 4.132 15 C -0.076 4.076 16 H 0.102 0.898 17 C -0.042 4.042 18 C -0.129 4.129 19 C -0.087 4.087 20 C -0.159 4.159 21 C 0.102 3.898 22 F -0.139 7.139 23 C -0.151 4.151 24 C -0.148 4.148 25 C -0.016 4.016 26 C -0.114 4.114 27 H 0.381 0.619 28 H 0.119 0.881 29 H -0.254 1.254 30 H -0.251 1.251 31 H 0.137 0.863 32 H 0.145 0.855 33 H 0.421 0.579 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.131 0.869 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.079 0.921 41 H 0.099 0.901 42 H 0.143 0.857 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.259 3.864 -0.933 4.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.341 6.341 2 C -0.188 4.188 3 Si 0.590 3.410 4 C -0.063 4.063 5 C -0.155 4.155 6 C -0.034 4.034 7 C -0.760 4.760 8 S 2.785 3.215 9 O -0.940 6.940 10 O -0.943 6.943 11 N -0.856 5.856 12 C 0.015 3.985 13 H 0.128 0.872 14 C -0.171 4.171 15 C -0.094 4.094 16 H 0.120 0.880 17 C -0.043 4.043 18 C -0.147 4.147 19 C -0.105 4.105 20 C -0.177 4.177 21 C 0.082 3.918 22 F -0.118 7.118 23 C -0.170 4.170 24 C -0.188 4.188 25 C -0.035 4.035 26 C -0.132 4.132 27 H 0.229 0.771 28 H 0.136 0.864 29 H -0.179 1.179 30 H -0.176 1.176 31 H 0.154 0.846 32 H 0.163 0.837 33 H 0.256 0.744 34 H 0.119 0.881 35 H 0.102 0.898 36 H 0.149 0.851 37 H 0.152 0.848 38 H 0.153 0.847 39 H 0.152 0.848 40 H 0.098 0.902 41 H 0.117 0.883 42 H 0.161 0.839 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.364 4.205 -1.127 4.562 hybrid contribution 0.415 -1.124 -1.109 1.633 sum 1.779 3.081 -2.236 4.203 Atomic orbital electron populations 1.86541 1.16496 1.81701 1.49329 1.25230 0.85728 1.10597 0.97292 0.94664 0.81149 0.77566 0.87647 1.20750 0.94901 0.94927 0.95755 1.21137 0.99974 0.99839 0.94573 1.20898 0.94250 0.92053 0.96188 1.30976 1.16083 1.06400 1.22533 1.01932 0.72168 0.73619 0.73789 1.93619 1.85380 1.60794 1.54184 1.93628 1.65438 1.49974 1.85301 1.55371 1.25100 1.16675 1.88447 1.21689 0.87315 0.93101 0.96398 0.87222 1.23416 0.95805 1.01203 0.96657 1.21604 0.91125 1.00150 0.96503 0.87981 1.19527 0.95325 0.92331 0.97074 1.21091 0.95644 0.97387 1.00612 1.21042 0.93995 0.98240 0.97180 1.21217 1.01694 0.91209 1.03616 1.17747 0.90648 0.82615 1.00754 1.91523 1.77653 1.50665 1.91925 1.21069 0.93369 0.99990 1.02588 1.23650 0.98406 0.99801 0.96901 1.20997 0.91242 1.00112 0.91180 1.21193 0.99862 0.94000 0.98182 0.77096 0.86380 1.17911 1.17562 0.84561 0.83715 0.74416 0.88114 0.89837 0.85134 0.84837 0.84703 0.84771 0.90181 0.88263 0.83925 0.84571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.49 12.83 -35.23 -0.45 0.04 16 2 C -0.08 0.13 2.80 36.01 0.10 0.23 16 3 Si 0.69 -1.68 29.80 -169.99 -5.07 -6.75 16 4 C -0.06 0.08 5.35 -104.62 -0.56 -0.48 16 5 C -0.14 0.28 8.67 -39.58 -0.34 -0.06 16 6 C -0.01 0.02 9.52 -39.58 -0.38 -0.35 16 7 C -0.67 0.44 5.95 -39.59 -0.24 0.20 16 8 S 2.70 0.28 5.71 -107.50 -0.61 -0.33 16 9 O -0.95 -2.64 16.80 -57.17 -0.96 -3.60 16 10 O -0.95 -3.05 17.28 -57.17 -0.99 -4.04 16 11 N -1.10 3.03 5.73 -4.20 -0.02 3.00 16 12 C 0.12 -0.42 4.51 -67.12 -0.30 -0.73 16 13 H 0.11 -0.46 7.77 -51.93 -0.40 -0.86 16 14 C -0.13 0.46 7.33 -25.91 -0.19 0.27 16 15 C -0.08 0.24 3.80 -90.96 -0.35 -0.11 16 16 H 0.10 -0.38 8.06 -51.93 -0.42 -0.79 16 17 C -0.04 0.06 5.29 -104.64 -0.55 -0.49 16 18 C -0.13 0.25 8.62 -39.57 -0.34 -0.09 16 19 C -0.09 0.12 10.04 -39.59 -0.40 -0.28 16 20 C -0.16 -0.01 10.03 -39.51 -0.40 -0.40 16 21 C 0.10 0.14 7.30 -39.41 -0.29 -0.15 16 22 F -0.14 -0.41 17.27 2.25 0.04 -0.37 16 23 C -0.15 0.00 9.69 -39.51 -0.38 -0.39 16 24 C -0.15 0.56 7.25 -25.92 -0.19 0.37 16 25 C -0.02 0.01 9.52 -39.58 -0.38 -0.37 16 26 C -0.11 0.08 9.69 -39.58 -0.38 -0.30 16 27 H 0.38 -1.78 8.70 45.56 0.40 -1.38 16 28 H 0.12 -0.17 7.96 -51.93 -0.41 -0.59 16 29 H -0.25 0.12 7.11 56.52 0.40 0.52 16 30 H -0.25 -0.25 7.11 56.52 0.40 0.15 16 31 H 0.14 -0.58 4.91 -52.49 -0.26 -0.84 16 32 H 0.15 -0.46 7.62 -52.49 -0.40 -0.86 16 33 H 0.42 -1.78 8.79 -34.48 -0.30 -2.09 16 34 H 0.10 -0.40 7.73 -51.93 -0.40 -0.80 16 35 H 0.08 -0.27 8.14 -51.93 -0.42 -0.69 16 36 H 0.13 -0.52 6.64 -52.49 -0.35 -0.87 16 37 H 0.13 -0.45 8.06 -52.49 -0.42 -0.88 16 38 H 0.14 -0.15 8.06 -52.49 -0.42 -0.58 16 39 H 0.13 -0.15 8.05 -52.48 -0.42 -0.57 16 40 H 0.08 -0.28 8.14 -51.93 -0.42 -0.70 16 41 H 0.10 -0.45 6.29 -51.93 -0.33 -0.78 16 42 H 0.14 -0.22 7.62 -52.48 -0.40 -0.62 16 43 H 0.14 -0.20 8.06 -52.49 -0.42 -0.62 16 LS Contribution 375.60 15.07 5.66 5.66 Total: 0.00 -10.39 375.60 -12.98 -23.37 By element: Atomic # 1 Polarization: -8.85 SS G_CDS: -5.01 Total: -13.86 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -5.56 Total: -3.13 kcal Atomic # 7 Polarization: 3.03 SS G_CDS: -0.02 Total: 3.00 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: -2.40 Total: -7.59 kcal Atomic # 9 Polarization: -0.41 SS G_CDS: 0.04 Total: -0.37 kcal Atomic # 14 Polarization: -1.68 SS G_CDS: -5.07 Total: -6.75 kcal Atomic # 16 Polarization: 0.28 SS G_CDS: -0.61 Total: -0.33 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -10.39 -12.98 -23.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9705266_13421422.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.810 kcal (2) G-P(sol) polarization free energy of solvation -10.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds