Wall clock time and date at job start Mon Mar 8 2021 13:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38207 * 119.99849 * 2 1 4 4 C 1.50704 * 120.00358 * 359.97438 * 3 2 1 5 5 H 1.08996 * 112.84446 * 10.92728 * 4 3 2 6 6 C 1.54051 * 113.61930 * 142.23423 * 4 3 2 7 7 C 1.53773 * 86.98532 * 139.98098 * 6 4 3 8 8 H 1.09004 * 113.61143 * 219.97866 * 7 6 4 9 9 N 1.46501 * 113.61618 * 89.16141 * 7 6 4 10 10 S 1.65603 * 120.00022 * 116.76726 * 9 7 6 11 11 O 1.42099 * 106.40154 * 310.62574 * 10 9 7 12 12 O 1.42097 * 106.40013 * 177.70851 * 10 9 7 13 13 C 1.76200 * 107.21771 * 64.16706 * 10 9 7 14 14 C 1.33384 * 122.53755 * 67.42513 * 13 10 9 15 15 C 1.50706 * 125.20463 * 0.02562 * 14 13 10 16 16 O 1.42905 * 109.47060 * 313.30031 * 15 14 13 17 17 Si 1.86301 * 109.47240 * 193.30254 * 15 14 13 18 18 S 1.75883 * 109.59411 * 179.75082 * 14 13 10 19 19 C 1.75884 * 90.96999 * 0.22695 * 18 14 13 20 20 C 1.33388 * 109.59452 * 0.02562 * 19 18 14 21 21 C 1.53777 * 87.17549 * 334.56886 * 7 6 4 22 22 C 1.38264 * 119.99988 * 179.72628 * 3 2 1 23 23 C 1.38217 * 119.99619 * 0.25132 * 22 3 2 24 24 C 1.38255 * 119.99958 * 0.02562 * 23 22 3 25 25 C 1.38211 * 120.00074 * 0.02562 * 24 23 22 26 26 H 1.09000 * 109.47507 * 89.99858 * 1 2 3 27 27 H 1.09001 * 109.47365 * 210.00560 * 1 2 3 28 28 H 1.09007 * 109.46990 * 329.99681 * 1 2 3 29 29 H 1.09003 * 113.61237 * 25.47531 * 6 4 3 30 30 H 1.09003 * 113.69482 * 254.50284 * 6 4 3 31 31 H 0.97005 * 119.99997 * 296.77326 * 9 7 6 32 32 H 1.08992 * 109.47178 * 73.29962 * 15 14 13 33 33 H 0.96701 * 113.99846 * 294.02639 * 16 15 14 34 34 H 1.48490 * 110.00168 * 179.97438 * 17 15 14 35 35 H 1.48498 * 109.99717 * 301.31880 * 17 15 14 36 36 H 1.07998 * 125.20408 * 179.97438 * 19 18 14 37 37 H 1.08002 * 122.54467 * 179.97438 * 20 19 18 38 38 H 1.09000 * 113.61585 * 140.01888 * 21 7 6 39 39 H 1.08996 * 113.61833 * 270.84324 * 21 7 6 40 40 H 1.07998 * 120.00013 * 180.26983 * 22 3 2 41 41 H 1.07997 * 119.99695 * 180.02562 * 23 22 3 42 42 H 1.08003 * 120.00200 * 180.02562 * 24 23 22 43 43 H 1.08003 * 119.99727 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1969 0.0000 4 6 1.4445 2.5021 -0.0006 5 1 0.3788 2.3755 0.1894 6 6 2.1019 3.5947 0.8639 7 6 1.7303 4.5864 -0.2511 8 1 2.5051 5.3258 -0.4538 9 7 0.4028 5.1838 -0.0866 10 16 0.2524 6.8170 0.1425 11 8 1.1630 7.1626 1.1772 12 8 -1.1412 7.0858 0.2118 13 6 0.8389 7.6050 -1.3203 14 6 0.2061 7.5081 -2.4904 15 6 -1.0654 6.7351 -2.7291 16 8 -0.9546 5.4405 -2.1342 17 14 -1.3475 6.5542 -4.5618 18 16 1.0782 8.4270 -3.7105 19 6 2.2928 8.8995 -2.5294 20 6 1.9935 8.3684 -1.3430 21 6 1.7522 3.3905 -1.2176 22 6 3.5806 1.1970 0.0057 23 6 4.2717 -0.0001 0.0062 24 6 3.5804 -1.1973 0.0004 25 6 2.1983 -1.1973 -0.0064 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5139 29 1 3.1765 3.4632 0.9909 30 1 1.5831 3.7804 1.8043 31 1 -0.3881 4.6227 -0.1118 32 1 -1.9044 7.2692 -2.2833 33 1 -0.2868 4.8746 -2.5453 34 1 -2.5980 5.7931 -4.8105 35 1 -1.4327 7.8937 -5.1971 36 1 3.1503 9.5236 -2.7337 37 1 2.6034 8.5254 -0.4656 38 1 0.9510 3.4114 -1.9564 39 1 2.7309 3.2041 -1.6596 40 1 4.1206 2.1323 0.0101 41 1 5.3516 0.0000 0.0111 42 1 4.1203 -2.1327 0.0012 43 1 1.6583 -2.1326 -0.0105 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_9744656_14772022.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:42:28 Heat of formation + Delta-G solvation = -6.344765 kcal Electronic energy + Delta-G solvation = -29373.329327 eV Core-core repulsion = 25412.041887 eV Total energy + Delta-G solvation = -3961.287440 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.079 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.22213 -39.64739 -39.11829 -38.38024 -37.39205 -36.93699 -34.21910 -33.53086 -31.80296 -31.23676 -27.75984 -27.50097 -26.51754 -25.89261 -24.37592 -23.03424 -21.86010 -21.73716 -20.47546 -19.77068 -19.22654 -18.73492 -18.08800 -17.44729 -17.05001 -16.83986 -16.51563 -16.33394 -15.94663 -15.80660 -15.34564 -15.16105 -15.01512 -14.89438 -14.43039 -14.24842 -14.05088 -13.94703 -13.88022 -13.80825 -13.35643 -13.26593 -13.23992 -13.15074 -13.11574 -12.84296 -12.80070 -12.54494 -12.35226 -12.12103 -11.95471 -11.71836 -11.52461 -11.34406 -11.00619 -10.91536 -10.28172 -10.16383 -9.75724 -9.59580 -9.33686 -5.15002 -0.67734 -0.48187 0.36475 0.51624 0.55551 0.64337 1.08466 1.12679 1.55651 1.87373 2.10439 2.72982 2.88611 3.23468 3.34145 3.49097 3.62902 3.80678 3.83111 4.04691 4.09232 4.12693 4.14412 4.23282 4.25350 4.31989 4.35680 4.40416 4.48030 4.67048 4.73492 4.80178 4.87335 4.91909 4.94526 4.96439 5.04148 5.13266 5.14419 5.16956 5.20507 5.28554 5.38749 5.56600 5.71034 5.71436 5.88009 6.21788 6.25728 6.56554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.096 4.096 3 C -0.076 4.076 4 C -0.077 4.077 5 H 0.108 0.892 6 C -0.153 4.153 7 C 0.125 3.875 8 H 0.108 0.892 9 N -1.069 6.069 10 S 2.727 3.273 11 O -0.994 6.994 12 O -0.988 6.988 13 C -0.670 4.670 14 C -0.101 4.101 15 C -0.073 4.073 16 O -0.533 6.533 17 Si 0.752 3.248 18 S 0.177 5.823 19 C -0.207 4.207 20 C -0.096 4.096 21 C -0.121 4.121 22 C -0.121 4.121 23 C -0.137 4.137 24 C -0.136 4.136 25 C -0.136 4.136 26 H 0.079 0.921 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.064 0.936 31 H 0.431 0.569 32 H 0.131 0.869 33 H 0.397 0.603 34 H -0.260 1.260 35 H -0.260 1.260 36 H 0.197 0.803 37 H 0.158 0.842 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.138 0.862 41 H 0.131 0.869 42 H 0.128 0.872 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.776 -2.994 -6.897 8.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.096 4.096 3 C -0.076 4.076 4 C -0.095 4.095 5 H 0.126 0.874 6 C -0.192 4.192 7 C 0.017 3.983 8 H 0.126 0.874 9 N -0.833 5.833 10 S 2.816 3.184 11 O -0.984 6.984 12 O -0.978 6.978 13 C -0.771 4.771 14 C -0.222 4.222 15 C -0.184 4.184 16 O -0.342 6.342 17 Si 0.652 3.348 18 S 0.441 5.559 19 C -0.343 4.343 20 C -0.124 4.124 21 C -0.160 4.160 22 C -0.139 4.139 23 C -0.155 4.155 24 C -0.154 4.154 25 C -0.154 4.154 26 H 0.098 0.902 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.119 0.881 30 H 0.083 0.917 31 H 0.270 0.730 32 H 0.148 0.852 33 H 0.250 0.750 34 H -0.185 1.185 35 H -0.186 1.186 36 H 0.214 0.786 37 H 0.175 0.825 38 H 0.119 0.881 39 H 0.123 0.877 40 H 0.155 0.845 41 H 0.149 0.851 42 H 0.146 0.854 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.425 -1.741 -7.993 8.532 hybrid contribution 0.169 -0.143 1.719 1.733 sum 2.594 -1.883 -6.274 7.045 Atomic orbital electron populations 1.20900 0.90372 1.03175 1.03033 1.20059 0.96929 0.92825 0.99799 1.19749 0.93622 0.94377 0.99837 1.21741 0.99879 0.89760 0.98166 0.87373 1.23697 1.02114 0.95368 0.98015 1.21723 0.83144 0.95841 0.97551 0.87426 1.54996 1.14196 1.24421 1.89668 1.00658 0.71964 0.72869 0.72939 1.93549 1.66791 1.83694 1.54348 1.93539 1.32801 1.84467 1.86979 1.29703 1.09024 1.19515 1.18908 1.25223 1.00174 1.00726 0.96060 1.25148 0.93941 0.85534 1.13790 1.86544 1.63599 1.22798 1.61235 0.94116 0.86721 0.82885 0.71101 1.84403 1.16392 1.43905 1.11230 1.26208 1.04815 1.07366 0.95913 1.19880 0.95351 0.97243 0.99905 1.23436 1.04530 0.92131 0.95897 1.21234 0.93889 0.98611 1.00118 1.21385 1.00689 0.92725 1.00706 1.21372 0.94615 0.98853 1.00574 1.21271 0.94665 0.98156 1.01351 0.90236 0.91712 0.90526 0.88148 0.91734 0.72970 0.85206 0.75036 1.18476 1.18620 0.78609 0.82484 0.88104 0.87671 0.84463 0.85071 0.85405 0.85611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.37 9.53 71.24 0.68 1.05 16 2 C -0.10 -0.04 5.88 -19.87 -0.12 -0.16 16 3 C -0.08 0.09 5.29 -19.86 -0.11 -0.02 16 4 C -0.08 0.40 3.53 -10.92 -0.04 0.37 16 5 H 0.11 -0.66 5.73 -2.39 -0.01 -0.67 16 6 C -0.15 0.54 7.27 31.21 0.23 0.76 16 7 C 0.13 -0.75 4.43 45.51 0.20 -0.55 16 8 H 0.11 -0.76 8.05 -2.39 -0.02 -0.78 16 9 N -1.07 3.41 3.86 -167.21 -0.65 2.77 16 10 S 2.73 13.62 4.88 -56.49 -0.28 13.34 16 11 O -0.99 -11.15 17.12 -128.00 -2.19 -13.34 16 12 O -0.99 -11.58 16.59 -124.17 -2.06 -13.64 16 13 C -0.67 -0.98 5.76 21.22 0.12 -0.86 16 14 C -0.10 0.13 5.78 24.59 0.14 0.27 16 15 C -0.07 0.19 2.08 71.24 0.15 0.34 16 16 O -0.53 3.11 8.61 -144.10 -1.24 1.87 16 17 Si 0.75 -4.23 30.97 68.60 2.12 -2.11 16 18 S 0.18 -0.66 20.70 -56.49 -1.17 -1.83 16 19 C -0.21 0.67 11.23 66.72 0.75 1.42 16 20 C -0.10 -0.02 9.70 21.22 0.21 0.18 16 21 C -0.12 1.17 7.33 31.12 0.23 1.40 16 22 C -0.12 0.13 8.62 22.27 0.19 0.32 16 23 C -0.14 -0.05 10.05 22.27 0.22 0.17 16 24 C -0.14 -0.19 10.05 22.27 0.22 0.03 16 25 C -0.14 -0.22 9.70 22.27 0.22 0.00 16 26 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 27 H 0.06 -0.19 8.09 -2.39 -0.02 -0.21 16 28 H 0.08 -0.34 5.99 -2.38 -0.01 -0.36 16 29 H 0.10 -0.46 6.32 -2.39 -0.02 -0.47 16 30 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 31 H 0.43 -2.40 7.78 -96.74 -0.75 -3.15 16 32 H 0.13 0.14 7.72 -2.39 -0.02 0.12 16 33 H 0.40 -5.76 7.01 -74.06 -0.52 -6.28 16 34 H -0.26 0.02 7.11 99.48 0.71 0.72 16 35 H -0.26 0.32 7.11 99.48 0.71 1.03 16 36 H 0.20 -1.62 8.06 -2.91 -0.02 -1.65 16 37 H 0.16 -0.02 7.74 -2.91 -0.02 -0.04 16 38 H 0.10 -1.41 6.65 -2.39 -0.02 -1.42 16 39 H 0.10 -1.11 7.73 -2.39 -0.02 -1.12 16 40 H 0.14 -0.67 6.66 -2.91 -0.02 -0.69 16 41 H 0.13 -0.36 8.06 -2.91 -0.02 -0.39 16 42 H 0.13 -0.18 8.06 -2.91 -0.02 -0.20 16 43 H 0.13 -0.10 8.06 -2.91 -0.02 -0.12 16 Total: 0.00 -22.00 367.10 -2.33 -24.33 By element: Atomic # 1 Polarization: -15.95 SS G_CDS: -0.17 Total: -16.11 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 3.30 Total: 4.72 kcal Atomic # 7 Polarization: 3.41 SS G_CDS: -0.65 Total: 2.77 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -5.49 Total: -25.10 kcal Atomic # 14 Polarization: -4.23 SS G_CDS: 2.12 Total: -2.11 kcal Atomic # 16 Polarization: 12.96 SS G_CDS: -1.44 Total: 11.51 kcal Total: -22.00 -2.33 -24.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9744656_14772022.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.982 kcal (2) G-P(sol) polarization free energy of solvation -22.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds