Wall clock time and date at job start Mon Mar 8 2021 12:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33391 * 125.20765 * 2 1 4 4 C 1.50709 * 122.53611 * 359.97148 * 3 2 1 5 5 O 1.42895 * 109.46856 * 62.06695 * 4 3 2 6 6 Si 1.86302 * 109.46913 * 302.06400 * 4 3 2 7 7 C 1.38426 * 114.92149 * 180.20590 * 3 2 1 8 8 S 1.76199 * 122.53597 * 179.75845 * 7 3 2 9 9 O 1.42104 * 106.39895 * 162.86718 * 8 7 3 10 10 O 1.42099 * 106.40301 * 29.95425 * 8 7 3 11 11 N 1.65592 * 107.22240 * 276.40962 * 8 7 3 12 12 C 1.46507 * 120.00192 * 65.00081 * 11 8 7 13 13 H 1.09000 * 112.90270 * 346.25659 * 12 11 8 14 14 C 1.54043 * 113.61145 * 117.61867 * 12 11 8 15 15 C 1.53779 * 87.07716 * 89.07796 * 14 12 11 16 16 H 1.08999 * 113.68522 * 270.86535 * 15 14 12 17 17 C 1.50700 * 113.61580 * 139.97766 * 15 14 12 18 18 C 1.38211 * 119.97187 * 322.22845 * 17 15 14 19 19 C 1.38474 * 120.02008 * 179.72945 * 18 17 15 20 20 F 1.35099 * 120.01097 * 180.24916 * 19 18 17 21 21 C 1.38413 * 119.97792 * 0.54721 * 19 18 17 22 22 C 1.38425 * 119.94943 * 359.72158 * 21 19 18 23 23 F 1.35093 * 120.01138 * 180.02562 * 22 21 19 24 24 C 1.38210 * 119.97476 * 142.50162 * 17 15 14 25 25 C 1.53774 * 113.61648 * 215.00382 * 12 11 8 26 26 C 1.33379 * 114.91992 * 359.49738 * 7 3 2 27 27 C 1.50701 * 125.20199 * 180.24715 * 26 7 3 28 28 S 1.75884 * 125.20071 * 179.68886 * 2 1 3 29 29 H 1.09000 * 109.47214 * 181.65294 * 1 2 3 30 30 H 1.09001 * 109.47466 * 301.65681 * 1 2 3 31 31 H 1.09007 * 109.47207 * 61.65009 * 1 2 3 32 32 H 1.08999 * 109.46933 * 182.06498 * 4 3 2 33 33 H 0.96706 * 113.99823 * 179.97438 * 5 4 3 34 34 H 1.48493 * 110.00283 * 315.29175 * 6 4 3 35 35 H 1.48493 * 109.99835 * 76.61455 * 6 4 3 36 36 H 0.96996 * 120.00384 * 245.00091 * 11 8 7 37 37 H 1.09002 * 113.62569 * 334.52582 * 14 12 11 38 38 H 1.09004 * 113.69089 * 203.63331 * 14 12 11 39 39 H 1.07995 * 119.98872 * 359.97438 * 18 17 15 40 40 H 1.08000 * 120.02994 * 179.70833 * 21 19 18 41 41 H 1.07992 * 119.98705 * 359.97438 * 24 17 15 42 42 H 1.08999 * 113.61400 * 156.33315 * 25 12 11 43 43 H 1.09005 * 113.61431 * 25.51175 * 25 12 11 44 44 H 1.09009 * 109.47010 * 89.99558 * 27 26 7 45 45 H 1.08997 * 109.47227 * 209.99475 * 27 26 7 46 46 H 1.08999 * 109.46992 * 330.00068 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 1.7052 2.4847 -0.0006 5 8 0.9402 2.6868 1.1893 6 14 0.6076 2.7058 -1.4897 7 6 3.6380 0.8427 -0.0045 8 16 4.8356 2.1351 -0.0116 9 8 6.0653 1.5447 0.3867 10 8 4.2446 3.2336 0.6689 11 7 5.0336 2.6114 -1.5851 12 6 3.9218 3.2353 -2.3071 13 1 2.9655 3.1168 -1.7976 14 6 4.2102 4.6809 -2.7542 15 6 4.7859 4.0823 -4.0484 16 1 5.8490 3.8491 -3.9879 17 6 4.4277 4.8633 -5.2863 18 6 3.1734 5.4315 -5.4054 19 6 2.8451 6.1541 -6.5401 20 9 1.6207 6.7136 -6.6541 21 6 3.7696 6.2978 -7.5601 22 6 5.0236 5.7236 -7.4422 23 9 5.9271 5.8635 -8.4367 24 6 5.3517 5.0062 -6.3042 25 6 3.8740 2.8692 -3.7999 26 6 3.9750 -0.4478 0.0024 27 6 5.3860 -0.9772 0.0049 28 16 2.5208 -1.4372 0.0078 29 1 -0.3633 -1.0272 0.0296 30 1 -0.3634 0.5393 0.8747 31 1 -0.3634 0.4880 -0.9045 32 1 2.5181 3.2099 -0.0375 33 1 0.5423 3.5656 1.2565 34 1 1.2703 2.1491 -2.6963 35 1 -0.6941 2.0270 -1.2664 36 1 5.8856 2.4775 -2.0289 37 1 4.9536 5.1882 -2.1392 38 1 3.3120 5.2782 -2.9112 39 1 2.4505 5.3151 -4.6116 40 1 3.5128 6.8573 -8.4475 41 1 6.3301 4.5584 -6.2117 42 1 2.8831 2.9700 -4.2426 43 1 4.3456 1.9140 -4.0305 44 1 5.7265 -1.0991 1.0332 45 1 5.4133 -1.9409 -0.5036 46 1 6.0386 -0.2744 -0.5130 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_9705378_15065288.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:36:17 Heat of formation + Delta-G solvation = -87.432370 kcal Electronic energy + Delta-G solvation = -36544.876734 eV Core-core repulsion = 31485.627501 eV Total energy + Delta-G solvation = -5059.249233 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 416.076 amu Computer time = 3.08 seconds Orbital eigenvalues (eV) -50.04456 -50.02451 -41.49714 -40.25957 -39.19339 -38.52508 -37.16122 -36.96910 -34.51687 -34.37833 -31.84951 -31.37520 -31.00686 -28.23881 -26.97909 -26.65617 -25.99357 -24.02803 -23.29759 -23.15556 -21.13794 -20.70131 -20.01004 -19.42075 -18.89903 -18.44767 -18.19726 -18.13600 -17.56037 -17.41135 -17.09139 -17.02801 -16.75562 -16.40506 -16.32793 -16.12843 -16.01252 -15.68680 -15.36619 -15.21940 -15.13181 -14.75524 -14.60723 -14.48469 -14.21751 -14.04343 -13.87404 -13.80188 -13.76934 -13.55208 -13.41320 -13.19048 -13.13333 -13.07208 -13.03859 -12.88455 -12.78792 -12.54459 -12.20569 -12.14719 -12.00813 -11.67111 -11.55769 -11.45570 -10.76837 -10.37901 -10.04696 -9.99903 -9.86599 -9.48074 -5.15680 -0.84793 -0.47391 -0.17851 -0.14762 0.31762 0.60858 0.77068 1.16908 1.41869 1.79995 1.87787 2.17016 2.57004 2.72361 3.04794 3.15138 3.22772 3.24390 3.33298 3.34872 3.57203 3.60852 3.65642 3.67062 3.75660 3.84097 3.86192 3.97237 3.97941 4.05352 4.19300 4.34077 4.40224 4.44208 4.46274 4.48488 4.53219 4.57613 4.63091 4.68203 4.71058 4.80655 4.84091 4.88030 4.88635 4.93142 5.00968 5.06533 5.16343 5.23889 5.64125 5.69898 6.61693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.171 4.171 3 C -0.038 4.038 4 C -0.083 4.083 5 O -0.534 6.534 6 Si 0.645 3.355 7 C -0.683 4.683 8 S 2.705 3.295 9 O -0.948 6.948 10 O -0.936 6.936 11 N -1.096 6.096 12 C 0.117 3.883 13 H 0.097 0.903 14 C -0.143 4.143 15 C -0.075 4.075 16 H 0.109 0.891 17 C -0.013 4.013 18 C -0.165 4.165 19 C 0.137 3.863 20 F -0.128 7.128 21 C -0.197 4.197 22 C 0.136 3.864 23 F -0.129 7.129 24 C -0.161 4.161 25 C -0.138 4.138 26 C -0.049 4.049 27 C -0.115 4.115 28 S 0.161 5.839 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.106 0.894 33 H 0.384 0.616 34 H -0.240 1.240 35 H -0.229 1.229 36 H 0.422 0.578 37 H 0.090 0.910 38 H 0.105 0.895 39 H 0.146 0.854 40 H 0.149 0.851 41 H 0.143 0.857 42 H 0.101 0.899 43 H 0.084 0.916 44 H 0.100 0.900 45 H 0.081 0.919 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.190 -0.187 -2.595 2.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.289 4.289 3 C -0.048 4.048 4 C -0.195 4.195 5 O -0.340 6.340 6 Si 0.545 3.455 7 C -0.782 4.782 8 S 2.792 3.208 9 O -0.938 6.938 10 O -0.926 6.926 11 N -0.855 5.855 12 C 0.009 3.991 13 H 0.114 0.886 14 C -0.182 4.182 15 C -0.093 4.093 16 H 0.128 0.872 17 C -0.013 4.013 18 C -0.184 4.184 19 C 0.118 3.882 20 F -0.107 7.107 21 C -0.217 4.217 22 C 0.116 3.884 23 F -0.108 7.108 24 C -0.180 4.180 25 C -0.177 4.177 26 C -0.170 4.170 27 C -0.174 4.174 28 S 0.427 5.573 29 H 0.091 0.909 30 H 0.113 0.887 31 H 0.101 0.899 32 H 0.123 0.877 33 H 0.232 0.768 34 H -0.164 1.164 35 H -0.154 1.154 36 H 0.258 0.742 37 H 0.109 0.891 38 H 0.123 0.877 39 H 0.164 0.836 40 H 0.167 0.833 41 H 0.161 0.839 42 H 0.120 0.880 43 H 0.103 0.897 44 H 0.118 0.882 45 H 0.100 0.900 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.519 -2.422 -2.335 3.691 hybrid contribution 0.268 0.548 -0.360 0.708 sum -1.251 -1.875 -2.695 3.513 Atomic orbital electron populations 1.20800 0.87209 1.03477 1.04283 1.24451 1.00423 0.95157 1.08910 1.17492 0.89918 0.94676 1.02679 1.25148 1.01701 0.94555 0.98146 1.86447 1.69462 1.38342 1.39725 0.96582 0.81282 0.91147 0.76510 1.29401 1.11601 1.13516 1.23674 1.01729 0.73148 0.73591 0.72315 1.93605 1.42123 1.78090 1.79987 1.93549 1.77807 1.50557 1.70690 1.55402 1.21136 1.75500 1.33474 1.21904 0.88838 0.94611 0.93706 0.88595 1.23680 1.03000 0.95932 0.95608 1.21635 1.00842 0.95625 0.91241 0.87246 1.19297 0.92016 0.95237 0.94738 1.21078 0.98296 1.00782 0.98214 1.17234 0.80754 0.95551 0.94702 1.91566 1.40078 1.82873 1.96152 1.21098 0.93218 1.05826 1.01554 1.17286 0.86722 0.98158 0.86228 1.91562 1.65876 1.93931 1.59410 1.21123 1.01784 1.02063 0.92979 1.23527 1.01214 0.98541 0.94443 1.24589 1.00836 0.94886 0.96665 1.21008 0.88140 1.02675 1.05541 1.84414 0.95191 1.08394 1.69285 0.90869 0.88656 0.89940 0.87678 0.76819 1.16436 1.15432 0.74241 0.89147 0.87694 0.83601 0.83327 0.83913 0.88047 0.89689 0.88173 0.89993 0.87729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.09 8.75 36.00 0.32 0.22 16 2 C -0.17 -0.39 6.08 -36.01 -0.22 -0.61 16 3 C -0.04 -0.09 4.41 -106.24 -0.47 -0.56 16 4 C -0.08 -0.08 1.90 36.01 0.07 -0.01 16 5 O -0.53 -0.64 11.90 -35.23 -0.42 -1.06 16 6 Si 0.64 -1.02 27.38 -169.99 -4.65 -5.67 16 7 C -0.68 -1.45 5.86 -41.21 -0.24 -1.69 16 8 S 2.70 3.98 5.33 -107.50 -0.57 3.40 16 9 O -0.95 -2.91 14.67 -57.17 -0.84 -3.75 16 10 O -0.94 -3.48 14.63 -57.17 -0.84 -4.32 16 11 N -1.10 2.38 5.73 -4.08 -0.02 2.35 16 12 C 0.12 -0.31 4.38 -66.98 -0.29 -0.60 16 13 H 0.10 -0.21 1.78 -51.93 -0.09 -0.30 16 14 C -0.14 0.53 7.26 -25.78 -0.19 0.34 16 15 C -0.08 0.29 3.80 -90.96 -0.35 -0.06 16 16 H 0.11 -0.55 8.06 -51.93 -0.42 -0.97 16 17 C -0.01 0.03 5.29 -104.64 -0.55 -0.52 16 18 C -0.16 0.34 8.57 -39.50 -0.34 0.00 16 19 C 0.14 -0.06 7.30 -39.43 -0.29 -0.35 16 20 F -0.13 -0.09 17.27 2.25 0.04 -0.05 16 21 C -0.20 0.05 10.01 -39.45 -0.39 -0.34 16 22 C 0.14 0.00 7.30 -39.43 -0.29 -0.29 16 23 F -0.13 -0.18 17.27 2.25 0.04 -0.14 16 24 C -0.16 0.25 9.69 -39.51 -0.38 -0.13 16 25 C -0.14 0.49 7.32 -25.92 -0.19 0.30 16 26 C -0.05 -0.07 6.50 -36.01 -0.23 -0.30 16 27 C -0.12 0.05 9.15 36.01 0.33 0.38 16 28 S 0.16 0.17 23.31 -107.50 -2.51 -2.33 16 29 H 0.07 -0.02 8.14 -51.93 -0.42 -0.45 16 30 H 0.09 0.11 7.46 -51.93 -0.39 -0.27 16 31 H 0.08 0.05 4.41 -51.92 -0.23 -0.18 16 32 H 0.11 0.06 3.29 -51.93 -0.17 -0.11 16 33 H 0.38 -1.36 8.74 45.56 0.40 -0.96 16 34 H -0.24 0.20 6.99 56.52 0.39 0.59 16 35 H -0.23 -0.01 5.47 56.52 0.31 0.30 16 36 H 0.42 -1.92 8.79 -34.47 -0.30 -2.22 16 37 H 0.09 -0.32 8.14 -51.93 -0.42 -0.74 16 38 H 0.10 -0.53 6.32 -51.93 -0.33 -0.86 16 39 H 0.15 -0.61 6.67 -52.49 -0.35 -0.96 16 40 H 0.15 -0.18 8.06 -52.49 -0.42 -0.60 16 41 H 0.14 -0.44 8.05 -52.49 -0.42 -0.87 16 42 H 0.10 -0.37 7.64 -51.93 -0.40 -0.77 16 43 H 0.08 -0.33 8.14 -51.93 -0.42 -0.75 16 44 H 0.10 -0.05 8.14 -51.92 -0.42 -0.47 16 45 H 0.08 -0.19 8.14 -51.93 -0.42 -0.62 16 46 H 0.10 -0.08 5.96 -51.93 -0.31 -0.39 16 LS Contribution 389.46 15.07 5.87 5.87 Total: 0.00 -9.05 389.46 -12.46 -21.51 By element: Atomic # 1 Polarization: -6.75 SS G_CDS: -4.84 Total: -11.59 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -3.71 Total: -4.22 kcal Atomic # 7 Polarization: 2.38 SS G_CDS: -0.02 Total: 2.35 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: -2.09 Total: -9.13 kcal Atomic # 9 Polarization: -0.26 SS G_CDS: 0.08 Total: -0.19 kcal Atomic # 14 Polarization: -1.02 SS G_CDS: -4.65 Total: -5.67 kcal Atomic # 16 Polarization: 4.15 SS G_CDS: -3.08 Total: 1.07 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -9.05 -12.46 -21.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9705378_15065288.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.921 kcal (2) G-P(sol) polarization free energy of solvation -9.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.08 seconds