Wall clock time and date at job start Mon Mar 8 2021 13:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.33393 * 125.20637 * 2 1 4 4 C 1.50703 * 122.53615 * 359.97438 * 3 2 1 5 5 O 1.42895 * 109.47147 * 65.09775 * 4 3 2 6 6 Si 1.86301 * 109.47106 * 305.09518 * 4 3 2 7 7 C 1.38428 * 114.92345 * 180.20823 * 3 2 1 8 8 S 1.76192 * 122.53782 * 179.76266 * 7 3 2 9 9 O 1.42100 * 106.39920 * 161.97870 * 8 7 3 10 10 O 1.42101 * 106.40690 * 29.05472 * 8 7 3 11 11 N 1.65600 * 107.21894 * 275.51541 * 8 7 3 12 12 C 1.46502 * 119.99913 * 65.00182 * 11 8 7 13 13 H 1.08995 * 112.84687 * 15.33475 * 12 11 8 14 14 C 1.53783 * 113.61372 * 146.53338 * 12 11 8 15 15 C 1.53778 * 87.08483 * 89.11121 * 14 12 11 16 16 H 1.08993 * 113.61806 * 270.88344 * 15 14 12 17 17 C 1.50701 * 113.61352 * 140.06283 * 15 14 12 18 18 C 1.38208 * 119.99948 * 119.73121 * 17 15 14 19 19 C 1.50695 * 120.00320 * 359.97438 * 18 17 15 20 20 C 1.38266 * 119.99956 * 179.81183 * 18 17 15 21 21 C 1.38215 * 119.99782 * 0.39777 * 20 18 17 22 22 C 1.38257 * 120.00055 * 359.85127 * 21 20 18 23 23 C 1.38214 * 120.00170 * 359.96571 * 22 21 20 24 24 C 1.53784 * 113.61160 * 244.13659 * 12 11 8 25 25 C 1.33385 * 114.91566 * 359.49537 * 7 3 2 26 26 C 1.50708 * 125.19943 * 180.24587 * 25 7 3 27 27 S 1.75884 * 109.60102 * 0.26890 * 25 7 3 28 28 H 1.08996 * 109.47286 * 183.56841 * 1 2 3 29 29 H 1.08999 * 109.47025 * 303.56603 * 1 2 3 30 30 H 1.08999 * 109.47338 * 63.56320 * 1 2 3 31 31 H 1.09003 * 109.47031 * 185.10003 * 4 3 2 32 32 H 0.96700 * 114.00170 * 68.47454 * 5 4 3 33 33 H 1.48503 * 109.99915 * 315.39179 * 6 4 3 34 34 H 1.48505 * 109.99927 * 76.70871 * 6 4 3 35 35 H 0.97005 * 120.00274 * 245.00021 * 11 8 7 36 36 H 1.08995 * 113.61430 * 203.66882 * 14 12 11 37 37 H 1.09001 * 113.61104 * 334.56549 * 14 12 11 38 38 H 1.09005 * 109.46812 * 89.99926 * 19 18 17 39 39 H 1.08995 * 109.47686 * 210.00230 * 19 18 17 40 40 H 1.09003 * 109.46998 * 330.00388 * 19 18 17 41 41 H 1.07989 * 120.00040 * 180.22724 * 20 18 17 42 42 H 1.07997 * 120.00054 * 179.83696 * 21 20 18 43 43 H 1.07995 * 120.00188 * 179.97438 * 22 21 20 44 44 H 1.08003 * 120.00379 * 179.97438 * 23 22 21 45 45 H 1.08996 * 113.61682 * 25.43470 * 24 12 11 46 46 H 1.09000 * 113.61157 * 156.33405 * 24 12 11 47 47 H 1.08993 * 109.46967 * 89.99938 * 26 25 7 48 48 H 1.08997 * 109.47034 * 210.00395 * 26 25 7 49 49 H 1.09003 * 109.47061 * 330.00134 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 1.7052 2.4847 -0.0006 5 8 0.9993 2.7110 1.2211 6 14 0.5359 2.6765 -1.4382 7 6 3.6380 0.8428 -0.0046 8 16 4.8356 2.1352 -0.0116 9 8 6.0607 1.5492 0.4068 10 8 4.2368 3.2408 0.6505 11 7 5.0514 2.5950 -1.5877 12 6 3.9479 3.2109 -2.3288 13 1 3.1418 3.5536 -1.6801 14 6 4.4050 4.2639 -3.3521 15 6 4.5160 3.1144 -4.3677 16 1 5.4922 2.6298 -4.3738 17 6 4.0357 3.4804 -5.7484 18 6 4.9037 3.4147 -6.8220 19 6 6.3304 2.9776 -6.6118 20 6 4.4620 3.7467 -8.0894 21 6 3.1547 4.1523 -8.2815 22 6 2.2879 4.2230 -7.2067 23 6 2.7283 3.8874 -5.9403 24 6 3.4635 2.3716 -3.5228 25 6 3.9750 -0.4477 0.0024 26 6 5.3860 -0.9771 0.0047 27 16 2.5209 -1.4372 0.0077 28 1 -0.3633 -1.0256 0.0640 29 1 -0.3633 0.5682 0.8563 30 1 -0.3634 0.4575 -0.9202 31 1 2.5149 3.2086 -0.0918 32 1 1.5683 2.7556 2.0017 33 1 1.1380 2.0933 -2.6640 34 1 -0.7539 2.0049 -1.1369 35 1 5.9085 2.4565 -2.0204 36 1 3.6349 4.9939 -3.6012 37 1 5.3624 4.7239 -3.1072 38 1 6.3992 1.8955 -6.7238 39 1 6.9710 3.4607 -7.3496 40 1 6.6532 3.2603 -5.6097 41 1 5.1392 3.6918 -8.9288 42 1 2.8104 4.4142 -9.2710 43 1 1.2665 4.5403 -7.3567 44 1 2.0513 3.9431 -5.1007 45 1 3.6611 1.3051 -3.4157 46 1 2.4363 2.5851 -3.8185 47 1 5.7266 -1.0991 1.0329 48 1 5.4134 -1.9408 -0.5039 49 1 6.0387 -0.2743 -0.5132 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_9744656_15065288.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:42:38 Heat of formation + Delta-G solvation = -7.780674 kcal Electronic energy + Delta-G solvation = -34290.547251 eV Core-core repulsion = 30018.122306 eV Total energy + Delta-G solvation = -4272.424944 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 394.111 amu Computer time = 3.03 seconds Orbital eigenvalues (eV) -41.47176 -40.29233 -39.34135 -38.55343 -37.01553 -36.94805 -34.50734 -34.33974 -33.70074 -31.41751 -30.95830 -28.11575 -27.89346 -26.90687 -26.17166 -25.91753 -23.29940 -23.18175 -21.96161 -21.05898 -20.44463 -19.93773 -19.25387 -18.59497 -18.09319 -17.61151 -17.38837 -16.90279 -16.66561 -16.37556 -16.01663 -15.95714 -15.44197 -15.32437 -15.13230 -15.01599 -14.84618 -14.68644 -14.53837 -14.29005 -14.15211 -14.01365 -13.94563 -13.71696 -13.56987 -13.42960 -13.31255 -13.27936 -13.15725 -13.06242 -12.93374 -12.72754 -12.62392 -12.43407 -12.13281 -11.96290 -11.72185 -11.68510 -11.42696 -11.33135 -11.18844 -10.82608 -10.67945 -10.05373 -9.68213 -9.54259 -9.43981 -4.91428 -0.84080 -0.46755 0.32892 0.42388 0.48281 0.65092 0.82852 1.28409 1.57819 1.88574 1.95227 2.57722 2.78502 3.12752 3.30219 3.41364 3.46799 3.55663 3.66182 3.78532 3.85206 3.90862 3.95407 3.95611 3.98734 4.10102 4.13121 4.15338 4.21276 4.34252 4.40399 4.42867 4.45525 4.52463 4.57207 4.61254 4.63973 4.67443 4.73521 4.84538 4.84953 4.86321 4.89979 4.90531 4.94584 5.02262 5.15440 5.18289 5.22990 5.26819 5.59720 5.63581 5.72533 5.77667 6.11231 6.61649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.169 4.169 3 C -0.076 4.076 4 C -0.093 4.093 5 O -0.529 6.529 6 Si 0.704 3.296 7 C -0.684 4.684 8 S 2.706 3.294 9 O -0.950 6.950 10 O -0.945 6.945 11 N -1.095 6.095 12 C 0.114 3.886 13 H 0.105 0.895 14 C -0.130 4.130 15 C -0.075 4.075 16 H 0.103 0.897 17 C -0.072 4.072 18 C -0.082 4.082 19 C -0.119 4.119 20 C -0.119 4.119 21 C -0.120 4.120 22 C -0.123 4.123 23 C -0.114 4.114 24 C -0.155 4.155 25 C -0.049 4.049 26 C -0.115 4.115 27 S 0.156 5.844 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.104 0.896 32 H 0.371 0.629 33 H -0.228 1.228 34 H -0.234 1.234 35 H 0.421 0.579 36 H 0.103 0.897 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.121 0.879 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.076 0.924 46 H 0.105 0.895 47 H 0.099 0.901 48 H 0.081 0.919 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.189 -0.063 -4.021 4.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.287 4.287 3 C -0.087 4.087 4 C -0.204 4.204 5 O -0.334 6.334 6 Si 0.602 3.398 7 C -0.784 4.784 8 S 2.794 3.206 9 O -0.940 6.940 10 O -0.935 6.935 11 N -0.854 5.854 12 C 0.006 3.994 13 H 0.122 0.878 14 C -0.169 4.169 15 C -0.094 4.094 16 H 0.121 0.879 17 C -0.072 4.072 18 C -0.082 4.082 19 C -0.176 4.176 20 C -0.137 4.137 21 C -0.138 4.138 22 C -0.141 4.141 23 C -0.132 4.132 24 C -0.194 4.194 25 C -0.170 4.170 26 C -0.173 4.173 27 S 0.422 5.578 28 H 0.091 0.909 29 H 0.113 0.887 30 H 0.103 0.897 31 H 0.121 0.879 32 H 0.219 0.781 33 H -0.152 1.152 34 H -0.158 1.158 35 H 0.257 0.743 36 H 0.121 0.879 37 H 0.101 0.899 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.139 0.861 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.141 0.859 45 H 0.095 0.905 46 H 0.123 0.877 47 H 0.117 0.883 48 H 0.099 0.901 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.228 -1.706 -4.172 4.672 hybrid contribution 1.127 -0.250 0.538 1.274 sum -0.101 -1.956 -3.634 4.128 Atomic orbital electron populations 1.20823 0.87248 1.03429 1.04312 1.24434 1.00283 0.94990 1.09019 1.18577 0.90077 0.97163 1.02864 1.25752 1.05526 0.91655 0.97426 1.86633 1.36431 1.94483 1.15819 0.94740 0.79493 0.90621 0.74918 1.29492 1.11828 1.13361 1.23685 1.01610 0.73109 0.73490 0.72391 1.93605 1.42494 1.78263 1.79622 1.93539 1.77829 1.50312 1.71822 1.55316 1.21070 1.76115 1.32895 1.21872 0.88843 0.95160 0.93507 0.87785 1.23398 1.03499 0.96184 0.93787 1.21656 0.99674 0.97592 0.90442 0.87941 1.19497 0.93680 0.99976 0.94096 1.19781 0.96039 0.99397 0.92962 1.20866 0.92439 1.01543 1.02750 1.21061 0.96175 0.99983 0.96511 1.21170 0.93808 0.99724 0.99058 1.21149 0.99813 1.00298 0.92799 1.21008 0.95336 0.99565 0.97310 1.23917 1.00123 1.00187 0.95147 1.24589 1.00706 0.94986 0.96718 1.20985 0.88257 1.02635 1.05427 1.84440 0.95316 1.08700 1.69327 0.90914 0.88738 0.89739 0.87904 0.78127 1.15205 1.15845 0.74328 0.87867 0.89851 0.91173 0.91438 0.91193 0.86143 0.86108 0.85980 0.85858 0.90492 0.87719 0.88259 0.90056 0.87901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.10 8.53 36.00 0.31 0.20 16 2 C -0.17 -0.32 6.09 -36.00 -0.22 -0.54 16 3 C -0.08 -0.15 4.51 -106.24 -0.48 -0.63 16 4 C -0.09 -0.13 2.05 36.01 0.07 -0.06 16 5 O -0.53 -1.09 11.88 -35.23 -0.42 -1.51 16 6 Si 0.70 -0.32 27.56 -169.99 -4.69 -5.01 16 7 C -0.68 -1.14 5.86 -41.21 -0.24 -1.38 16 8 S 2.71 3.88 5.35 -107.50 -0.58 3.30 16 9 O -0.95 -2.99 14.72 -57.17 -0.84 -3.83 16 10 O -0.95 -3.28 14.55 -57.17 -0.83 -4.11 16 11 N -1.10 1.61 5.73 -4.20 -0.02 1.59 16 12 C 0.11 -0.19 4.20 -67.11 -0.28 -0.47 16 13 H 0.10 -0.18 3.48 -51.93 -0.18 -0.37 16 14 C -0.13 0.31 7.33 -25.92 -0.19 0.12 16 15 C -0.08 0.14 3.36 -90.81 -0.30 -0.16 16 16 H 0.10 -0.28 6.07 -51.93 -0.32 -0.59 16 17 C -0.07 0.02 5.29 -104.62 -0.55 -0.54 16 18 C -0.08 -0.02 5.88 -104.63 -0.62 -0.63 16 19 C -0.12 0.18 9.32 36.00 0.34 0.52 16 20 C -0.12 -0.05 9.70 -39.58 -0.38 -0.44 16 21 C -0.12 -0.03 10.05 -39.58 -0.40 -0.43 16 22 C -0.12 0.01 10.05 -39.58 -0.40 -0.39 16 23 C -0.11 0.04 8.62 -39.58 -0.34 -0.30 16 24 C -0.15 0.25 6.22 -25.77 -0.16 0.09 16 25 C -0.05 -0.05 6.50 -36.00 -0.23 -0.29 16 26 C -0.11 0.04 9.14 36.01 0.33 0.37 16 27 S 0.16 0.14 23.31 -107.50 -2.51 -2.37 16 28 H 0.07 -0.01 8.14 -51.93 -0.42 -0.44 16 29 H 0.09 0.14 7.54 -51.93 -0.39 -0.26 16 30 H 0.08 0.08 4.44 -51.93 -0.23 -0.15 16 31 H 0.10 0.11 2.76 -51.93 -0.14 -0.03 16 32 H 0.37 0.15 9.12 45.56 0.42 0.56 16 33 H -0.23 0.19 4.62 56.52 0.26 0.46 16 34 H -0.23 -0.29 5.46 56.52 0.31 0.02 16 35 H 0.42 -1.50 8.81 -34.48 -0.30 -1.81 16 36 H 0.10 -0.32 7.72 -51.93 -0.40 -0.72 16 37 H 0.08 -0.23 8.14 -51.93 -0.42 -0.65 16 38 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 39 H 0.07 -0.12 8.09 -51.93 -0.42 -0.54 16 40 H 0.07 -0.17 6.34 -51.93 -0.33 -0.49 16 41 H 0.12 -0.11 8.06 -52.49 -0.42 -0.53 16 42 H 0.12 -0.15 8.06 -52.49 -0.42 -0.57 16 43 H 0.12 -0.21 8.06 -52.49 -0.42 -0.63 16 44 H 0.12 -0.27 6.67 -52.48 -0.35 -0.62 16 45 H 0.08 -0.09 8.14 -51.93 -0.42 -0.51 16 46 H 0.10 -0.20 4.43 -51.93 -0.23 -0.43 16 47 H 0.10 -0.05 8.14 -51.93 -0.42 -0.47 16 48 H 0.08 -0.18 8.14 -51.93 -0.42 -0.60 16 49 H 0.10 -0.06 6.01 -51.93 -0.31 -0.37 16 LS Contribution 390.37 15.07 5.88 5.88 Total: 0.00 -7.12 390.37 -14.18 -21.30 By element: Atomic # 1 Polarization: -3.87 SS G_CDS: -6.43 Total: -10.29 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -3.75 Total: -4.95 kcal Atomic # 7 Polarization: 1.61 SS G_CDS: -0.02 Total: 1.59 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: -2.09 Total: -9.46 kcal Atomic # 14 Polarization: -0.32 SS G_CDS: -4.69 Total: -5.01 kcal Atomic # 16 Polarization: 4.02 SS G_CDS: -3.08 Total: 0.93 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -7.12 -14.18 -21.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9744656_15065288.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.524 kcal (2) G-P(sol) polarization free energy of solvation -7.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.03 seconds