Wall clock time and date at job start Mon Mar 8 2021 12:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42910 * 1 3 3 Si 1.86306 * 109.46823 * 2 1 4 4 C 1.50693 * 109.46872 * 119.99922 * 2 1 3 5 5 C 1.33388 * 122.54245 * 75.00419 * 4 2 1 6 6 S 1.76203 * 125.19848 * 359.97438 * 5 4 2 7 7 O 1.42094 * 106.40377 * 293.54310 * 6 5 4 8 8 O 1.42104 * 106.40403 * 66.46519 * 6 5 4 9 9 N 1.65599 * 107.21593 * 180.02562 * 6 5 4 10 10 C 1.46505 * 120.00000 * 65.00092 * 9 6 5 11 11 H 1.08997 * 112.84775 * 13.80717 * 10 9 6 12 12 C 1.53786 * 113.61223 * 144.99822 * 10 9 6 13 13 C 1.53781 * 87.07918 * 89.11893 * 12 10 9 14 14 H 1.09002 * 113.61232 * 270.79547 * 13 12 10 15 15 C 1.50699 * 113.61192 * 139.97809 * 13 12 10 16 16 C 1.38203 * 119.97772 * 299.72473 * 15 13 12 17 17 C 1.38480 * 120.02574 * 179.73073 * 16 15 13 18 18 F 1.35100 * 120.01443 * 180.25627 * 17 16 15 19 19 C 1.38416 * 119.97393 * 0.54061 * 17 16 15 20 20 C 1.38424 * 119.94873 * 359.73372 * 19 17 16 21 21 F 1.35098 * 120.01319 * 180.02562 * 20 19 17 22 22 C 1.38211 * 119.97479 * 120.00025 * 15 13 12 23 23 C 1.53779 * 87.08275 * 25.43160 * 13 12 10 24 24 S 1.75879 * 109.59837 * 179.97438 * 5 4 2 25 25 C 1.75889 * 90.97049 * 359.97438 * 24 5 4 26 26 C 1.33389 * 109.59326 * 0.02562 * 25 24 5 27 27 H 0.96702 * 113.99871 * 300.00420 * 1 2 3 28 28 H 1.08996 * 109.46644 * 240.00285 * 2 1 3 29 29 H 1.48498 * 109.99580 * 178.68072 * 3 2 1 30 30 H 1.48493 * 110.00014 * 300.00059 * 3 2 1 31 31 H 0.97006 * 120.00593 * 245.00033 * 9 6 5 32 32 H 1.09000 * 113.61018 * 203.66671 * 12 10 9 33 33 H 1.08999 * 113.61542 * 334.56721 * 12 10 9 34 34 H 1.08004 * 119.98872 * 359.97438 * 16 15 13 35 35 H 1.07999 * 120.02610 * 179.74852 * 19 17 16 36 36 H 1.08007 * 119.98384 * 359.97438 * 22 15 13 37 37 H 1.09001 * 113.61361 * 220.02016 * 23 13 12 38 38 H 1.08997 * 113.61581 * 89.11660 * 23 13 12 39 39 H 1.07995 * 125.20405 * 179.73500 * 25 24 5 40 40 H 1.07998 * 122.54399 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.8962 -2.0377 1.3572 6 16 1.2753 -3.1575 0.1467 7 8 -0.1217 -2.9147 0.0544 8 8 2.1542 -3.0726 -0.9667 9 7 1.4441 -4.6862 0.7608 10 6 0.6863 -5.0860 1.9492 11 1 -0.1179 -4.3914 2.1918 12 6 0.2438 -6.5587 1.9310 13 6 1.5841 -6.8879 2.6094 14 1 2.3929 -7.0846 1.9057 15 6 1.4746 -7.9390 3.6838 16 6 0.6651 -7.7215 4.7827 17 6 0.5594 -8.6890 5.7678 18 9 -0.2360 -8.4784 6.8393 19 6 1.2736 -9.8695 5.6571 20 6 2.0885 -10.0838 4.5589 21 9 2.7858 -11.2357 4.4493 22 6 2.1883 -9.1173 3.5724 23 6 1.5731 -5.4491 3.1520 24 16 2.5643 -2.4993 2.9174 25 6 2.8634 -0.8138 3.3215 26 6 2.4651 -0.0349 2.3145 27 1 -0.3933 0.4418 0.7650 28 1 1.7923 -0.5138 -0.8900 29 1 3.5346 1.7703 0.0321 30 1 1.5615 2.4679 -1.2084 31 1 2.0447 -5.3170 0.3337 32 1 -0.6244 -6.7614 2.5580 33 1 0.1487 -6.9737 0.9276 34 1 0.1116 -6.7983 4.8712 35 1 1.1950 -10.6229 6.4269 36 1 2.8237 -9.2845 2.7152 37 1 2.5512 -4.9683 3.1342 38 1 1.0683 -5.3485 4.1127 39 1 3.2982 -0.4628 4.2456 40 1 2.5524 1.0412 2.3427 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_9705378_13652106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:36:03 Heat of formation + Delta-G solvation = -97.522134 kcal Electronic energy + Delta-G solvation = -31152.301694 eV Core-core repulsion = 26403.690174 eV Total energy + Delta-G solvation = -4748.611520 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.045 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -50.06566 -50.03400 -41.26675 -40.01751 -39.05608 -38.37230 -37.16035 -37.01558 -34.40315 -31.74656 -31.39637 -31.26654 -28.06680 -26.73419 -26.42836 -24.29833 -23.94275 -23.10939 -21.72097 -20.67997 -20.00920 -19.79973 -18.86231 -18.59193 -18.11759 -17.98978 -17.41849 -17.22354 -17.03088 -16.75234 -16.73440 -16.35817 -16.35657 -16.02087 -15.88599 -15.78020 -15.35182 -15.12740 -15.00783 -14.44745 -14.25063 -13.93493 -13.80039 -13.72713 -13.65027 -13.49509 -13.35483 -13.25200 -13.01965 -12.96015 -12.73181 -12.71322 -12.55364 -12.30333 -12.00763 -11.87286 -11.57392 -11.30172 -10.63089 -10.58728 -10.36311 -9.88573 -9.79372 -9.57293 -5.09948 -0.83299 -0.62917 -0.08326 -0.06551 0.26566 0.72012 1.15021 1.31841 1.62066 1.83011 1.92833 2.27496 2.49132 2.79520 3.26549 3.31519 3.39692 3.45933 3.48723 3.56702 3.59218 3.79141 3.87733 3.93180 3.99710 4.05362 4.11045 4.14302 4.23488 4.29420 4.64185 4.73314 4.74636 4.76232 4.80052 4.81728 4.93432 4.95783 4.99352 5.04273 5.07914 5.13566 5.29107 5.49013 5.73550 5.92033 6.66769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.541 6.541 2 C -0.124 4.124 3 Si 0.819 3.181 4 C -0.005 4.005 5 C -0.799 4.799 6 S 2.725 3.275 7 O -0.960 6.960 8 O -0.993 6.993 9 N -1.090 6.090 10 C 0.107 3.893 11 H 0.115 0.885 12 C -0.129 4.129 13 C -0.071 4.071 14 H 0.120 0.880 15 C -0.007 4.007 16 C -0.156 4.156 17 C 0.120 3.880 18 F -0.139 7.139 19 C -0.207 4.207 20 C 0.116 3.884 21 F -0.142 7.142 22 C -0.158 4.158 23 C -0.148 4.148 24 S 0.245 5.755 25 C -0.158 4.158 26 C -0.170 4.170 27 H 0.399 0.601 28 H 0.094 0.906 29 H -0.275 1.275 30 H -0.292 1.292 31 H 0.431 0.569 32 H 0.112 0.888 33 H 0.085 0.915 34 H 0.166 0.834 35 H 0.149 0.851 36 H 0.157 0.843 37 H 0.088 0.912 38 H 0.121 0.879 39 H 0.212 0.788 40 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.798 2.939 7.074 7.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.349 6.349 2 C -0.234 4.234 3 Si 0.720 3.280 4 C -0.023 4.023 5 C -1.001 5.001 6 S 2.812 3.188 7 O -0.950 6.950 8 O -0.983 6.983 9 N -0.852 5.852 10 C -0.001 4.001 11 H 0.133 0.867 12 C -0.168 4.168 13 C -0.089 4.089 14 H 0.138 0.862 15 C -0.008 4.008 16 C -0.174 4.174 17 C 0.100 3.900 18 F -0.118 7.118 19 C -0.226 4.226 20 C 0.096 3.904 21 F -0.121 7.121 22 C -0.177 4.177 23 C -0.187 4.187 24 S 0.511 5.489 25 C -0.296 4.296 26 C -0.199 4.199 27 H 0.250 0.750 28 H 0.111 0.889 29 H -0.201 1.201 30 H -0.220 1.220 31 H 0.269 0.731 32 H 0.130 0.870 33 H 0.104 0.896 34 H 0.184 0.816 35 H 0.167 0.833 36 H 0.175 0.825 37 H 0.107 0.893 38 H 0.139 0.861 39 H 0.229 0.771 40 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 2.136 2.117 6.210 6.900 hybrid contribution 0.429 -0.052 -0.485 0.650 sum 2.565 2.065 5.725 6.605 Atomic orbital electron populations 1.86643 1.15490 1.82391 1.50392 1.25751 0.86883 1.14770 0.95989 0.93645 0.77607 0.71865 0.84849 1.19222 0.94426 0.91564 0.97084 1.35436 1.28100 1.14423 1.22191 1.00813 0.73256 0.72398 0.72303 1.93613 1.31287 1.84705 1.85358 1.93570 1.68194 1.86624 1.49931 1.55113 1.58401 1.29648 1.42085 1.21989 0.94594 0.99142 0.84359 0.86736 1.23460 0.97331 0.93256 1.02758 1.21703 1.00032 0.91850 0.95337 0.86152 1.19438 0.93051 0.93898 0.94372 1.21308 1.02164 1.00509 0.93438 1.17415 0.92225 0.94768 0.85542 1.91537 1.71479 1.95006 1.53761 1.21183 1.01025 0.99643 1.00761 1.17481 0.93758 0.83245 0.95896 1.91527 1.77045 1.47446 1.96070 1.21363 1.03048 0.93396 0.99886 1.23827 1.01697 0.94384 0.98828 1.84011 1.54964 1.05907 1.03973 1.26755 1.01745 0.96855 1.04206 1.20417 1.03827 1.03032 0.92615 0.74998 0.88880 1.20081 1.21982 0.73103 0.87004 0.89606 0.81614 0.83330 0.82486 0.89327 0.86076 0.77147 0.79918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -2.56 12.30 -148.10 -1.82 -4.38 16 2 C -0.12 -0.47 2.33 71.23 0.17 -0.31 16 3 Si 0.82 -1.65 30.25 68.60 2.07 0.42 16 4 C 0.00 -0.01 5.13 -20.92 -0.11 -0.11 16 5 C -0.80 -1.48 6.46 66.72 0.43 -1.05 16 6 S 2.72 15.89 5.04 -56.49 -0.28 15.60 16 7 O -0.96 -11.36 16.95 -125.69 -2.13 -13.49 16 8 O -0.99 -12.84 17.50 -128.00 -2.24 -15.08 16 9 N -1.09 3.75 5.54 -167.19 -0.93 2.83 16 10 C 0.11 -0.75 3.91 45.52 0.18 -0.57 16 11 H 0.11 -0.77 7.77 -2.39 -0.02 -0.79 16 12 C -0.13 1.13 7.33 31.12 0.23 1.36 16 13 C -0.07 0.70 3.80 -11.01 -0.04 0.65 16 14 H 0.12 -1.43 8.06 -2.39 -0.02 -1.45 16 15 C -0.01 0.05 5.29 -19.88 -0.11 -0.06 16 16 C -0.16 0.84 8.60 22.32 0.19 1.03 16 17 C 0.12 -0.08 7.30 22.37 0.16 0.08 16 18 F -0.14 -0.29 17.27 44.97 0.78 0.49 16 19 C -0.21 -0.07 10.01 22.36 0.22 0.15 16 20 C 0.12 0.06 7.30 22.37 0.16 0.22 16 21 F -0.14 -0.54 17.27 44.97 0.78 0.23 16 22 C -0.16 0.60 9.69 22.32 0.22 0.81 16 23 C -0.15 1.57 6.19 31.12 0.19 1.77 16 24 S 0.24 -1.46 19.55 -56.49 -1.10 -2.56 16 25 C -0.16 1.29 11.23 66.72 0.75 2.04 16 26 C -0.17 0.93 8.74 21.22 0.19 1.11 16 27 H 0.40 -2.20 8.70 -74.06 -0.64 -2.84 16 28 H 0.09 0.82 7.24 -2.39 -0.02 0.80 16 29 H -0.27 -0.47 7.11 99.48 0.71 0.24 16 30 H -0.29 -1.56 7.11 99.48 0.71 -0.85 16 31 H 0.43 -3.17 8.79 -96.74 -0.85 -4.02 16 32 H 0.11 -1.14 7.73 -2.39 -0.02 -1.16 16 33 H 0.09 -0.70 8.14 -2.39 -0.02 -0.72 16 34 H 0.17 -1.67 6.64 -2.91 -0.02 -1.69 16 35 H 0.15 -0.11 8.06 -2.91 -0.02 -0.14 16 36 H 0.16 -1.11 8.05 -2.91 -0.02 -1.14 16 37 H 0.09 -1.00 6.24 -2.39 -0.01 -1.01 16 38 H 0.12 -1.64 6.29 -2.39 -0.02 -1.65 16 39 H 0.21 -3.18 8.06 -2.91 -0.02 -3.20 16 40 H 0.18 -2.15 5.73 -2.91 -0.02 -2.16 16 Total: 0.00 -28.24 364.67 -2.35 -30.60 By element: Atomic # 1 Polarization: -21.47 SS G_CDS: -0.31 Total: -21.78 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: 2.83 Total: 7.13 kcal Atomic # 7 Polarization: 3.75 SS G_CDS: -0.93 Total: 2.83 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -6.19 Total: -32.95 kcal Atomic # 9 Polarization: -0.83 SS G_CDS: 1.55 Total: 0.72 kcal Atomic # 14 Polarization: -1.65 SS G_CDS: 2.07 Total: 0.42 kcal Atomic # 16 Polarization: 14.43 SS G_CDS: -1.39 Total: 13.04 kcal Total: -28.24 -2.35 -30.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9705378_13652106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.924 kcal (2) G-P(sol) polarization free energy of solvation -28.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds