Wall clock time and date at job start Mon Mar 8 2021 12:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86305 * 109.47420 * 2 1 4 4 C 1.50703 * 109.47558 * 120.00192 * 2 1 3 5 5 C 1.33385 * 122.54180 * 74.99641 * 4 2 1 6 6 S 1.76205 * 125.20085 * 359.95992 * 5 4 2 7 7 O 1.42096 * 106.40448 * 336.46099 * 6 5 4 8 8 O 1.42092 * 106.40065 * 203.53945 * 6 5 4 9 9 N 1.65603 * 107.21732 * 89.99939 * 6 5 4 10 10 C 1.46502 * 120.00026 * 64.99784 * 9 6 5 11 11 H 1.09005 * 112.84567 * 346.19981 * 10 9 6 12 12 C 1.53777 * 113.68829 * 117.46503 * 10 9 6 13 13 C 1.53775 * 87.08419 * 89.12782 * 12 10 9 14 14 H 1.09001 * 113.69221 * 270.87359 * 13 12 10 15 15 C 1.50701 * 113.61695 * 139.97823 * 13 12 10 16 16 C 1.38218 * 120.00025 * 322.37013 * 15 13 12 17 17 C 1.38256 * 120.00084 * 179.97438 * 16 15 13 18 18 C 1.38215 * 119.99734 * 0.09586 * 17 16 15 19 19 C 1.38252 * 120.00294 * 359.97438 * 18 17 16 20 20 C 1.50696 * 120.00266 * 179.97438 * 19 18 17 21 21 F 1.39904 * 109.47101 * 359.97438 * 20 19 18 22 22 F 1.39900 * 109.47533 * 119.99747 * 20 19 18 23 23 F 1.39906 * 109.47198 * 240.00272 * 20 19 18 24 24 C 1.38221 * 120.00067 * 359.97438 * 19 18 17 25 25 C 1.53777 * 113.61519 * 215.00115 * 10 9 6 26 26 S 1.75884 * 109.59640 * 180.22523 * 5 4 2 27 27 C 1.75888 * 90.96556 * 359.68690 * 26 5 4 28 28 C 1.33384 * 109.59666 * 0.31048 * 27 26 5 29 29 H 0.96698 * 114.00127 * 59.99977 * 1 2 3 30 30 H 1.08998 * 109.47518 * 240.00132 * 2 1 3 31 31 H 1.48501 * 109.99444 * 298.68438 * 3 2 1 32 32 H 1.48494 * 109.99692 * 59.99796 * 3 2 1 33 33 H 0.96999 * 120.00242 * 245.00251 * 9 6 5 34 34 H 1.09002 * 113.61637 * 334.57288 * 12 10 9 35 35 H 1.09004 * 113.61437 * 203.67679 * 12 10 9 36 36 H 1.08001 * 119.99699 * 0.06460 * 16 15 13 37 37 H 1.07995 * 120.00047 * 180.36519 * 17 16 15 38 38 H 1.08000 * 119.99286 * 179.97438 * 18 17 16 39 39 H 1.07999 * 120.00168 * 179.97438 * 24 19 18 40 40 H 1.08998 * 113.61478 * 156.25370 * 25 10 9 41 41 H 1.08993 * 113.69451 * 25.35682 * 25 10 9 42 42 H 1.08002 * 125.19733 * 180.02562 * 27 26 5 43 43 H 1.08006 * 122.53867 * 179.73026 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.8962 -2.0378 1.3572 6 16 1.2747 -3.1576 0.1470 7 8 0.3671 -2.4166 -0.6569 8 8 0.9082 -4.3398 0.8449 9 7 2.5419 -3.5691 -0.8366 10 6 3.6764 -4.3204 -0.2940 11 1 3.6882 -4.3407 0.7958 12 6 3.8660 -5.7039 -0.9380 13 6 4.7569 -5.0092 -1.9813 14 1 4.2092 -4.6391 -2.8480 15 6 5.9793 -5.8060 -2.3579 16 6 6.6529 -6.5345 -1.3957 17 6 7.7741 -7.2660 -1.7413 18 6 8.2224 -7.2671 -3.0487 19 6 7.5495 -6.5373 -4.0109 20 6 8.0387 -6.5380 -5.4363 21 9 9.1790 -7.3422 -5.5376 22 9 7.0368 -7.0413 -6.2730 23 9 8.3549 -5.2307 -5.8215 24 6 6.4280 -5.8068 -3.6656 25 6 5.0274 -3.9320 -0.9175 26 16 2.5579 -2.4989 2.9202 27 6 2.8627 -0.8137 3.3216 28 6 2.4648 -0.0349 2.3145 29 1 -0.3933 0.4417 -0.7650 30 1 1.7923 -0.5138 -0.8900 31 1 1.5878 2.4585 -1.2242 32 1 1.5615 2.4678 1.2084 33 1 2.5329 -3.3126 -1.7721 34 1 2.9492 -6.1209 -1.3548 35 1 4.4039 -6.4100 -0.3053 36 1 6.3026 -6.5335 -0.3741 37 1 8.2970 -7.8399 -0.9906 38 1 9.0985 -7.8381 -3.3185 39 1 5.9026 -5.2364 -4.4172 40 1 5.8827 -4.1537 -0.2793 41 1 5.0496 -2.9187 -1.3182 42 1 3.3004 -0.4630 4.2446 43 1 2.5518 1.0412 2.3430 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_9705322_13652106.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:35:33 Heat of formation + Delta-G solvation = -152.058432 kcal Electronic energy + Delta-G solvation = -35671.102671 eV Core-core repulsion = 30295.134685 eV Total energy + Delta-G solvation = -5375.967986 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 420.051 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -51.21761 -48.74691 -48.68997 -41.28869 -39.94318 -39.38144 -38.26357 -37.19745 -36.96967 -34.47958 -32.74894 -31.74837 -31.44022 -28.02518 -27.11248 -26.54076 -26.12101 -24.11568 -23.41838 -22.65719 -21.60523 -20.68505 -19.95524 -19.54507 -19.42671 -19.34175 -18.93931 -18.67235 -18.38991 -17.35120 -17.25610 -16.95547 -16.48410 -16.18457 -15.97805 -15.83303 -15.65224 -15.61602 -15.43671 -15.13589 -14.98646 -14.85790 -14.82203 -14.67255 -14.55806 -14.34994 -14.23011 -14.16017 -13.78357 -13.64758 -13.61075 -13.45853 -13.25254 -13.23090 -13.15929 -12.64647 -12.61384 -12.53384 -12.41410 -12.33992 -11.82988 -11.72832 -11.58042 -11.20384 -10.55482 -10.45941 -10.35415 -10.15278 -9.74735 -9.60696 -4.96658 -0.82859 -0.56204 -0.04378 0.27576 0.32621 0.71982 1.22448 1.25635 1.60484 1.63315 1.93352 1.96858 2.47754 2.61301 2.70117 2.97697 3.25768 3.37083 3.44275 3.52419 3.67768 3.72367 3.85856 3.88308 3.98286 4.00004 4.07180 4.12086 4.16621 4.22229 4.30463 4.37539 4.43657 4.66577 4.74082 4.76891 4.87626 4.94819 4.96360 4.97979 5.10374 5.11595 5.16801 5.21487 5.37028 5.42823 5.60374 5.83302 6.02796 6.59896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.538 6.538 2 C -0.101 4.101 3 Si 0.781 3.219 4 C 0.051 3.949 5 C -0.796 4.796 6 S 2.724 3.276 7 O -0.958 6.958 8 O -0.986 6.986 9 N -1.084 6.084 10 C 0.116 3.884 11 H 0.107 0.893 12 C -0.148 4.148 13 C -0.075 4.075 14 H 0.107 0.893 15 C -0.071 4.071 16 C -0.084 4.084 17 C -0.117 4.117 18 C -0.090 4.090 19 C -0.195 4.195 20 C 0.505 3.495 21 F -0.182 7.182 22 F -0.184 7.184 23 F -0.183 7.183 24 C -0.079 4.079 25 C -0.124 4.124 26 S 0.220 5.780 27 C -0.146 4.146 28 C -0.179 4.179 29 H 0.394 0.606 30 H 0.093 0.907 31 H -0.284 1.284 32 H -0.285 1.285 33 H 0.430 0.570 34 H 0.070 0.930 35 H 0.112 0.888 36 H 0.158 0.842 37 H 0.157 0.843 38 H 0.141 0.859 39 H 0.136 0.864 40 H 0.113 0.887 41 H 0.093 0.907 42 H 0.210 0.790 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.972 2.504 4.164 8.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.211 4.211 3 Si 0.684 3.316 4 C 0.032 3.968 5 C -0.998 4.998 6 S 2.811 3.189 7 O -0.948 6.948 8 O -0.976 6.976 9 N -0.846 5.846 10 C 0.009 3.991 11 H 0.124 0.876 12 C -0.187 4.187 13 C -0.093 4.093 14 H 0.125 0.875 15 C -0.071 4.071 16 C -0.102 4.102 17 C -0.135 4.135 18 C -0.108 4.108 19 C -0.196 4.196 20 C 0.451 3.549 21 F -0.163 7.163 22 F -0.166 7.166 23 F -0.164 7.164 24 C -0.097 4.097 25 C -0.163 4.163 26 S 0.486 5.514 27 C -0.284 4.284 28 C -0.208 4.208 29 H 0.244 0.756 30 H 0.111 0.889 31 H -0.211 1.211 32 H -0.212 1.212 33 H 0.268 0.732 34 H 0.089 0.911 35 H 0.131 0.869 36 H 0.176 0.824 37 H 0.175 0.825 38 H 0.159 0.841 39 H 0.154 0.846 40 H 0.131 0.869 41 H 0.111 0.889 42 H 0.227 0.773 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 6.241 1.257 5.587 8.470 hybrid contribution -1.027 1.545 -1.944 2.688 sum 5.214 2.802 3.643 6.950 Atomic orbital electron populations 1.86564 1.17005 1.80897 1.50287 1.25163 0.85657 1.13164 0.97092 0.94304 0.89410 0.70745 0.77166 1.18280 0.92280 0.90683 0.95514 1.35539 1.29223 1.14261 1.20812 1.00849 0.72643 0.72519 0.72879 1.93617 1.60363 1.72860 1.67928 1.93579 1.81458 1.47092 1.75431 1.55127 1.36792 1.69432 1.23294 1.21825 0.86323 0.92552 0.98416 0.87552 1.23675 1.00349 0.96690 0.98004 1.21642 0.92954 0.96294 0.98413 0.87494 1.19821 0.97114 0.98004 0.92139 1.21618 0.93843 0.93886 1.00828 1.21484 0.96945 0.99376 0.95646 1.21238 0.99413 0.96838 0.93292 1.19987 1.01612 1.06926 0.91078 1.18554 0.74975 0.73365 0.87994 1.93159 1.52387 1.73999 1.96773 1.93209 1.61193 1.87488 1.74700 1.93210 1.93030 1.37479 1.92699 1.20949 0.94114 0.96921 0.97680 1.23471 0.96216 0.99746 0.96856 1.84283 1.54878 1.06475 1.05725 1.26584 1.01717 0.96026 1.04035 1.20473 1.04137 1.02855 0.93335 0.75580 0.88867 1.21125 1.21191 0.73221 0.91099 0.86936 0.82402 0.82530 0.84133 0.84604 0.86861 0.88875 0.77279 0.81424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -3.03 11.10 -128.48 -1.43 -4.46 16 2 C -0.10 -0.03 1.78 71.24 0.13 0.09 16 3 Si 0.78 -2.84 30.42 68.60 2.09 -0.76 16 4 C 0.05 0.05 5.17 -20.92 -0.11 -0.06 16 5 C -0.80 -1.69 6.54 66.72 0.44 -1.25 16 6 S 2.72 11.40 5.61 -56.49 -0.32 11.08 16 7 O -0.96 -8.65 14.29 -119.53 -1.71 -10.35 16 8 O -0.99 -10.59 17.66 -128.00 -2.26 -12.85 16 9 N -1.08 4.87 5.73 -167.20 -0.96 3.91 16 10 C 0.12 -0.82 4.43 45.51 0.20 -0.62 16 11 H 0.11 -0.82 8.05 -2.38 -0.02 -0.84 16 12 C -0.15 1.01 7.25 31.12 0.23 1.24 16 13 C -0.07 0.60 3.81 -11.01 -0.04 0.56 16 14 H 0.11 -0.95 8.07 -2.39 -0.02 -0.97 16 15 C -0.07 0.37 5.29 -19.86 -0.11 0.27 16 16 C -0.08 0.60 8.61 22.27 0.19 0.79 16 17 C -0.12 0.67 10.05 22.27 0.22 0.89 16 18 C -0.09 0.17 9.43 22.27 0.21 0.38 16 19 C -0.19 -0.14 5.37 -19.87 -0.11 -0.24 16 20 C 0.51 1.85 3.32 71.23 0.24 2.09 16 21 F -0.18 -0.84 15.97 44.97 0.72 -0.12 16 22 F -0.18 -1.04 17.24 44.97 0.78 -0.26 16 23 F -0.18 -0.92 17.24 44.97 0.78 -0.14 16 24 C -0.08 0.14 9.26 22.27 0.21 0.34 16 25 C -0.12 1.31 7.33 31.12 0.23 1.54 16 26 S 0.22 -0.33 23.21 -56.49 -1.31 -1.65 16 27 C -0.15 0.76 11.23 66.72 0.75 1.51 16 28 C -0.18 0.47 8.74 21.22 0.19 0.65 16 29 H 0.39 -0.49 8.74 -74.06 -0.65 -1.13 16 30 H 0.09 -0.31 7.16 -2.39 -0.02 -0.32 16 31 H -0.28 -0.28 7.11 99.48 0.71 0.42 16 32 H -0.29 -0.52 6.86 99.48 0.68 0.16 16 33 H 0.43 -3.70 8.80 -96.74 -0.85 -4.55 16 34 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 35 H 0.11 -1.08 6.32 -2.38 -0.02 -1.10 16 36 H 0.16 -1.94 6.66 -2.91 -0.02 -1.95 16 37 H 0.16 -1.61 8.06 -2.91 -0.02 -1.64 16 38 H 0.14 -0.46 7.16 -2.91 -0.02 -0.48 16 39 H 0.14 -0.46 8.05 -2.91 -0.02 -0.48 16 40 H 0.11 -1.45 7.72 -2.39 -0.02 -1.47 16 41 H 0.09 -1.10 8.14 -2.39 -0.02 -1.12 16 42 H 0.21 -2.53 8.06 -2.91 -0.02 -2.55 16 43 H 0.17 -0.99 5.57 -2.91 -0.02 -1.00 16 Total: 0.00 -25.60 394.74 -1.13 -26.73 By element: Atomic # 1 Polarization: -18.96 SS G_CDS: -0.36 Total: -19.32 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: 2.86 Total: 8.18 kcal Atomic # 7 Polarization: 4.87 SS G_CDS: -0.96 Total: 3.91 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -5.40 Total: -27.66 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 2.27 Total: -0.52 kcal Atomic # 14 Polarization: -2.84 SS G_CDS: 2.09 Total: -0.76 kcal Atomic # 16 Polarization: 11.06 SS G_CDS: -1.63 Total: 9.44 kcal Total: -25.60 -1.13 -26.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9705322_13652106.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.330 kcal (2) G-P(sol) polarization free energy of solvation -25.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds