Wall clock time and date at job start Mon Mar 8 2021 12:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33391 * 125.20765 * 2 1 4 4 C 1.50709 * 122.53611 * 359.97148 * 3 2 1 5 5 O 1.42895 * 109.46856 * 62.06695 * 4 3 2 6 6 Si 1.86302 * 109.46913 * 302.06400 * 4 3 2 7 7 C 1.38426 * 114.92149 * 180.20590 * 3 2 1 8 8 S 1.76199 * 122.53597 * 179.75845 * 7 3 2 9 9 O 1.42104 * 106.39895 * 162.86718 * 8 7 3 10 10 O 1.42099 * 106.40301 * 29.95425 * 8 7 3 11 11 N 1.65592 * 107.22240 * 276.40962 * 8 7 3 12 12 C 1.46507 * 120.00192 * 65.00081 * 11 8 7 13 13 H 1.09000 * 112.90270 * 346.25659 * 12 11 8 14 14 C 1.54043 * 113.61145 * 117.61867 * 12 11 8 15 15 C 1.53779 * 87.07716 * 89.07796 * 14 12 11 16 16 H 1.08999 * 113.68522 * 270.86535 * 15 14 12 17 17 C 1.50700 * 113.61580 * 139.97766 * 15 14 12 18 18 C 1.38211 * 119.97187 * 322.22845 * 17 15 14 19 19 C 1.38474 * 120.02008 * 179.72945 * 18 17 15 20 20 F 1.35099 * 120.01097 * 180.24916 * 19 18 17 21 21 C 1.38413 * 119.97792 * 0.54721 * 19 18 17 22 22 C 1.38425 * 119.94943 * 359.72158 * 21 19 18 23 23 F 1.35093 * 120.01138 * 180.02562 * 22 21 19 24 24 C 1.38210 * 119.97476 * 142.50162 * 17 15 14 25 25 C 1.53774 * 113.61648 * 215.00382 * 12 11 8 26 26 C 1.33379 * 114.91992 * 359.49738 * 7 3 2 27 27 C 1.50701 * 125.20199 * 180.24715 * 26 7 3 28 28 S 1.75884 * 125.20071 * 179.68886 * 2 1 3 29 29 H 1.09000 * 109.47214 * 181.65294 * 1 2 3 30 30 H 1.09001 * 109.47466 * 301.65681 * 1 2 3 31 31 H 1.09007 * 109.47207 * 61.65009 * 1 2 3 32 32 H 1.08999 * 109.46933 * 182.06498 * 4 3 2 33 33 H 0.96706 * 113.99823 * 179.97438 * 5 4 3 34 34 H 1.48493 * 110.00283 * 315.29175 * 6 4 3 35 35 H 1.48493 * 109.99835 * 76.61455 * 6 4 3 36 36 H 0.96996 * 120.00384 * 245.00091 * 11 8 7 37 37 H 1.09002 * 113.62569 * 334.52582 * 14 12 11 38 38 H 1.09004 * 113.69089 * 203.63331 * 14 12 11 39 39 H 1.07995 * 119.98872 * 359.97438 * 18 17 15 40 40 H 1.08000 * 120.02994 * 179.70833 * 21 19 18 41 41 H 1.07992 * 119.98705 * 359.97438 * 24 17 15 42 42 H 1.08999 * 113.61400 * 156.33315 * 25 12 11 43 43 H 1.09005 * 113.61431 * 25.51175 * 25 12 11 44 44 H 1.09009 * 109.47010 * 89.99558 * 27 26 7 45 45 H 1.08997 * 109.47227 * 209.99475 * 27 26 7 46 46 H 1.08999 * 109.46992 * 330.00068 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 1.7052 2.4847 -0.0006 5 8 0.9402 2.6868 1.1893 6 14 0.6076 2.7058 -1.4897 7 6 3.6380 0.8427 -0.0045 8 16 4.8356 2.1351 -0.0116 9 8 6.0653 1.5447 0.3867 10 8 4.2446 3.2336 0.6689 11 7 5.0336 2.6114 -1.5851 12 6 3.9218 3.2353 -2.3071 13 1 2.9655 3.1168 -1.7976 14 6 4.2102 4.6809 -2.7542 15 6 4.7859 4.0823 -4.0484 16 1 5.8490 3.8491 -3.9879 17 6 4.4277 4.8633 -5.2863 18 6 3.1734 5.4315 -5.4054 19 6 2.8451 6.1541 -6.5401 20 9 1.6207 6.7136 -6.6541 21 6 3.7696 6.2978 -7.5601 22 6 5.0236 5.7236 -7.4422 23 9 5.9271 5.8635 -8.4367 24 6 5.3517 5.0062 -6.3042 25 6 3.8740 2.8692 -3.7999 26 6 3.9750 -0.4478 0.0024 27 6 5.3860 -0.9772 0.0049 28 16 2.5208 -1.4372 0.0078 29 1 -0.3633 -1.0272 0.0296 30 1 -0.3634 0.5393 0.8747 31 1 -0.3634 0.4880 -0.9045 32 1 2.5181 3.2099 -0.0375 33 1 0.5423 3.5656 1.2565 34 1 1.2703 2.1491 -2.6963 35 1 -0.6941 2.0270 -1.2664 36 1 5.8856 2.4775 -2.0289 37 1 4.9536 5.1882 -2.1392 38 1 3.3120 5.2782 -2.9112 39 1 2.4505 5.3151 -4.6116 40 1 3.5128 6.8573 -8.4475 41 1 6.3301 4.5584 -6.2117 42 1 2.8831 2.9700 -4.2426 43 1 4.3456 1.9140 -4.0305 44 1 5.7265 -1.0991 1.0332 45 1 5.4133 -1.9409 -0.5036 46 1 6.0386 -0.2744 -0.5130 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_9705378_15065288.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:36:15 Heat of formation + Delta-G solvation = -86.435077 kcal Electronic energy + Delta-G solvation = -36544.833488 eV Core-core repulsion = 31485.627501 eV Total energy + Delta-G solvation = -5059.205987 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 416.076 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -50.03697 -49.99085 -41.27026 -40.29316 -39.05927 -38.63711 -37.19639 -37.12613 -34.41306 -34.37304 -31.70750 -31.24021 -31.02436 -28.22806 -26.66081 -26.47732 -26.02695 -23.91257 -23.23036 -23.09972 -21.08644 -20.59000 -20.02302 -19.43054 -18.85743 -18.46105 -18.18723 -18.06488 -17.44413 -17.33628 -17.03117 -16.99276 -16.69698 -16.40676 -16.32005 -16.01955 -15.96933 -15.72136 -15.32523 -15.17004 -15.02283 -14.75069 -14.57717 -14.33716 -14.20675 -13.96998 -13.87481 -13.70019 -13.64742 -13.50468 -13.43506 -13.33190 -13.06701 -13.02038 -12.94402 -12.85761 -12.69322 -12.59682 -12.13729 -11.93478 -11.84056 -11.66969 -11.53146 -11.23619 -10.58209 -10.37399 -10.10965 -9.85770 -9.75898 -9.53028 -5.02396 -0.90037 -0.55388 -0.05226 -0.03057 0.26568 0.54502 0.71626 1.23034 1.53914 1.89424 1.90028 2.30589 2.51304 2.82806 3.07313 3.27928 3.29224 3.42100 3.52139 3.56589 3.60688 3.74204 3.82441 3.89304 3.91708 3.95798 4.01008 4.05138 4.05549 4.15605 4.23808 4.35469 4.45920 4.50469 4.59350 4.66028 4.75324 4.77986 4.80877 4.81348 4.83750 4.89699 4.98114 5.02295 5.04088 5.04769 5.11634 5.16448 5.30304 5.50858 5.76973 5.97940 6.83035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.193 4.193 3 C -0.052 4.052 4 C -0.107 4.107 5 O -0.555 6.555 6 Si 0.722 3.278 7 C -0.698 4.698 8 S 2.716 3.284 9 O -0.969 6.969 10 O -0.963 6.963 11 N -1.082 6.082 12 C 0.106 3.894 13 H 0.091 0.909 14 C -0.144 4.144 15 C -0.070 4.070 16 H 0.124 0.876 17 C -0.009 4.009 18 C -0.158 4.158 19 C 0.121 3.879 20 F -0.138 7.138 21 C -0.207 4.207 22 C 0.115 3.885 23 F -0.143 7.143 24 C -0.158 4.158 25 C -0.137 4.137 26 C -0.052 4.052 27 C -0.121 4.121 28 S 0.171 5.829 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.401 0.599 34 H -0.247 1.247 35 H -0.254 1.254 36 H 0.434 0.566 37 H 0.090 0.910 38 H 0.121 0.879 39 H 0.169 0.831 40 H 0.149 0.851 41 H 0.158 0.842 42 H 0.106 0.894 43 H 0.090 0.910 44 H 0.099 0.901 45 H 0.102 0.898 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.123 -0.427 -2.941 3.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.311 4.311 3 C -0.063 4.063 4 C -0.216 4.216 5 O -0.364 6.364 6 Si 0.622 3.378 7 C -0.797 4.797 8 S 2.804 3.196 9 O -0.959 6.959 10 O -0.953 6.953 11 N -0.845 5.845 12 C -0.002 4.002 13 H 0.109 0.891 14 C -0.183 4.183 15 C -0.088 4.088 16 H 0.142 0.858 17 C -0.009 4.009 18 C -0.177 4.177 19 C 0.102 3.898 20 F -0.116 7.116 21 C -0.226 4.226 22 C 0.095 3.905 23 F -0.121 7.121 24 C -0.176 4.176 25 C -0.176 4.176 26 C -0.174 4.174 27 C -0.179 4.179 28 S 0.437 5.563 29 H 0.101 0.899 30 H 0.107 0.893 31 H 0.103 0.897 32 H 0.123 0.877 33 H 0.251 0.749 34 H -0.171 1.171 35 H -0.180 1.180 36 H 0.272 0.728 37 H 0.108 0.892 38 H 0.139 0.861 39 H 0.186 0.814 40 H 0.167 0.833 41 H 0.176 0.824 42 H 0.125 0.875 43 H 0.109 0.891 44 H 0.117 0.883 45 H 0.121 0.879 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.430 -2.647 -2.665 4.019 hybrid contribution 0.250 0.606 -0.208 0.687 sum -1.180 -2.041 -2.873 3.716 Atomic orbital electron populations 1.20820 0.86683 1.04117 1.04132 1.24692 1.01103 0.95647 1.09633 1.17811 0.90229 0.95658 1.02557 1.25560 1.02744 0.93829 0.99489 1.86394 1.69718 1.39964 1.40337 0.95775 0.78318 0.89713 0.74029 1.29516 1.11731 1.13961 1.24445 1.01181 0.72409 0.73057 0.72970 1.93571 1.42944 1.78388 1.80995 1.93516 1.78198 1.51482 1.72073 1.55069 1.22007 1.75090 1.32325 1.22071 0.88401 0.95596 0.94095 0.89091 1.23778 1.03801 0.95347 0.95375 1.21683 1.01707 0.95129 0.90269 0.85780 1.19447 0.91605 0.94933 0.94934 1.21361 0.98854 0.99475 0.97991 1.17396 0.80488 0.96501 0.95438 1.91539 1.40620 1.83206 1.96272 1.21187 0.93466 1.06058 1.01914 1.17486 0.86764 0.99467 0.86740 1.91524 1.66296 1.94199 1.60091 1.21353 1.02641 1.01233 0.92402 1.23564 1.01678 0.98935 0.93398 1.24873 1.01635 0.94874 0.95979 1.21140 0.87170 1.03806 1.05792 1.84278 0.94903 1.07964 1.69138 0.89850 0.89283 0.89668 0.87667 0.74863 1.17149 1.18032 0.72761 0.89163 0.86118 0.81375 0.83328 0.82413 0.87521 0.89132 0.88296 0.87945 0.87421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.23 8.75 71.23 0.62 0.40 16 2 C -0.19 -0.95 6.08 24.59 0.15 -0.80 16 3 C -0.05 -0.29 4.41 -20.91 -0.09 -0.38 16 4 C -0.11 -0.22 1.90 71.24 0.14 -0.09 16 5 O -0.55 -1.71 11.90 -148.98 -1.77 -3.48 16 6 Si 0.72 -2.74 27.38 68.60 1.88 -0.86 16 7 C -0.70 -3.25 5.86 21.21 0.12 -3.12 16 8 S 2.72 8.82 5.33 -56.49 -0.30 8.52 16 9 O -0.97 -6.36 14.67 -128.00 -1.88 -8.24 16 10 O -0.96 -7.81 14.63 -128.00 -1.87 -9.68 16 11 N -1.08 5.44 5.73 -166.82 -0.96 4.48 16 12 C 0.11 -0.68 4.38 45.60 0.20 -0.48 16 13 H 0.09 -0.48 1.78 -2.39 0.00 -0.49 16 14 C -0.14 1.31 7.26 31.21 0.23 1.54 16 15 C -0.07 0.68 3.80 -11.02 -0.04 0.63 16 16 H 0.12 -1.55 8.06 -2.39 -0.02 -1.57 16 17 C -0.01 0.06 5.29 -19.88 -0.11 -0.05 16 18 C -0.16 0.86 8.57 22.32 0.19 1.05 16 19 C 0.12 -0.12 7.30 22.37 0.16 0.05 16 20 F -0.14 -0.21 17.27 44.97 0.78 0.57 16 21 C -0.21 -0.03 10.01 22.36 0.22 0.20 16 22 C 0.11 0.03 7.30 22.37 0.16 0.20 16 23 F -0.14 -0.51 17.27 44.97 0.78 0.27 16 24 C -0.16 0.63 9.69 22.32 0.22 0.85 16 25 C -0.14 1.21 7.32 31.12 0.23 1.44 16 26 C -0.05 -0.15 6.50 24.59 0.16 0.01 16 27 C -0.12 0.12 9.15 71.24 0.65 0.77 16 28 S 0.17 0.40 23.31 -56.49 -1.32 -0.92 16 29 H 0.08 -0.04 8.14 -2.39 -0.02 -0.06 16 30 H 0.09 0.29 7.46 -2.39 -0.02 0.27 16 31 H 0.09 0.12 4.41 -2.38 -0.01 0.11 16 32 H 0.11 0.15 3.29 -2.39 -0.01 0.15 16 33 H 0.40 -2.65 8.74 -74.05 -0.65 -3.30 16 34 H -0.25 0.74 6.99 99.48 0.69 1.43 16 35 H -0.25 0.02 5.47 99.48 0.54 0.56 16 36 H 0.43 -4.40 8.79 -96.75 -0.85 -5.25 16 37 H 0.09 -0.77 8.14 -2.39 -0.02 -0.79 16 38 H 0.12 -1.50 6.32 -2.39 -0.02 -1.52 16 39 H 0.17 -1.77 6.67 -2.91 -0.02 -1.79 16 40 H 0.15 -0.15 8.06 -2.91 -0.02 -0.18 16 41 H 0.16 -1.19 8.05 -2.91 -0.02 -1.22 16 42 H 0.11 -1.02 7.64 -2.39 -0.02 -1.04 16 43 H 0.09 -0.87 8.14 -2.38 -0.02 -0.89 16 44 H 0.10 -0.06 8.14 -2.38 -0.02 -0.08 16 45 H 0.10 -0.57 8.14 -2.39 -0.02 -0.58 16 46 H 0.11 -0.17 5.96 -2.39 -0.01 -0.19 16 Total: 0.00 -21.55 389.46 -1.98 -23.53 By element: Atomic # 1 Polarization: -15.86 SS G_CDS: -0.53 Total: -16.39 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: 3.22 Total: 2.20 kcal Atomic # 7 Polarization: 5.44 SS G_CDS: -0.96 Total: 4.48 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -5.52 Total: -21.41 kcal Atomic # 9 Polarization: -0.71 SS G_CDS: 1.55 Total: 0.84 kcal Atomic # 14 Polarization: -2.74 SS G_CDS: 1.88 Total: -0.86 kcal Atomic # 16 Polarization: 9.22 SS G_CDS: -1.62 Total: 7.60 kcal Total: -21.55 -1.98 -23.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9705378_15065288.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.902 kcal (2) G-P(sol) polarization free energy of solvation -21.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds