Wall clock time and date at job start Mon Mar 8 2021 12:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42910 * 1 3 3 Si 1.86306 * 109.46823 * 2 1 4 4 C 1.50693 * 109.46872 * 119.99922 * 2 1 3 5 5 C 1.33388 * 122.54245 * 75.00419 * 4 2 1 6 6 S 1.76203 * 125.19848 * 359.97438 * 5 4 2 7 7 O 1.42094 * 106.40377 * 293.54310 * 6 5 4 8 8 O 1.42104 * 106.40403 * 66.46519 * 6 5 4 9 9 N 1.65599 * 107.21593 * 180.02562 * 6 5 4 10 10 C 1.46505 * 120.00000 * 65.00092 * 9 6 5 11 11 H 1.08997 * 112.84775 * 13.80717 * 10 9 6 12 12 C 1.53786 * 113.61223 * 144.99822 * 10 9 6 13 13 C 1.53781 * 87.07918 * 89.11893 * 12 10 9 14 14 H 1.09002 * 113.61232 * 270.79547 * 13 12 10 15 15 C 1.50699 * 113.61192 * 139.97809 * 13 12 10 16 16 C 1.38203 * 119.97772 * 299.72473 * 15 13 12 17 17 C 1.38480 * 120.02574 * 179.73073 * 16 15 13 18 18 F 1.35100 * 120.01443 * 180.25627 * 17 16 15 19 19 C 1.38416 * 119.97393 * 0.54061 * 17 16 15 20 20 C 1.38424 * 119.94873 * 359.73372 * 19 17 16 21 21 F 1.35098 * 120.01319 * 180.02562 * 20 19 17 22 22 C 1.38211 * 119.97479 * 120.00025 * 15 13 12 23 23 C 1.53779 * 87.08275 * 25.43160 * 13 12 10 24 24 S 1.75879 * 109.59837 * 179.97438 * 5 4 2 25 25 C 1.75889 * 90.97049 * 359.97438 * 24 5 4 26 26 C 1.33389 * 109.59326 * 0.02562 * 25 24 5 27 27 H 0.96702 * 113.99871 * 300.00420 * 1 2 3 28 28 H 1.08996 * 109.46644 * 240.00285 * 2 1 3 29 29 H 1.48498 * 109.99580 * 178.68072 * 3 2 1 30 30 H 1.48493 * 110.00014 * 300.00059 * 3 2 1 31 31 H 0.97006 * 120.00593 * 245.00033 * 9 6 5 32 32 H 1.09000 * 113.61018 * 203.66671 * 12 10 9 33 33 H 1.08999 * 113.61542 * 334.56721 * 12 10 9 34 34 H 1.08004 * 119.98872 * 359.97438 * 16 15 13 35 35 H 1.07999 * 120.02610 * 179.74852 * 19 17 16 36 36 H 1.08007 * 119.98384 * 359.97438 * 22 15 13 37 37 H 1.09001 * 113.61361 * 220.02016 * 23 13 12 38 38 H 1.08997 * 113.61581 * 89.11660 * 23 13 12 39 39 H 1.07995 * 125.20405 * 179.73500 * 25 24 5 40 40 H 1.07998 * 122.54399 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.8962 -2.0377 1.3572 6 16 1.2753 -3.1575 0.1467 7 8 -0.1217 -2.9147 0.0544 8 8 2.1542 -3.0726 -0.9667 9 7 1.4441 -4.6862 0.7608 10 6 0.6863 -5.0860 1.9492 11 1 -0.1179 -4.3914 2.1918 12 6 0.2438 -6.5587 1.9310 13 6 1.5841 -6.8879 2.6094 14 1 2.3929 -7.0846 1.9057 15 6 1.4746 -7.9390 3.6838 16 6 0.6651 -7.7215 4.7827 17 6 0.5594 -8.6890 5.7678 18 9 -0.2360 -8.4784 6.8393 19 6 1.2736 -9.8695 5.6571 20 6 2.0885 -10.0838 4.5589 21 9 2.7858 -11.2357 4.4493 22 6 2.1883 -9.1173 3.5724 23 6 1.5731 -5.4491 3.1520 24 16 2.5643 -2.4993 2.9174 25 6 2.8634 -0.8138 3.3215 26 6 2.4651 -0.0349 2.3145 27 1 -0.3933 0.4418 0.7650 28 1 1.7923 -0.5138 -0.8900 29 1 3.5346 1.7703 0.0321 30 1 1.5615 2.4679 -1.2084 31 1 2.0447 -5.3170 0.3337 32 1 -0.6244 -6.7614 2.5580 33 1 0.1487 -6.9737 0.9276 34 1 0.1116 -6.7983 4.8712 35 1 1.1950 -10.6229 6.4269 36 1 2.8237 -9.2845 2.7152 37 1 2.5512 -4.9683 3.1342 38 1 1.0683 -5.3485 4.1127 39 1 3.2982 -0.4628 4.2456 40 1 2.5524 1.0412 2.3427 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_9705378_13652106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:36:04 Heat of formation + Delta-G solvation = -95.275565 kcal Electronic energy + Delta-G solvation = -31152.204276 eV Core-core repulsion = 26403.690174 eV Total energy + Delta-G solvation = -4748.514102 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.045 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -50.06357 -50.04230 -41.49511 -40.10603 -39.20114 -38.14196 -37.12396 -36.82029 -34.52451 -31.87564 -31.52488 -31.38803 -28.07330 -27.05733 -26.63178 -24.41109 -24.04442 -23.25741 -21.74963 -20.86637 -20.06909 -19.84796 -18.94191 -18.54923 -18.19130 -18.01254 -17.56173 -17.33206 -17.04839 -16.79406 -16.73914 -16.34712 -16.33502 -16.05490 -16.01529 -15.83976 -15.38128 -15.22210 -15.18942 -14.65959 -14.27531 -14.00538 -13.96759 -13.84834 -13.76705 -13.57281 -13.17575 -13.09569 -13.07527 -12.99294 -12.80253 -12.67499 -12.63989 -12.25037 -12.20361 -12.01261 -11.73800 -11.54990 -10.80691 -10.59265 -10.49335 -10.01774 -9.88578 -9.75572 -5.15447 -0.75074 -0.73168 -0.19868 -0.16750 0.15108 0.52416 1.10764 1.17381 1.57997 1.80164 1.90710 2.15115 2.57871 2.70494 3.06366 3.21191 3.28191 3.30873 3.35562 3.38473 3.52654 3.57600 3.64929 3.76888 3.83775 3.86351 3.93325 3.95439 4.03452 4.23678 4.36337 4.44491 4.51866 4.55855 4.57413 4.65204 4.69894 4.75551 4.76009 4.85470 4.86617 4.94891 5.06113 5.22228 5.62188 5.69599 6.47525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.518 6.518 2 C -0.099 4.099 3 Si 0.707 3.293 4 C 0.006 3.994 5 C -0.769 4.769 6 S 2.716 3.284 7 O -0.922 6.922 8 O -0.950 6.950 9 N -1.101 6.101 10 C 0.117 3.883 11 H 0.115 0.885 12 C -0.130 4.130 13 C -0.075 4.075 14 H 0.109 0.891 15 C -0.013 4.013 16 C -0.164 4.164 17 C 0.136 3.864 18 F -0.129 7.129 19 C -0.197 4.197 20 C 0.136 3.864 21 F -0.129 7.129 22 C -0.161 4.161 23 C -0.152 4.152 24 S 0.210 5.790 25 C -0.167 4.167 26 C -0.158 4.158 27 H 0.382 0.618 28 H 0.122 0.878 29 H -0.251 1.251 30 H -0.245 1.245 31 H 0.422 0.578 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.145 0.855 35 H 0.149 0.851 36 H 0.143 0.857 37 H 0.083 0.917 38 H 0.106 0.894 39 H 0.179 0.821 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.116 2.005 5.312 5.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.323 6.323 2 C -0.211 4.211 3 Si 0.606 3.394 4 C -0.012 4.012 5 C -0.969 4.969 6 S 2.800 3.200 7 O -0.911 6.911 8 O -0.940 6.940 9 N -0.861 5.861 10 C 0.009 3.991 11 H 0.133 0.867 12 C -0.169 4.169 13 C -0.093 4.093 14 H 0.127 0.873 15 C -0.013 4.013 16 C -0.183 4.183 17 C 0.117 3.883 18 F -0.107 7.107 19 C -0.217 4.217 20 C 0.116 3.884 21 F -0.108 7.108 22 C -0.180 4.180 23 C -0.192 4.192 24 S 0.477 5.523 25 C -0.305 4.305 26 C -0.187 4.187 27 H 0.229 0.771 28 H 0.140 0.860 29 H -0.175 1.175 30 H -0.170 1.170 31 H 0.258 0.742 32 H 0.122 0.878 33 H 0.105 0.895 34 H 0.163 0.837 35 H 0.167 0.833 36 H 0.161 0.839 37 H 0.101 0.899 38 H 0.124 0.876 39 H 0.196 0.804 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 1.479 1.240 4.444 4.845 hybrid contribution 0.647 0.276 0.039 0.705 sum 2.126 1.516 4.483 5.188 Atomic orbital electron populations 1.86695 1.14982 1.81700 1.48970 1.25395 0.86883 1.12526 0.96314 0.94817 0.80996 0.75993 0.87588 1.19056 0.94044 0.91389 0.96689 1.35703 1.26146 1.14404 1.20633 1.01612 0.74363 0.71648 0.72338 1.93668 1.29254 1.83763 1.84423 1.93635 1.67574 1.85697 1.47094 1.55454 1.58036 1.31037 1.41534 1.21793 0.94185 0.98683 0.84474 0.86683 1.23415 0.96860 0.94066 1.02537 1.21651 0.99768 0.92237 0.95653 0.87329 1.19296 0.93749 0.93987 0.94261 1.21060 1.02692 1.00327 0.94212 1.17245 0.91731 0.94194 0.85132 1.91566 1.71100 1.94926 1.53133 1.21099 1.00764 0.99264 1.00566 1.17285 0.93003 0.83040 0.95033 1.91565 1.76629 1.46625 1.95936 1.21132 1.03161 0.93628 1.00030 1.23773 1.01579 0.94988 0.98863 1.84223 1.56224 1.05417 1.06481 1.26260 1.03294 0.97428 1.03474 1.20208 1.03673 1.01571 0.93291 0.77070 0.86019 1.17535 1.16972 0.74230 0.87845 0.89488 0.83700 0.83329 0.83891 0.89851 0.87612 0.80403 0.82547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 -0.79 12.30 -36.15 -0.44 -1.24 16 2 C -0.10 -0.12 2.33 36.00 0.08 -0.03 16 3 Si 0.71 -0.78 30.25 -169.99 -5.14 -5.92 16 4 C 0.01 0.00 5.13 -106.25 -0.55 -0.54 16 5 C -0.77 -0.56 6.46 29.04 0.19 -0.37 16 6 S 2.72 5.58 5.04 -107.50 -0.54 5.04 16 7 O -0.92 -4.41 16.95 -59.59 -1.01 -5.42 16 8 O -0.95 -4.86 17.50 -57.17 -1.00 -5.86 16 9 N -1.10 2.10 5.54 -4.20 -0.02 2.08 16 10 C 0.12 -0.37 3.91 -67.11 -0.26 -0.63 16 11 H 0.12 -0.37 7.77 -51.93 -0.40 -0.78 16 12 C -0.13 0.50 7.33 -25.92 -0.19 0.31 16 13 C -0.07 0.31 3.80 -90.96 -0.35 -0.04 16 14 H 0.11 -0.55 8.06 -51.93 -0.42 -0.96 16 15 C -0.01 0.03 5.29 -104.65 -0.55 -0.52 16 16 C -0.16 0.34 8.60 -39.50 -0.34 0.00 16 17 C 0.14 -0.04 7.30 -39.43 -0.29 -0.33 16 18 F -0.13 -0.12 17.27 2.25 0.04 -0.08 16 19 C -0.20 0.04 10.01 -39.45 -0.39 -0.36 16 20 C 0.14 0.00 7.30 -39.43 -0.29 -0.28 16 21 F -0.13 -0.19 17.27 2.25 0.04 -0.15 16 22 C -0.16 0.25 9.69 -39.51 -0.38 -0.13 16 23 C -0.15 0.67 6.19 -25.92 -0.16 0.51 16 24 S 0.21 -0.46 19.55 -107.50 -2.10 -2.56 16 25 C -0.17 0.46 11.23 29.04 0.33 0.78 16 26 C -0.16 0.30 8.74 -41.20 -0.36 -0.06 16 27 H 0.38 -1.21 8.70 45.56 0.40 -0.81 16 28 H 0.12 0.33 7.24 -51.93 -0.38 -0.04 16 29 H -0.25 -0.26 7.11 56.52 0.40 0.15 16 30 H -0.25 -0.47 7.11 56.52 0.40 -0.07 16 31 H 0.42 -1.61 8.79 -34.48 -0.30 -1.91 16 32 H 0.10 -0.45 7.73 -51.93 -0.40 -0.86 16 33 H 0.09 -0.33 8.14 -51.93 -0.42 -0.75 16 34 H 0.15 -0.58 6.64 -52.48 -0.35 -0.92 16 35 H 0.15 -0.16 8.06 -52.49 -0.42 -0.58 16 36 H 0.14 -0.44 8.05 -52.48 -0.42 -0.86 16 37 H 0.08 -0.38 6.24 -51.93 -0.32 -0.70 16 38 H 0.11 -0.57 6.29 -51.93 -0.33 -0.90 16 39 H 0.18 -0.97 8.06 -52.49 -0.42 -1.40 16 40 H 0.16 -0.72 5.73 -52.49 -0.30 -1.02 16 LS Contribution 364.67 15.07 5.50 5.50 Total: 0.00 -10.86 364.67 -11.90 -22.75 By element: Atomic # 1 Polarization: -8.73 SS G_CDS: -3.69 Total: -12.42 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -3.51 Total: -1.70 kcal Atomic # 7 Polarization: 2.10 SS G_CDS: -0.02 Total: 2.08 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: -2.46 Total: -12.52 kcal Atomic # 9 Polarization: -0.31 SS G_CDS: 0.08 Total: -0.23 kcal Atomic # 14 Polarization: -0.78 SS G_CDS: -5.14 Total: -5.92 kcal Atomic # 16 Polarization: 5.12 SS G_CDS: -2.64 Total: 2.47 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -10.86 -11.90 -22.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9705378_13652106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.524 kcal (2) G-P(sol) polarization free energy of solvation -10.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds