Wall clock time and date at job start Mon Mar 8 2021 12:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33390 * 125.20318 * 2 1 4 4 C 1.50702 * 122.53649 * 0.02562 * 3 2 1 5 5 O 1.42900 * 109.47046 * 74.89151 * 4 3 2 6 6 Si 1.86296 * 109.47507 * 314.88984 * 4 3 2 7 7 C 1.38420 * 114.92464 * 179.75402 * 3 2 1 8 8 S 1.76195 * 122.54335 * 180.22370 * 7 3 2 9 9 O 1.42106 * 106.40060 * 24.52713 * 8 7 3 10 10 O 1.42097 * 106.40191 * 157.44622 * 8 7 3 11 11 N 1.65602 * 107.21627 * 270.98848 * 8 7 3 12 12 C 1.46499 * 119.99993 * 66.56267 * 11 8 7 13 13 H 1.08993 * 112.85172 * 14.42122 * 12 11 8 14 14 C 1.53785 * 113.61198 * 145.61588 * 12 11 8 15 15 C 1.53786 * 87.07853 * 89.11400 * 14 12 11 16 16 H 1.08992 * 113.61875 * 270.79385 * 15 14 12 17 17 C 1.50709 * 113.61089 * 139.97642 * 15 14 12 18 18 C 1.38170 * 119.99090 * 299.72893 * 17 15 14 19 19 C 1.38475 * 119.97373 * 179.72543 * 18 17 15 20 20 F 1.35111 * 120.02604 * 180.25383 * 19 18 17 21 21 C 1.38439 * 119.95081 * 0.54512 * 19 18 17 22 22 C 1.38218 * 119.97190 * 359.73120 * 21 19 18 23 23 C 1.38219 * 120.02687 * 359.97438 * 22 21 19 24 24 C 1.53783 * 113.61405 * 243.11417 * 12 11 8 25 25 C 1.33394 * 114.91488 * 0.24594 * 7 3 2 26 26 C 1.50706 * 125.19748 * 179.97438 * 25 7 3 27 27 S 1.75878 * 109.59890 * 359.97438 * 25 7 3 28 28 H 1.08999 * 109.46865 * 88.03069 * 1 2 3 29 29 H 1.09005 * 109.47193 * 208.03372 * 1 2 3 30 30 H 1.08998 * 109.47233 * 328.03134 * 1 2 3 31 31 H 1.08999 * 109.47081 * 194.88484 * 4 3 2 32 32 H 0.96696 * 114.00035 * 64.99802 * 5 4 3 33 33 H 1.48496 * 110.00111 * 175.37346 * 6 4 3 34 34 H 1.48497 * 110.00004 * 296.68994 * 6 4 3 35 35 H 0.97006 * 119.99535 * 246.56124 * 11 8 7 36 36 H 1.09002 * 113.61457 * 203.66108 * 14 12 11 37 37 H 1.08998 * 113.61600 * 334.57355 * 14 12 11 38 38 H 1.08005 * 120.01216 * 0.02562 * 18 17 15 39 39 H 1.08002 * 120.01232 * 179.74364 * 21 19 18 40 40 H 1.08002 * 119.98492 * 180.02562 * 22 21 19 41 41 H 1.08000 * 119.97981 * 180.02562 * 23 22 21 42 42 H 1.08996 * 113.61054 * 25.43387 * 24 12 11 43 43 H 1.08999 * 113.61420 * 156.33706 * 24 12 11 44 44 H 1.08997 * 109.47416 * 84.44138 * 26 25 7 45 45 H 1.08999 * 109.46616 * 204.43969 * 26 25 7 46 46 H 1.08996 * 109.47018 * 324.43594 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 1.7051 2.4846 0.0006 5 8 1.2001 2.7921 1.3015 6 14 0.3222 2.5902 -1.2432 7 6 3.6379 0.8430 0.0054 8 16 4.8356 2.1353 0.0122 9 8 4.1962 3.2718 0.5770 10 8 6.0295 1.5732 0.5393 11 7 5.1554 2.5155 -1.5675 12 6 4.1142 3.1232 -2.3999 13 1 3.2739 3.5013 -1.8178 14 6 4.6566 4.1323 -3.4258 15 6 4.8121 2.9464 -4.3926 16 1 5.7780 2.4470 -4.3191 17 6 4.4279 3.2713 -5.8132 18 6 3.1421 3.6857 -6.1033 19 6 2.7910 3.9896 -7.4079 20 9 1.5354 4.3997 -7.6921 21 6 3.7257 3.8670 -8.4217 22 6 5.0098 3.4468 -8.1298 23 6 5.3608 3.1496 -6.8264 24 6 3.6950 2.2520 -3.5958 25 6 3.9750 -0.4477 0.0046 26 6 5.3861 -0.9770 0.0091 27 16 2.5210 -1.4372 -0.0026 28 1 -0.3633 0.0353 -1.0271 29 1 -0.3634 -0.9071 0.4830 30 1 -0.3633 0.8718 0.5441 31 1 2.4865 3.1972 -0.2635 32 1 1.8799 2.8314 1.9881 33 1 -0.3224 3.9262 -1.1739 34 1 0.8496 2.3511 -2.6106 35 1 6.0321 2.3359 -1.9417 36 1 3.9179 4.8656 -3.7496 37 1 5.6043 4.5849 -3.1341 38 1 2.4125 3.7771 -5.3122 39 1 3.4518 4.0998 -9.4401 40 1 5.7393 3.3516 -8.9205 41 1 6.3645 2.8218 -6.5992 42 1 3.8664 1.1867 -3.4413 43 1 2.6935 2.4712 -3.9660 44 1 5.7573 -1.0131 1.0333 45 1 5.3992 -1.9799 -0.4177 46 1 6.0221 -0.3209 -0.5850 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_9705266_15065288.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:35:21 Heat of formation + Delta-G solvation = -60.019182 kcal Electronic energy + Delta-G solvation = -34279.715287 eV Core-core repulsion = 29691.108754 eV Total energy + Delta-G solvation = -4588.606532 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 398.085 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -49.84581 -41.43252 -40.26883 -39.24810 -38.55157 -37.03127 -36.88850 -34.52745 -34.36629 -31.72345 -31.54051 -30.91101 -28.05910 -26.97547 -26.42705 -25.91968 -23.87653 -23.27099 -22.94354 -21.12193 -20.56873 -20.03414 -19.24260 -18.69135 -18.33553 -18.13783 -17.44905 -17.34740 -17.12677 -16.82741 -16.55592 -16.20742 -16.08170 -15.89957 -15.38454 -15.29104 -15.07881 -14.95877 -14.74531 -14.55546 -14.45368 -14.26341 -14.12947 -14.00815 -13.79497 -13.61281 -13.49053 -13.40047 -13.27103 -13.22047 -13.01273 -12.91212 -12.77550 -12.54340 -12.48323 -12.18458 -12.05155 -11.98766 -11.74008 -11.46676 -11.17298 -10.89156 -10.74952 -10.03044 -9.99547 -9.68956 -9.55392 -4.84353 -0.85286 -0.45933 0.08722 0.13522 0.34629 0.66913 0.85316 1.36608 1.59646 1.86634 2.00468 2.46736 2.57470 3.08576 3.14574 3.25486 3.36786 3.40573 3.43614 3.62740 3.66621 3.72155 3.84504 3.89109 3.92351 3.96540 4.00579 4.11050 4.15596 4.18076 4.27595 4.37160 4.40219 4.44013 4.51139 4.53975 4.58429 4.66855 4.74903 4.77066 4.79048 4.81973 4.91909 4.99330 5.01812 5.06871 5.13392 5.20724 5.27745 5.42990 5.70379 5.83635 6.64522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.167 4.167 3 C -0.078 4.078 4 C -0.084 4.084 5 O -0.528 6.528 6 Si 0.703 3.297 7 C -0.686 4.686 8 S 2.705 3.295 9 O -0.949 6.949 10 O -0.949 6.949 11 N -1.096 6.096 12 C 0.117 3.883 13 H 0.103 0.897 14 C -0.132 4.132 15 C -0.072 4.072 16 H 0.106 0.894 17 C -0.043 4.043 18 C -0.154 4.154 19 C 0.103 3.897 20 F -0.139 7.139 21 C -0.158 4.158 22 C -0.086 4.086 23 C -0.126 4.126 24 C -0.151 4.151 25 C -0.051 4.051 26 C -0.109 4.109 27 S 0.162 5.838 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.371 0.629 33 H -0.243 1.243 34 H -0.239 1.239 35 H 0.421 0.579 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.134 0.866 41 H 0.130 0.870 42 H 0.083 0.917 43 H 0.098 0.902 44 H 0.101 0.899 45 H 0.081 0.919 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.744 -4.283 -3.072 5.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.285 4.285 3 C -0.088 4.088 4 C -0.195 4.195 5 O -0.333 6.333 6 Si 0.600 3.400 7 C -0.786 4.786 8 S 2.793 3.207 9 O -0.939 6.939 10 O -0.939 6.939 11 N -0.854 5.854 12 C 0.009 3.991 13 H 0.121 0.879 14 C -0.171 4.171 15 C -0.091 4.091 16 H 0.124 0.876 17 C -0.043 4.043 18 C -0.173 4.173 19 C 0.083 3.917 20 F -0.117 7.117 21 C -0.176 4.176 22 C -0.104 4.104 23 C -0.144 4.144 24 C -0.190 4.190 25 C -0.172 4.172 26 C -0.168 4.168 27 S 0.429 5.571 28 H 0.108 0.892 29 H 0.104 0.896 30 H 0.119 0.881 31 H 0.113 0.887 32 H 0.219 0.781 33 H -0.167 1.167 34 H -0.163 1.163 35 H 0.256 0.744 36 H 0.118 0.882 37 H 0.104 0.896 38 H 0.152 0.848 39 H 0.154 0.846 40 H 0.152 0.848 41 H 0.148 0.852 42 H 0.101 0.899 43 H 0.117 0.883 44 H 0.120 0.880 45 H 0.100 0.900 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.297 -5.008 -3.281 5.995 hybrid contribution 1.598 1.295 0.052 2.058 sum 1.302 -3.713 -3.229 5.090 Atomic orbital electron populations 1.20408 0.87022 1.04372 1.03699 1.24405 1.00438 0.94767 1.08868 1.18599 0.90095 0.97262 1.02854 1.25734 1.08387 0.91229 0.94142 1.86648 1.37322 1.92804 1.16545 0.93175 0.84956 0.86829 0.75071 1.29481 1.11928 1.13264 1.23881 1.01632 0.73206 0.73601 0.72258 1.93555 1.76591 1.48394 1.75309 1.93621 1.44767 1.79289 1.76268 1.55339 1.21673 1.76904 1.31504 1.21794 0.90272 0.95004 0.91999 0.87916 1.23426 1.03186 0.96229 0.94297 1.21591 0.99899 0.97889 0.89682 0.87606 1.19505 0.92523 0.97175 0.95102 1.20983 0.97689 1.03360 0.95262 1.17705 0.80032 0.99979 0.93946 1.91530 1.38038 1.87854 1.94300 1.21221 0.93769 1.03284 0.99359 1.21058 0.95458 0.96953 0.96971 1.21147 0.99753 1.01095 0.92393 1.23701 0.99376 1.00598 0.95323 1.24554 1.00763 0.95047 0.96871 1.20870 0.88188 1.02178 1.05530 1.84421 0.95057 1.08468 1.69202 0.89198 0.89562 0.88145 0.88660 0.78145 1.16733 1.16296 0.74353 0.88195 0.89558 0.84816 0.84639 0.84799 0.85246 0.89871 0.88331 0.88020 0.89994 0.88966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.24 8.24 36.01 0.30 0.53 16 2 C -0.17 0.02 6.11 -36.00 -0.22 -0.20 16 3 C -0.08 -0.08 4.70 -106.25 -0.50 -0.58 16 4 C -0.08 -0.14 1.88 36.01 0.07 -0.08 16 5 O -0.53 -1.31 12.24 -35.23 -0.43 -1.74 16 6 Si 0.70 0.26 27.18 -169.99 -4.62 -4.37 16 7 C -0.69 -0.64 5.88 -41.21 -0.24 -0.88 16 8 S 2.70 3.42 5.30 -107.50 -0.57 2.85 16 9 O -0.95 -3.47 14.34 -57.17 -0.82 -4.29 16 10 O -0.95 -2.86 15.15 -57.17 -0.87 -3.73 16 11 N -1.10 1.77 5.73 -4.20 -0.02 1.74 16 12 C 0.12 -0.16 4.52 -67.11 -0.30 -0.47 16 13 H 0.10 -0.07 4.90 -51.93 -0.25 -0.33 16 14 C -0.13 0.28 7.33 -25.91 -0.19 0.09 16 15 C -0.07 0.18 3.81 -90.95 -0.35 -0.17 16 16 H 0.11 -0.41 8.07 -51.93 -0.42 -0.83 16 17 C -0.04 0.04 5.29 -104.63 -0.55 -0.52 16 18 C -0.15 -0.05 8.60 -39.52 -0.34 -0.39 16 19 C 0.10 0.15 7.30 -39.42 -0.29 -0.13 16 20 F -0.14 -0.42 17.27 2.25 0.04 -0.38 16 21 C -0.16 -0.04 10.03 -39.51 -0.40 -0.43 16 22 C -0.09 0.09 10.04 -39.60 -0.40 -0.31 16 23 C -0.13 0.16 9.71 -39.58 -0.38 -0.23 16 24 C -0.15 0.29 7.25 -25.91 -0.19 0.10 16 25 C -0.05 0.00 6.49 -36.00 -0.23 -0.24 16 26 C -0.11 0.14 8.87 36.01 0.32 0.46 16 27 S 0.16 -0.12 23.31 -107.50 -2.51 -2.62 16 28 H 0.09 -0.38 6.72 -51.93 -0.35 -0.73 16 29 H 0.09 -0.31 8.14 -51.93 -0.42 -0.73 16 30 H 0.10 -0.23 5.85 -51.93 -0.30 -0.53 16 31 H 0.10 0.20 2.77 -51.93 -0.14 0.06 16 32 H 0.37 0.41 9.11 45.56 0.42 0.83 16 33 H -0.24 -0.75 7.11 56.52 0.40 -0.35 16 34 H -0.24 -0.03 6.70 56.52 0.38 0.35 16 35 H 0.42 -1.63 8.80 -34.47 -0.30 -1.93 16 36 H 0.10 -0.21 7.73 -51.93 -0.40 -0.62 16 37 H 0.09 -0.23 8.14 -51.93 -0.42 -0.65 16 38 H 0.13 -0.08 6.64 -52.48 -0.35 -0.43 16 39 H 0.14 -0.14 8.06 -52.49 -0.42 -0.56 16 40 H 0.13 -0.41 8.06 -52.49 -0.42 -0.83 16 41 H 0.13 -0.41 8.05 -52.49 -0.42 -0.83 16 42 H 0.08 -0.19 8.14 -51.93 -0.42 -0.61 16 43 H 0.10 -0.16 5.89 -51.93 -0.31 -0.46 16 44 H 0.10 -0.10 8.14 -51.93 -0.42 -0.52 16 45 H 0.08 -0.25 8.14 -51.93 -0.42 -0.68 16 46 H 0.09 -0.16 6.63 -51.93 -0.34 -0.50 16 LS Contribution 388.37 15.07 5.85 5.85 Total: 0.00 -7.79 388.37 -13.21 -20.99 By element: Atomic # 1 Polarization: -5.52 SS G_CDS: -5.36 Total: -10.88 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -3.90 Total: -3.42 kcal Atomic # 7 Polarization: 1.77 SS G_CDS: -0.02 Total: 1.74 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: -2.12 Total: -9.76 kcal Atomic # 9 Polarization: -0.42 SS G_CDS: 0.04 Total: -0.38 kcal Atomic # 14 Polarization: 0.26 SS G_CDS: -4.62 Total: -4.37 kcal Atomic # 16 Polarization: 3.30 SS G_CDS: -3.08 Total: 0.22 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -7.79 -13.21 -20.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9705266_15065288.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.026 kcal (2) G-P(sol) polarization free energy of solvation -7.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds