Wall clock time and date at job start Mon Mar 8 2021 12:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86299 * 109.47237 * 2 1 4 4 C 1.50704 * 109.47132 * 119.99856 * 2 1 3 5 5 C 1.38215 * 119.99950 * 75.79312 * 4 2 1 6 6 S 1.76199 * 120.00239 * 0.02562 * 5 4 2 7 7 O 1.42097 * 106.40352 * 177.50374 * 6 5 4 8 8 O 1.42098 * 106.39933 * 310.42780 * 6 5 4 9 9 N 1.65596 * 107.21408 * 63.96293 * 6 5 4 10 10 C 1.46501 * 120.00293 * 63.48058 * 9 6 5 11 11 H 1.09005 * 112.84546 * 13.33322 * 10 9 6 12 12 C 1.53773 * 113.62036 * 144.53665 * 10 9 6 13 13 C 1.53780 * 87.08203 * 89.11591 * 12 10 9 14 14 H 1.09000 * 113.61262 * 270.88596 * 13 12 10 15 15 C 1.50705 * 113.61460 * 139.98325 * 13 12 10 16 16 C 1.38207 * 119.97142 * 299.72613 * 15 13 12 17 17 C 1.38472 * 120.01998 * 179.72503 * 16 15 13 18 18 F 1.35108 * 120.01405 * 180.25219 * 17 16 15 19 19 C 1.38422 * 119.97679 * 0.55063 * 17 16 15 20 20 C 1.38424 * 119.94916 * 359.72215 * 19 17 16 21 21 F 1.35097 * 120.01100 * 180.02562 * 20 19 17 22 22 C 1.38205 * 119.97278 * 119.99834 * 15 13 12 23 23 C 1.53774 * 87.08084 * 25.43423 * 13 12 10 24 24 C 1.38259 * 119.99651 * 179.97438 * 5 4 2 25 25 C 1.38214 * 120.00121 * 0.09134 * 24 5 4 26 26 C 1.38254 * 120.00243 * 359.97438 * 25 24 5 27 27 C 1.38215 * 119.99780 * 359.95190 * 26 25 24 28 28 H 0.96694 * 113.99789 * 305.14974 * 1 2 3 29 29 H 1.08996 * 109.47056 * 239.99298 * 2 1 3 30 30 H 1.48500 * 110.00013 * 178.68232 * 3 2 1 31 31 H 1.48503 * 109.99579 * 299.99730 * 3 2 1 32 32 H 0.97001 * 120.00652 * 243.47257 * 9 6 5 33 33 H 1.08998 * 113.61650 * 203.66496 * 12 10 9 34 34 H 1.09008 * 113.61434 * 334.48293 * 12 10 9 35 35 H 1.08000 * 119.98912 * 359.97438 * 16 15 13 36 36 H 1.08000 * 120.02532 * 179.70621 * 19 17 16 37 37 H 1.08004 * 119.99071 * 359.97438 * 22 15 13 38 38 H 1.09000 * 113.61540 * 220.01733 * 23 13 12 39 39 H 1.09001 * 113.61762 * 89.11655 * 23 13 12 40 40 H 1.08003 * 119.99866 * 180.36574 * 24 5 4 41 41 H 1.08000 * 119.99486 * 179.97438 * 25 24 5 42 42 H 1.07998 * 120.00074 * 179.97438 * 26 25 24 43 43 H 1.07999 * 119.99968 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.8847 -2.0900 1.2994 6 16 1.2386 -3.0183 -0.0517 7 8 1.3811 -4.3882 0.2981 8 8 -0.0098 -2.4268 -0.3843 9 7 2.2382 -2.7599 -1.3464 10 6 3.6356 -3.1965 -1.2917 11 1 3.8355 -3.8725 -0.4603 12 6 4.1766 -3.7010 -2.6398 13 6 4.5865 -2.2475 -2.9299 14 1 3.8068 -1.6633 -3.4186 15 6 5.9261 -2.1221 -3.6089 16 6 7.0632 -2.6014 -2.9865 17 6 8.2937 -2.4918 -3.6119 18 9 9.4045 -2.9649 -3.0056 19 6 8.3863 -1.8917 -4.8559 20 6 7.2475 -1.4070 -5.4758 21 9 7.3363 -0.8216 -6.6901 22 6 6.0172 -1.5229 -4.8510 23 6 4.6463 -2.0432 -1.4070 24 6 2.3461 -2.7417 2.4281 25 6 2.8522 -2.0135 3.4883 26 6 2.8975 -0.6334 3.4199 27 6 2.4377 0.0180 2.2909 28 1 -0.3933 0.5086 0.7223 29 1 1.7923 -0.5139 -0.8899 30 1 3.5346 1.7702 0.0321 31 1 1.5615 2.4678 -1.2086 32 1 1.8986 -2.3195 -2.1411 33 1 5.0221 -4.3822 -2.5436 34 1 3.4022 -4.0793 -3.3072 35 1 6.9914 -3.0651 -2.0138 36 1 9.3463 -1.8016 -5.3423 37 1 5.1285 -1.1451 -5.3346 38 1 4.2508 -1.0817 -1.0796 39 1 5.6201 -2.2711 -0.9737 40 1 2.3152 -3.8201 2.4796 41 1 3.2122 -2.5227 4.3701 42 1 3.2926 -0.0644 4.2485 43 1 2.4735 1.0961 2.2373 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_9705378_2726874.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:36:21 Heat of formation + Delta-G solvation = -98.224586 kcal Electronic energy + Delta-G solvation = -33429.368558 eV Core-core repulsion = 28591.574331 eV Total energy + Delta-G solvation = -4837.794227 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 382.088 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -50.12168 -50.09225 -41.30880 -40.62199 -39.08505 -38.45631 -37.41400 -36.94549 -34.39812 -32.76686 -32.34681 -31.76831 -31.32913 -26.98165 -26.73223 -26.42460 -24.37288 -24.00210 -23.14727 -22.73399 -20.96703 -20.49915 -19.41258 -18.81840 -18.39540 -18.16713 -18.01556 -17.49291 -17.24068 -17.08922 -16.84998 -16.79219 -16.48875 -16.41414 -15.98542 -15.84841 -15.73187 -15.51144 -15.40747 -15.03807 -14.94147 -14.39415 -14.22960 -13.86513 -13.81353 -13.61995 -13.49903 -13.45216 -13.21475 -13.10543 -13.04504 -12.99547 -12.76912 -12.71650 -12.21878 -12.18636 -12.00857 -11.86775 -11.55264 -11.34303 -10.57599 -10.45616 -10.39843 -10.01384 -9.94959 -9.85911 -5.04643 -0.70359 -0.24140 -0.14470 -0.13170 0.17969 1.19110 1.62289 1.87010 1.92908 2.21045 2.43287 2.69237 2.73229 3.20638 3.29576 3.34529 3.42784 3.51852 3.54951 3.60248 3.72292 3.83782 3.84606 3.87352 3.97810 4.02149 4.06502 4.12010 4.21484 4.35521 4.39051 4.58812 4.62038 4.68241 4.69665 4.74978 4.75512 4.83515 4.89737 4.93002 4.98610 5.02796 5.04134 5.20993 5.24747 5.34187 5.43568 5.67056 5.79880 5.94101 6.79000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.525 6.525 2 C -0.123 4.123 3 Si 0.779 3.221 4 C -0.024 4.024 5 C -0.663 4.663 6 S 2.693 3.307 7 O -0.993 6.993 8 O -0.956 6.956 9 N -1.094 6.094 10 C 0.118 3.882 11 H 0.113 0.887 12 C -0.129 4.129 13 C -0.075 4.075 14 H 0.117 0.883 15 C -0.009 4.009 16 C -0.157 4.157 17 C 0.121 3.879 18 F -0.139 7.139 19 C -0.205 4.205 20 C 0.117 3.883 21 F -0.141 7.141 22 C -0.160 4.160 23 C -0.146 4.146 24 C -0.039 4.039 25 C -0.137 4.137 26 C -0.054 4.054 27 C -0.138 4.138 28 H 0.388 0.612 29 H 0.111 0.889 30 H -0.268 1.268 31 H -0.292 1.292 32 H 0.426 0.574 33 H 0.109 0.891 34 H 0.086 0.914 35 H 0.164 0.836 36 H 0.151 0.849 37 H 0.156 0.844 38 H 0.079 0.921 39 H 0.112 0.888 40 H 0.141 0.859 41 H 0.156 0.844 42 H 0.166 0.834 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.347 4.247 5.505 7.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.331 6.331 2 C -0.232 4.232 3 Si 0.681 3.319 4 C -0.025 4.025 5 C -0.752 4.752 6 S 2.786 3.214 7 O -0.983 6.983 8 O -0.946 6.946 9 N -0.855 5.855 10 C 0.010 3.990 11 H 0.130 0.870 12 C -0.169 4.169 13 C -0.093 4.093 14 H 0.135 0.865 15 C -0.009 4.009 16 C -0.176 4.176 17 C 0.101 3.899 18 F -0.117 7.117 19 C -0.225 4.225 20 C 0.098 3.902 21 F -0.119 7.119 22 C -0.179 4.179 23 C -0.185 4.185 24 C -0.058 4.058 25 C -0.156 4.156 26 C -0.071 4.071 27 C -0.156 4.156 28 H 0.237 0.763 29 H 0.128 0.872 30 H -0.193 1.193 31 H -0.220 1.220 32 H 0.264 0.736 33 H 0.128 0.872 34 H 0.104 0.896 35 H 0.181 0.819 36 H 0.169 0.831 37 H 0.174 0.826 38 H 0.097 0.903 39 H 0.130 0.870 40 H 0.159 0.841 41 H 0.173 0.827 42 H 0.184 0.816 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 2.254 3.831 4.697 6.467 hybrid contribution 0.722 -0.095 -0.694 1.006 sum 2.976 3.736 4.003 6.232 Atomic orbital electron populations 1.86833 1.15153 1.76670 1.54458 1.25772 0.87433 1.13244 0.96776 0.93540 0.78615 0.74049 0.85667 1.20103 0.93905 0.91835 0.96691 1.30486 1.19735 1.06677 1.18341 1.01694 0.73048 0.73137 0.73560 1.93546 1.86718 1.33768 1.84304 1.93695 1.39725 1.78076 1.83125 1.55266 1.22177 1.76080 1.31971 1.21802 0.79290 0.97069 1.00828 0.86959 1.23452 1.02089 0.95439 0.95874 1.21716 0.92963 0.98972 0.95655 0.86492 1.19453 0.95134 0.93814 0.92506 1.21284 0.89928 1.03617 1.02722 1.17404 0.83285 0.97644 0.91528 1.91540 1.51392 1.86066 1.82708 1.21187 1.00281 1.04437 0.96546 1.17462 0.94428 0.96728 0.81596 1.91529 1.97079 1.81712 1.41627 1.21355 0.96945 1.02994 0.96590 1.23705 1.00711 0.99574 0.94523 1.21209 0.91949 1.00969 0.91692 1.21696 0.99700 0.95001 0.99216 1.21903 0.92936 0.94664 0.97644 1.21450 0.99868 1.00854 0.93395 0.76298 0.87204 1.19334 1.21959 0.73646 0.87219 0.89578 0.81869 0.83084 0.82591 0.90263 0.86958 0.84093 0.82680 0.81606 0.81960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 -0.96 10.60 -127.44 -1.35 -2.31 16 2 C -0.12 0.23 1.87 71.24 0.13 0.36 16 3 Si 0.78 -4.29 29.85 68.60 2.05 -2.25 16 4 C -0.02 0.05 5.27 -19.86 -0.10 -0.06 16 5 C -0.66 -0.71 5.85 22.27 0.13 -0.58 16 6 S 2.69 12.25 4.94 -56.49 -0.28 11.97 16 7 O -0.99 -10.19 16.56 -128.00 -2.12 -12.31 16 8 O -0.96 -10.46 15.00 -119.16 -1.79 -12.25 16 9 N -1.09 2.96 4.44 -167.20 -0.74 2.21 16 10 C 0.12 -0.67 4.49 45.52 0.20 -0.46 16 11 H 0.11 -0.65 7.82 -2.38 -0.02 -0.67 16 12 C -0.13 0.93 7.33 31.12 0.23 1.15 16 13 C -0.07 0.56 3.80 -11.01 -0.04 0.52 16 14 H 0.12 -1.09 8.05 -2.39 -0.02 -1.11 16 15 C -0.01 0.04 5.29 -19.88 -0.11 -0.07 16 16 C -0.16 0.52 8.60 22.32 0.19 0.72 16 17 C 0.12 0.10 7.30 22.37 0.16 0.26 16 18 F -0.14 -0.46 17.27 44.97 0.78 0.31 16 19 C -0.20 -0.31 10.01 22.36 0.22 -0.09 16 20 C 0.12 0.21 7.30 22.37 0.16 0.37 16 21 F -0.14 -0.68 17.27 44.97 0.78 0.10 16 22 C -0.16 0.31 9.69 22.32 0.22 0.53 16 23 C -0.15 1.14 7.25 31.12 0.23 1.37 16 24 C -0.04 0.02 9.55 22.27 0.21 0.23 16 25 C -0.14 0.69 10.05 22.27 0.22 0.91 16 26 C -0.05 0.41 10.05 22.27 0.22 0.63 16 27 C -0.14 0.90 8.66 22.27 0.19 1.10 16 28 H 0.39 -2.53 8.61 -74.06 -0.64 -3.16 16 29 H 0.11 -0.27 5.83 -2.39 -0.01 -0.29 16 30 H -0.27 0.72 7.11 99.48 0.71 1.43 16 31 H -0.29 -0.61 7.11 99.48 0.71 0.10 16 32 H 0.43 -2.46 8.50 -96.74 -0.82 -3.28 16 33 H 0.11 -0.94 7.73 -2.39 -0.02 -0.95 16 34 H 0.09 -0.58 8.14 -2.38 -0.02 -0.59 16 35 H 0.16 -1.25 6.64 -2.91 -0.02 -1.27 16 36 H 0.15 0.00 8.06 -2.91 -0.02 -0.02 16 37 H 0.16 -0.81 8.05 -2.91 -0.02 -0.83 16 38 H 0.08 -0.59 8.14 -2.39 -0.02 -0.61 16 39 H 0.11 -1.11 6.29 -2.39 -0.02 -1.13 16 40 H 0.14 -0.08 7.34 -2.91 -0.02 -0.10 16 41 H 0.16 -1.47 8.06 -2.91 -0.02 -1.49 16 42 H 0.17 -2.27 8.06 -2.91 -0.02 -2.29 16 43 H 0.16 -2.04 5.16 -2.91 -0.02 -2.06 16 Total: 0.00 -25.44 372.96 -0.52 -25.95 By element: Atomic # 1 Polarization: -18.02 SS G_CDS: -0.32 Total: -18.34 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: 2.48 Total: 6.91 kcal Atomic # 7 Polarization: 2.96 SS G_CDS: -0.74 Total: 2.21 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -5.26 Total: -26.87 kcal Atomic # 9 Polarization: -1.14 SS G_CDS: 1.55 Total: 0.41 kcal Atomic # 14 Polarization: -4.29 SS G_CDS: 2.05 Total: -2.25 kcal Atomic # 16 Polarization: 12.25 SS G_CDS: -0.28 Total: 11.97 kcal Total: -25.44 -0.52 -25.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9705378_2726874.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.270 kcal (2) G-P(sol) polarization free energy of solvation -25.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds