Wall clock time and date at job start Mon Mar 8 2021 12:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86305 * 109.47420 * 2 1 4 4 C 1.50703 * 109.47558 * 120.00192 * 2 1 3 5 5 C 1.33385 * 122.54180 * 74.99641 * 4 2 1 6 6 S 1.76205 * 125.20085 * 359.95992 * 5 4 2 7 7 O 1.42096 * 106.40448 * 336.46099 * 6 5 4 8 8 O 1.42092 * 106.40065 * 203.53945 * 6 5 4 9 9 N 1.65603 * 107.21732 * 89.99939 * 6 5 4 10 10 C 1.46502 * 120.00026 * 64.99784 * 9 6 5 11 11 H 1.09005 * 112.84567 * 346.19981 * 10 9 6 12 12 C 1.53777 * 113.68829 * 117.46503 * 10 9 6 13 13 C 1.53775 * 87.08419 * 89.12782 * 12 10 9 14 14 H 1.09001 * 113.69221 * 270.87359 * 13 12 10 15 15 C 1.50701 * 113.61695 * 139.97823 * 13 12 10 16 16 C 1.38218 * 120.00025 * 322.37013 * 15 13 12 17 17 C 1.38256 * 120.00084 * 179.97438 * 16 15 13 18 18 C 1.38215 * 119.99734 * 0.09586 * 17 16 15 19 19 C 1.38252 * 120.00294 * 359.97438 * 18 17 16 20 20 C 1.50696 * 120.00266 * 179.97438 * 19 18 17 21 21 F 1.39904 * 109.47101 * 359.97438 * 20 19 18 22 22 F 1.39900 * 109.47533 * 119.99747 * 20 19 18 23 23 F 1.39906 * 109.47198 * 240.00272 * 20 19 18 24 24 C 1.38221 * 120.00067 * 359.97438 * 19 18 17 25 25 C 1.53777 * 113.61519 * 215.00115 * 10 9 6 26 26 S 1.75884 * 109.59640 * 180.22523 * 5 4 2 27 27 C 1.75888 * 90.96556 * 359.68690 * 26 5 4 28 28 C 1.33384 * 109.59666 * 0.31048 * 27 26 5 29 29 H 0.96698 * 114.00127 * 59.99977 * 1 2 3 30 30 H 1.08998 * 109.47518 * 240.00132 * 2 1 3 31 31 H 1.48501 * 109.99444 * 298.68438 * 3 2 1 32 32 H 1.48494 * 109.99692 * 59.99796 * 3 2 1 33 33 H 0.96999 * 120.00242 * 245.00251 * 9 6 5 34 34 H 1.09002 * 113.61637 * 334.57288 * 12 10 9 35 35 H 1.09004 * 113.61437 * 203.67679 * 12 10 9 36 36 H 1.08001 * 119.99699 * 0.06460 * 16 15 13 37 37 H 1.07995 * 120.00047 * 180.36519 * 17 16 15 38 38 H 1.08000 * 119.99286 * 179.97438 * 18 17 16 39 39 H 1.07999 * 120.00168 * 179.97438 * 24 19 18 40 40 H 1.08998 * 113.61478 * 156.25370 * 25 10 9 41 41 H 1.08993 * 113.69451 * 25.35682 * 25 10 9 42 42 H 1.08002 * 125.19733 * 180.02562 * 27 26 5 43 43 H 1.08006 * 122.53867 * 179.73026 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.8962 -2.0378 1.3572 6 16 1.2747 -3.1576 0.1470 7 8 0.3671 -2.4166 -0.6569 8 8 0.9082 -4.3398 0.8449 9 7 2.5419 -3.5691 -0.8366 10 6 3.6764 -4.3204 -0.2940 11 1 3.6882 -4.3407 0.7958 12 6 3.8660 -5.7039 -0.9380 13 6 4.7569 -5.0092 -1.9813 14 1 4.2092 -4.6391 -2.8480 15 6 5.9793 -5.8060 -2.3579 16 6 6.6529 -6.5345 -1.3957 17 6 7.7741 -7.2660 -1.7413 18 6 8.2224 -7.2671 -3.0487 19 6 7.5495 -6.5373 -4.0109 20 6 8.0387 -6.5380 -5.4363 21 9 9.1790 -7.3422 -5.5376 22 9 7.0368 -7.0413 -6.2730 23 9 8.3549 -5.2307 -5.8215 24 6 6.4280 -5.8068 -3.6656 25 6 5.0274 -3.9320 -0.9175 26 16 2.5579 -2.4989 2.9202 27 6 2.8627 -0.8137 3.3216 28 6 2.4648 -0.0349 2.3145 29 1 -0.3933 0.4417 -0.7650 30 1 1.7923 -0.5138 -0.8900 31 1 1.5878 2.4585 -1.2242 32 1 1.5615 2.4678 1.2084 33 1 2.5329 -3.3126 -1.7721 34 1 2.9492 -6.1209 -1.3548 35 1 4.4039 -6.4100 -0.3053 36 1 6.3026 -6.5335 -0.3741 37 1 8.2970 -7.8399 -0.9906 38 1 9.0985 -7.8381 -3.3185 39 1 5.9026 -5.2364 -4.4172 40 1 5.8827 -4.1537 -0.2793 41 1 5.0496 -2.9187 -1.3182 42 1 3.3004 -0.4630 4.2446 43 1 2.5518 1.0412 2.3430 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_9705322_13652106.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:35:34 Heat of formation + Delta-G solvation = -152.661512 kcal Electronic energy + Delta-G solvation = -35671.128823 eV Core-core repulsion = 30295.134685 eV Total energy + Delta-G solvation = -5375.994138 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 420.051 amu Computer time = 2.69 seconds Orbital eigenvalues (eV) -51.10191 -48.62531 -48.55933 -41.52435 -39.99493 -39.58247 -38.09596 -37.15092 -36.79334 -34.63032 -32.90420 -31.92339 -31.51796 -28.05021 -27.18021 -26.82119 -26.33616 -24.20980 -23.57279 -22.79656 -21.61226 -20.82669 -20.02279 -19.42941 -19.42475 -19.30752 -19.01309 -18.64538 -18.34446 -17.47704 -17.37719 -17.09244 -16.59014 -16.24050 -16.14370 -15.82201 -15.67431 -15.48789 -15.40833 -15.06502 -15.00046 -14.93021 -14.71888 -14.69353 -14.62429 -14.54039 -14.26682 -14.22032 -13.93400 -13.77115 -13.65065 -13.56970 -13.43764 -13.03392 -12.95142 -12.74430 -12.66883 -12.50938 -12.49484 -12.39330 -12.06446 -11.99590 -11.62431 -11.46359 -10.73592 -10.50891 -10.42078 -10.32286 -9.93583 -9.67520 -5.08848 -0.84151 -0.55419 -0.19208 0.09507 0.27095 0.61019 1.13103 1.17022 1.50376 1.67502 1.85404 1.92606 2.30530 2.66490 2.72355 3.01137 3.19279 3.21336 3.40432 3.42679 3.46344 3.53713 3.65481 3.73582 3.78096 3.84353 3.86579 3.89694 3.91630 4.07976 4.11280 4.20675 4.24965 4.43279 4.50319 4.53554 4.63082 4.70970 4.73048 4.79191 4.85551 4.88388 5.01021 5.04065 5.14972 5.17518 5.35474 5.61753 5.76996 6.49970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.509 6.509 2 C -0.076 4.076 3 Si 0.686 3.314 4 C 0.057 3.943 5 C -0.778 4.778 6 S 2.714 3.286 7 O -0.928 6.928 8 O -0.948 6.948 9 N -1.097 6.097 10 C 0.125 3.875 11 H 0.102 0.898 12 C -0.144 4.144 13 C -0.076 4.076 14 H 0.103 0.897 15 C -0.071 4.071 16 C -0.085 4.085 17 C -0.116 4.116 18 C -0.077 4.077 19 C -0.179 4.179 20 C 0.507 3.493 21 F -0.177 7.177 22 F -0.176 7.176 23 F -0.176 7.176 24 C -0.066 4.066 25 C -0.135 4.135 26 S 0.224 5.776 27 C -0.163 4.163 28 C -0.163 4.163 29 H 0.384 0.616 30 H 0.080 0.920 31 H -0.255 1.255 32 H -0.251 1.251 33 H 0.420 0.580 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.133 0.867 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.179 0.821 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.721 1.889 2.771 6.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.317 6.317 2 C -0.188 4.188 3 Si 0.586 3.414 4 C 0.039 3.961 5 C -0.979 4.979 6 S 2.799 3.201 7 O -0.918 6.918 8 O -0.938 6.938 9 N -0.856 5.856 10 C 0.017 3.983 11 H 0.120 0.880 12 C -0.183 4.183 13 C -0.094 4.094 14 H 0.121 0.879 15 C -0.071 4.071 16 C -0.103 4.103 17 C -0.134 4.134 18 C -0.095 4.095 19 C -0.181 4.181 20 C 0.453 3.547 21 F -0.158 7.158 22 F -0.157 7.157 23 F -0.158 7.158 24 C -0.084 4.084 25 C -0.174 4.174 26 S 0.490 5.510 27 C -0.300 4.300 28 C -0.193 4.193 29 H 0.232 0.768 30 H 0.098 0.902 31 H -0.179 1.179 32 H -0.176 1.176 33 H 0.256 0.744 34 H 0.102 0.898 35 H 0.118 0.882 36 H 0.152 0.848 37 H 0.154 0.846 38 H 0.156 0.844 39 H 0.151 0.849 40 H 0.118 0.882 41 H 0.102 0.898 42 H 0.197 0.803 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 4.995 0.677 4.228 6.579 hybrid contribution -0.644 1.743 -1.536 2.411 sum 4.351 2.420 2.692 5.659 Atomic orbital electron populations 1.86612 1.15507 1.80198 1.49366 1.24698 0.86544 1.11103 0.96460 0.95334 0.91126 0.74096 0.80853 1.18034 0.92471 0.90638 0.94920 1.35738 1.27801 1.14207 1.20150 1.01565 0.72307 0.73187 0.73059 1.93663 1.58456 1.72450 1.67212 1.93629 1.80207 1.45410 1.74513 1.55470 1.37318 1.69547 1.23268 1.21635 0.86126 0.92545 0.97984 0.87990 1.23596 1.00620 0.96443 0.97636 1.21610 0.93550 0.96143 0.98090 0.87855 1.19659 0.96839 0.98009 0.92573 1.21299 0.94369 0.94830 0.99823 1.21196 0.96800 0.99463 0.95892 1.21069 0.99092 0.96625 0.92695 1.19974 1.00655 1.05550 0.91874 1.18323 0.75285 0.73806 0.87265 1.93179 1.52078 1.73867 1.96691 1.93234 1.60873 1.87389 1.74244 1.93232 1.92979 1.37033 1.92522 1.20797 0.94137 0.96654 0.96808 1.23479 0.96883 0.99603 0.97470 1.84280 1.55020 1.05272 1.06385 1.26192 1.03285 0.97148 1.03414 1.20290 1.03584 1.02035 0.93407 0.76752 0.90223 1.17946 1.17567 0.74422 0.89780 0.88199 0.84769 0.84573 0.84394 0.84915 0.88202 0.89762 0.80330 0.82795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.51 -1.17 11.10 -56.67 -0.63 -1.80 16 2 C -0.08 0.00 1.78 36.01 0.06 0.06 16 3 Si 0.69 -1.12 30.42 -169.99 -5.17 -6.29 16 4 C 0.06 0.03 5.17 -106.25 -0.55 -0.52 16 5 C -0.78 -0.73 6.54 29.04 0.19 -0.54 16 6 S 2.71 4.26 5.61 -107.50 -0.60 3.66 16 7 O -0.93 -3.49 14.29 -66.03 -0.94 -4.43 16 8 O -0.95 -4.38 17.66 -57.18 -1.01 -5.39 16 9 N -1.10 2.58 5.73 -4.20 -0.02 2.56 16 10 C 0.13 -0.40 4.43 -67.12 -0.30 -0.70 16 11 H 0.10 -0.37 8.05 -51.93 -0.42 -0.78 16 12 C -0.14 0.45 7.25 -25.92 -0.19 0.26 16 13 C -0.08 0.27 3.81 -90.96 -0.35 -0.07 16 14 H 0.10 -0.44 8.07 -51.93 -0.42 -0.86 16 15 C -0.07 0.16 5.29 -104.62 -0.55 -0.40 16 16 C -0.09 0.24 8.61 -39.58 -0.34 -0.10 16 17 C -0.12 0.27 10.05 -39.58 -0.40 -0.13 16 18 C -0.08 0.07 9.43 -39.58 -0.37 -0.30 16 19 C -0.18 -0.01 5.37 -104.63 -0.56 -0.57 16 20 C 0.51 0.63 3.32 36.00 0.12 0.75 16 21 F -0.18 -0.30 15.97 2.25 0.04 -0.27 16 22 F -0.18 -0.38 17.24 2.25 0.04 -0.34 16 23 F -0.18 -0.34 17.24 2.25 0.04 -0.30 16 24 C -0.07 0.07 9.26 -39.58 -0.37 -0.30 16 25 C -0.14 0.61 7.33 -25.92 -0.19 0.42 16 26 S 0.22 -0.12 23.21 -107.50 -2.50 -2.61 16 27 C -0.16 0.29 11.23 29.04 0.33 0.62 16 28 C -0.16 0.13 8.74 -41.21 -0.36 -0.23 16 29 H 0.38 -0.49 8.74 45.56 0.40 -0.09 16 30 H 0.08 -0.14 7.16 -51.93 -0.37 -0.51 16 31 H -0.25 -0.12 7.11 56.52 0.40 0.29 16 32 H -0.25 -0.24 6.86 56.52 0.39 0.15 16 33 H 0.42 -1.85 8.80 -34.47 -0.30 -2.15 16 34 H 0.08 -0.18 8.14 -51.93 -0.42 -0.60 16 35 H 0.10 -0.41 6.32 -51.93 -0.33 -0.74 16 36 H 0.13 -0.65 6.66 -52.49 -0.35 -1.00 16 37 H 0.14 -0.58 8.06 -52.49 -0.42 -1.00 16 38 H 0.14 -0.26 7.16 -52.49 -0.38 -0.63 16 39 H 0.13 -0.27 8.05 -52.49 -0.42 -0.69 16 40 H 0.10 -0.52 7.72 -51.93 -0.40 -0.92 16 41 H 0.08 -0.42 8.14 -51.93 -0.42 -0.84 16 42 H 0.18 -0.83 8.06 -52.49 -0.42 -1.25 16 43 H 0.15 -0.35 5.57 -52.48 -0.29 -0.64 16 LS Contribution 394.74 15.07 5.95 5.95 Total: 0.00 -10.49 394.74 -12.82 -23.31 By element: Atomic # 1 Polarization: -8.12 SS G_CDS: -4.19 Total: -12.30 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -3.82 Total: -1.74 kcal Atomic # 7 Polarization: 2.58 SS G_CDS: -0.02 Total: 2.56 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: -2.58 Total: -11.63 kcal Atomic # 9 Polarization: -1.02 SS G_CDS: 0.11 Total: -0.91 kcal Atomic # 14 Polarization: -1.12 SS G_CDS: -5.17 Total: -6.29 kcal Atomic # 16 Polarization: 4.15 SS G_CDS: -3.10 Total: 1.05 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -10.49 -12.82 -23.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9705322_13652106.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.352 kcal (2) G-P(sol) polarization free energy of solvation -10.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.69 seconds