Wall clock time and date at job start Mon Mar 8 2021 13:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38207 * 119.99849 * 2 1 4 4 C 1.50704 * 120.00358 * 359.97438 * 3 2 1 5 5 H 1.08996 * 112.84446 * 10.92728 * 4 3 2 6 6 C 1.54051 * 113.61930 * 142.23423 * 4 3 2 7 7 C 1.53773 * 86.98532 * 139.98098 * 6 4 3 8 8 H 1.09004 * 113.61143 * 219.97866 * 7 6 4 9 9 N 1.46501 * 113.61618 * 89.16141 * 7 6 4 10 10 S 1.65603 * 120.00022 * 116.76726 * 9 7 6 11 11 O 1.42099 * 106.40154 * 310.62574 * 10 9 7 12 12 O 1.42097 * 106.40013 * 177.70851 * 10 9 7 13 13 C 1.76200 * 107.21771 * 64.16706 * 10 9 7 14 14 C 1.33384 * 122.53755 * 67.42513 * 13 10 9 15 15 C 1.50706 * 125.20463 * 0.02562 * 14 13 10 16 16 O 1.42905 * 109.47060 * 313.30031 * 15 14 13 17 17 Si 1.86301 * 109.47240 * 193.30254 * 15 14 13 18 18 S 1.75883 * 109.59411 * 179.75082 * 14 13 10 19 19 C 1.75884 * 90.96999 * 0.22695 * 18 14 13 20 20 C 1.33388 * 109.59452 * 0.02562 * 19 18 14 21 21 C 1.53777 * 87.17549 * 334.56886 * 7 6 4 22 22 C 1.38264 * 119.99988 * 179.72628 * 3 2 1 23 23 C 1.38217 * 119.99619 * 0.25132 * 22 3 2 24 24 C 1.38255 * 119.99958 * 0.02562 * 23 22 3 25 25 C 1.38211 * 120.00074 * 0.02562 * 24 23 22 26 26 H 1.09000 * 109.47507 * 89.99858 * 1 2 3 27 27 H 1.09001 * 109.47365 * 210.00560 * 1 2 3 28 28 H 1.09007 * 109.46990 * 329.99681 * 1 2 3 29 29 H 1.09003 * 113.61237 * 25.47531 * 6 4 3 30 30 H 1.09003 * 113.69482 * 254.50284 * 6 4 3 31 31 H 0.97005 * 119.99997 * 296.77326 * 9 7 6 32 32 H 1.08992 * 109.47178 * 73.29962 * 15 14 13 33 33 H 0.96701 * 113.99846 * 294.02639 * 16 15 14 34 34 H 1.48490 * 110.00168 * 179.97438 * 17 15 14 35 35 H 1.48498 * 109.99717 * 301.31880 * 17 15 14 36 36 H 1.07998 * 125.20408 * 179.97438 * 19 18 14 37 37 H 1.08002 * 122.54467 * 179.97438 * 20 19 18 38 38 H 1.09000 * 113.61585 * 140.01888 * 21 7 6 39 39 H 1.08996 * 113.61833 * 270.84324 * 21 7 6 40 40 H 1.07998 * 120.00013 * 180.26983 * 22 3 2 41 41 H 1.07997 * 119.99695 * 180.02562 * 23 22 3 42 42 H 1.08003 * 120.00200 * 180.02562 * 24 23 22 43 43 H 1.08003 * 119.99727 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1969 0.0000 4 6 1.4445 2.5021 -0.0006 5 1 0.3788 2.3755 0.1894 6 6 2.1019 3.5947 0.8639 7 6 1.7303 4.5864 -0.2511 8 1 2.5051 5.3258 -0.4538 9 7 0.4028 5.1838 -0.0866 10 16 0.2524 6.8170 0.1425 11 8 1.1630 7.1626 1.1772 12 8 -1.1412 7.0858 0.2118 13 6 0.8389 7.6050 -1.3203 14 6 0.2061 7.5081 -2.4904 15 6 -1.0654 6.7351 -2.7291 16 8 -0.9546 5.4405 -2.1342 17 14 -1.3475 6.5542 -4.5618 18 16 1.0782 8.4270 -3.7105 19 6 2.2928 8.8995 -2.5294 20 6 1.9935 8.3684 -1.3430 21 6 1.7522 3.3905 -1.2176 22 6 3.5806 1.1970 0.0057 23 6 4.2717 -0.0001 0.0062 24 6 3.5804 -1.1973 0.0004 25 6 2.1983 -1.1973 -0.0064 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5139 29 1 3.1765 3.4632 0.9909 30 1 1.5831 3.7804 1.8043 31 1 -0.3881 4.6227 -0.1118 32 1 -1.9044 7.2692 -2.2833 33 1 -0.2868 4.8746 -2.5453 34 1 -2.5980 5.7931 -4.8105 35 1 -1.4327 7.8937 -5.1971 36 1 3.1503 9.5236 -2.7337 37 1 2.6034 8.5254 -0.4656 38 1 0.9510 3.4114 -1.9564 39 1 2.7309 3.2041 -1.6596 40 1 4.1206 2.1323 0.0101 41 1 5.3516 0.0000 0.0111 42 1 4.1203 -2.1327 0.0012 43 1 1.6583 -2.1326 -0.0105 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_9744656_14772022.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:42:29 Heat of formation + Delta-G solvation = -8.504109 kcal Electronic energy + Delta-G solvation = -29373.422964 eV Core-core repulsion = 25412.041887 eV Total energy + Delta-G solvation = -3961.381077 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.079 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -41.36033 -39.73278 -39.22019 -38.22281 -37.44886 -36.68064 -34.29728 -33.61738 -31.89406 -31.31378 -27.86292 -27.56890 -26.73941 -26.02511 -24.44622 -23.12219 -21.91745 -21.76627 -20.54234 -19.82585 -19.32492 -18.70393 -18.10725 -17.51586 -17.11401 -16.93159 -16.60808 -16.42314 -15.94577 -15.84368 -15.43635 -15.19971 -15.08484 -14.99704 -14.54160 -14.34391 -14.13716 -14.04369 -13.95413 -13.92875 -13.47844 -13.27115 -13.25045 -13.01866 -12.92096 -12.86869 -12.79919 -12.61922 -12.40789 -12.15733 -12.06299 -11.85162 -11.58407 -11.48643 -11.17861 -11.05967 -10.40257 -10.22875 -9.84274 -9.64340 -9.40364 -5.33066 -0.64317 -0.46964 0.28685 0.46492 0.51557 0.56232 0.95318 1.09309 1.39887 1.72863 2.10970 2.80323 2.83351 3.07971 3.21776 3.41215 3.55613 3.63977 3.65504 3.89934 3.97129 3.98701 4.03879 4.11288 4.16499 4.18633 4.22530 4.33359 4.38043 4.56948 4.61321 4.69151 4.69442 4.72097 4.79302 4.85796 4.88120 4.93819 5.00736 5.05451 5.09078 5.19533 5.27416 5.39325 5.63799 5.66793 5.80135 6.08784 6.14822 6.16202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.082 4.082 3 C -0.071 4.071 4 C -0.077 4.077 5 H 0.105 0.895 6 C -0.145 4.145 7 C 0.127 3.873 8 H 0.101 0.899 9 N -1.082 6.082 10 S 2.718 3.282 11 O -0.958 6.958 12 O -0.950 6.950 13 C -0.664 4.664 14 C -0.097 4.097 15 C -0.062 4.062 16 O -0.527 6.527 17 Si 0.665 3.335 18 S 0.152 5.848 19 C -0.211 4.211 20 C -0.077 4.077 21 C -0.134 4.134 22 C -0.114 4.114 23 C -0.124 4.124 24 C -0.121 4.121 25 C -0.120 4.120 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.424 0.576 32 H 0.149 0.851 33 H 0.380 0.620 34 H -0.226 1.226 35 H -0.233 1.233 36 H 0.175 0.825 37 H 0.159 0.841 38 H 0.078 0.922 39 H 0.096 0.904 40 H 0.123 0.877 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.145 -2.992 -5.306 6.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.082 4.082 3 C -0.072 4.072 4 C -0.095 4.095 5 H 0.123 0.877 6 C -0.184 4.184 7 C 0.019 3.981 8 H 0.119 0.881 9 N -0.843 5.843 10 S 2.803 3.197 11 O -0.948 6.948 12 O -0.940 6.940 13 C -0.763 4.763 14 C -0.218 4.218 15 C -0.174 4.174 16 O -0.334 6.334 17 Si 0.563 3.437 18 S 0.416 5.584 19 C -0.347 4.347 20 C -0.105 4.105 21 C -0.173 4.173 22 C -0.132 4.132 23 C -0.142 4.142 24 C -0.139 4.139 25 C -0.138 4.138 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.114 0.886 30 H 0.098 0.902 31 H 0.262 0.738 32 H 0.165 0.835 33 H 0.230 0.770 34 H -0.148 1.148 35 H -0.157 1.157 36 H 0.193 0.807 37 H 0.176 0.824 38 H 0.096 0.904 39 H 0.115 0.885 40 H 0.141 0.859 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.784 -1.712 -6.444 6.902 hybrid contribution 0.355 -0.136 1.235 1.292 sum 2.140 -1.847 -5.209 5.926 Atomic orbital electron populations 1.20882 0.91311 1.02940 1.02470 1.19790 0.96018 0.92653 0.99723 1.19529 0.93415 0.93828 1.00379 1.21695 0.99971 0.90607 0.97251 0.87750 1.23627 1.01891 0.94578 0.98339 1.21605 0.83796 0.95398 0.97313 0.88137 1.55324 1.13282 1.25892 1.89831 1.01374 0.73246 0.72179 0.72869 1.93598 1.66285 1.82728 1.52181 1.93592 1.30766 1.83482 1.86174 1.29985 1.08282 1.18582 1.19420 1.25061 1.00054 1.00749 0.95961 1.24985 0.94780 0.85096 1.12552 1.86571 1.62780 1.23175 1.60827 0.95018 0.88933 0.85833 0.73886 1.84469 1.17070 1.44794 1.12104 1.25905 1.04370 1.07965 0.96418 1.19797 0.95110 0.96395 0.99231 1.23455 1.03232 0.94342 0.96283 1.20992 0.93616 0.98105 1.00439 1.21140 0.99918 0.92550 1.00598 1.21158 0.94352 0.98187 1.00167 1.21059 0.94337 0.97541 1.00841 0.91031 0.91598 0.91087 0.88594 0.90178 0.73776 0.83454 0.77046 1.14839 1.15744 0.80746 0.82397 0.90355 0.88512 0.85947 0.86153 0.86188 0.86185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.18 9.53 36.01 0.34 0.52 16 2 C -0.08 -0.01 5.88 -104.63 -0.62 -0.63 16 3 C -0.07 0.03 5.29 -104.62 -0.55 -0.52 16 4 C -0.08 0.18 3.53 -90.81 -0.32 -0.14 16 5 H 0.10 -0.28 5.73 -51.93 -0.30 -0.58 16 6 C -0.15 0.26 7.27 -25.78 -0.19 0.07 16 7 C 0.13 -0.35 4.43 -67.12 -0.30 -0.65 16 8 H 0.10 -0.32 8.05 -51.93 -0.42 -0.74 16 9 N -1.08 1.80 3.86 -4.20 -0.02 1.78 16 10 S 2.72 5.31 4.88 -107.50 -0.52 4.78 16 11 O -0.96 -4.61 17.12 -57.17 -0.98 -5.58 16 12 O -0.95 -4.80 16.59 -61.18 -1.01 -5.81 16 13 C -0.66 -0.42 5.76 -41.21 -0.24 -0.65 16 14 C -0.10 0.04 5.78 -36.00 -0.21 -0.16 16 15 C -0.06 0.08 2.08 36.01 0.07 0.15 16 16 O -0.53 1.39 8.61 -40.33 -0.35 1.05 16 17 Si 0.67 -1.65 30.97 -169.99 -5.26 -6.92 16 18 S 0.15 -0.19 20.70 -107.50 -2.23 -2.42 16 19 C -0.21 0.22 11.23 29.04 0.33 0.55 16 20 C -0.08 -0.01 9.70 -41.21 -0.40 -0.41 16 21 C -0.13 0.54 7.33 -25.92 -0.19 0.35 16 22 C -0.11 0.04 8.62 -39.58 -0.34 -0.30 16 23 C -0.12 -0.01 10.05 -39.58 -0.40 -0.41 16 24 C -0.12 -0.05 10.05 -39.59 -0.40 -0.45 16 25 C -0.12 -0.06 9.70 -39.59 -0.38 -0.45 16 26 H 0.07 -0.15 8.14 -51.93 -0.42 -0.57 16 27 H 0.07 -0.10 8.09 -51.93 -0.42 -0.52 16 28 H 0.07 -0.15 5.99 -51.92 -0.31 -0.46 16 29 H 0.10 -0.21 6.32 -51.93 -0.33 -0.54 16 30 H 0.08 -0.05 8.14 -51.93 -0.42 -0.47 16 31 H 0.42 -1.17 7.78 -34.47 -0.27 -1.44 16 32 H 0.15 0.01 7.72 -51.93 -0.40 -0.39 16 33 H 0.38 -2.42 7.01 45.56 0.32 -2.10 16 34 H -0.23 0.01 7.11 56.52 0.40 0.41 16 35 H -0.23 0.08 7.11 56.52 0.40 0.49 16 36 H 0.18 -0.57 8.06 -52.49 -0.42 -0.99 16 37 H 0.16 -0.06 7.74 -52.49 -0.41 -0.47 16 38 H 0.08 -0.44 6.65 -51.93 -0.35 -0.79 16 39 H 0.10 -0.41 7.73 -51.93 -0.40 -0.81 16 40 H 0.12 -0.25 6.66 -52.49 -0.35 -0.60 16 41 H 0.12 -0.17 8.06 -52.49 -0.42 -0.59 16 42 H 0.12 -0.12 8.06 -52.48 -0.42 -0.55 16 43 H 0.12 -0.09 8.06 -52.48 -0.42 -0.52 16 LS Contribution 367.10 15.07 5.53 5.53 Total: 0.00 -8.98 367.10 -13.98 -22.96 By element: Atomic # 1 Polarization: -6.88 SS G_CDS: -5.36 Total: -12.24 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -3.79 Total: -3.14 kcal Atomic # 7 Polarization: 1.80 SS G_CDS: -0.02 Total: 1.78 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: -2.34 Total: -10.35 kcal Atomic # 14 Polarization: -1.65 SS G_CDS: -5.26 Total: -6.92 kcal Atomic # 16 Polarization: 5.11 SS G_CDS: -2.75 Total: 2.36 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -8.98 -13.98 -22.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9744656_14772022.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.460 kcal (2) G-P(sol) polarization free energy of solvation -8.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds