Wall clock time and date at job start Mon Mar 8 2021 13:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.33393 * 125.20637 * 2 1 4 4 C 1.50703 * 122.53615 * 359.97438 * 3 2 1 5 5 O 1.42895 * 109.47147 * 65.09775 * 4 3 2 6 6 Si 1.86301 * 109.47106 * 305.09518 * 4 3 2 7 7 C 1.38428 * 114.92345 * 180.20823 * 3 2 1 8 8 S 1.76192 * 122.53782 * 179.76266 * 7 3 2 9 9 O 1.42100 * 106.39920 * 161.97870 * 8 7 3 10 10 O 1.42101 * 106.40690 * 29.05472 * 8 7 3 11 11 N 1.65600 * 107.21894 * 275.51541 * 8 7 3 12 12 C 1.46502 * 119.99913 * 65.00182 * 11 8 7 13 13 H 1.08995 * 112.84687 * 15.33475 * 12 11 8 14 14 C 1.53783 * 113.61372 * 146.53338 * 12 11 8 15 15 C 1.53778 * 87.08483 * 89.11121 * 14 12 11 16 16 H 1.08993 * 113.61806 * 270.88344 * 15 14 12 17 17 C 1.50701 * 113.61352 * 140.06283 * 15 14 12 18 18 C 1.38208 * 119.99948 * 119.73121 * 17 15 14 19 19 C 1.50695 * 120.00320 * 359.97438 * 18 17 15 20 20 C 1.38266 * 119.99956 * 179.81183 * 18 17 15 21 21 C 1.38215 * 119.99782 * 0.39777 * 20 18 17 22 22 C 1.38257 * 120.00055 * 359.85127 * 21 20 18 23 23 C 1.38214 * 120.00170 * 359.96571 * 22 21 20 24 24 C 1.53784 * 113.61160 * 244.13659 * 12 11 8 25 25 C 1.33385 * 114.91566 * 359.49537 * 7 3 2 26 26 C 1.50708 * 125.19943 * 180.24587 * 25 7 3 27 27 S 1.75884 * 109.60102 * 0.26890 * 25 7 3 28 28 H 1.08996 * 109.47286 * 183.56841 * 1 2 3 29 29 H 1.08999 * 109.47025 * 303.56603 * 1 2 3 30 30 H 1.08999 * 109.47338 * 63.56320 * 1 2 3 31 31 H 1.09003 * 109.47031 * 185.10003 * 4 3 2 32 32 H 0.96700 * 114.00170 * 68.47454 * 5 4 3 33 33 H 1.48503 * 109.99915 * 315.39179 * 6 4 3 34 34 H 1.48505 * 109.99927 * 76.70871 * 6 4 3 35 35 H 0.97005 * 120.00274 * 245.00021 * 11 8 7 36 36 H 1.08995 * 113.61430 * 203.66882 * 14 12 11 37 37 H 1.09001 * 113.61104 * 334.56549 * 14 12 11 38 38 H 1.09005 * 109.46812 * 89.99926 * 19 18 17 39 39 H 1.08995 * 109.47686 * 210.00230 * 19 18 17 40 40 H 1.09003 * 109.46998 * 330.00388 * 19 18 17 41 41 H 1.07989 * 120.00040 * 180.22724 * 20 18 17 42 42 H 1.07997 * 120.00054 * 179.83696 * 21 20 18 43 43 H 1.07995 * 120.00188 * 179.97438 * 22 21 20 44 44 H 1.08003 * 120.00379 * 179.97438 * 23 22 21 45 45 H 1.08996 * 113.61682 * 25.43470 * 24 12 11 46 46 H 1.09000 * 113.61157 * 156.33405 * 24 12 11 47 47 H 1.08993 * 109.46967 * 89.99938 * 26 25 7 48 48 H 1.08997 * 109.47034 * 210.00395 * 26 25 7 49 49 H 1.09003 * 109.47061 * 330.00134 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 1.7052 2.4847 -0.0006 5 8 0.9993 2.7110 1.2211 6 14 0.5359 2.6765 -1.4382 7 6 3.6380 0.8428 -0.0046 8 16 4.8356 2.1352 -0.0116 9 8 6.0607 1.5492 0.4068 10 8 4.2368 3.2408 0.6505 11 7 5.0514 2.5950 -1.5877 12 6 3.9479 3.2109 -2.3288 13 1 3.1418 3.5536 -1.6801 14 6 4.4050 4.2639 -3.3521 15 6 4.5160 3.1144 -4.3677 16 1 5.4922 2.6298 -4.3738 17 6 4.0357 3.4804 -5.7484 18 6 4.9037 3.4147 -6.8220 19 6 6.3304 2.9776 -6.6118 20 6 4.4620 3.7467 -8.0894 21 6 3.1547 4.1523 -8.2815 22 6 2.2879 4.2230 -7.2067 23 6 2.7283 3.8874 -5.9403 24 6 3.4635 2.3716 -3.5228 25 6 3.9750 -0.4477 0.0024 26 6 5.3860 -0.9771 0.0047 27 16 2.5209 -1.4372 0.0077 28 1 -0.3633 -1.0256 0.0640 29 1 -0.3633 0.5682 0.8563 30 1 -0.3634 0.4575 -0.9202 31 1 2.5149 3.2086 -0.0918 32 1 1.5683 2.7556 2.0017 33 1 1.1380 2.0933 -2.6640 34 1 -0.7539 2.0049 -1.1369 35 1 5.9085 2.4565 -2.0204 36 1 3.6349 4.9939 -3.6012 37 1 5.3624 4.7239 -3.1072 38 1 6.3992 1.8955 -6.7238 39 1 6.9710 3.4607 -7.3496 40 1 6.6532 3.2603 -5.6097 41 1 5.1392 3.6918 -8.9288 42 1 2.8104 4.4142 -9.2710 43 1 1.2665 4.5403 -7.3567 44 1 2.0513 3.9431 -5.1007 45 1 3.6611 1.3051 -3.4157 46 1 2.4363 2.5851 -3.8185 47 1 5.7266 -1.0991 1.0329 48 1 5.4134 -1.9408 -0.5039 49 1 6.0387 -0.2743 -0.5132 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_9744656_15065288.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:42:36 Heat of formation + Delta-G solvation = -4.255226 kcal Electronic energy + Delta-G solvation = -34290.394376 eV Core-core repulsion = 30018.122306 eV Total energy + Delta-G solvation = -4272.272069 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 394.111 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.34961 -40.35909 -39.25344 -38.69495 -37.18073 -37.06310 -34.43099 -34.39011 -33.60062 -31.33734 -30.99373 -28.14614 -27.78782 -26.74185 -26.12529 -25.90852 -23.32530 -23.12108 -21.87477 -21.08479 -20.42560 -19.92833 -19.32322 -18.65297 -18.18026 -17.53433 -17.37311 -16.88972 -16.66965 -16.39480 -15.98970 -15.93380 -15.50893 -15.31504 -15.11564 -14.91876 -14.85747 -14.66706 -14.53169 -14.30471 -14.05503 -13.92604 -13.89783 -13.69336 -13.61348 -13.49433 -13.41780 -13.23160 -13.13848 -13.09346 -12.86547 -12.76502 -12.59446 -12.42691 -12.01921 -11.87311 -11.71680 -11.67310 -11.36804 -11.29409 -11.16618 -10.87324 -10.58136 -10.11877 -9.62248 -9.61546 -9.36640 -4.87769 -0.91469 -0.54868 0.26869 0.48533 0.53819 0.57388 0.74258 1.27674 1.60490 1.86940 1.96434 2.49819 2.85220 3.05303 3.39339 3.45285 3.58855 3.62486 3.69398 3.78480 3.90924 3.92146 4.01167 4.05854 4.09336 4.12937 4.17650 4.25983 4.27770 4.35010 4.43501 4.48075 4.49010 4.58920 4.63818 4.69539 4.81031 4.81613 4.83443 4.86951 4.89575 4.99094 4.99437 5.02685 5.05035 5.09790 5.12010 5.24987 5.35277 5.43036 5.67622 5.69743 5.82284 5.95373 6.19856 6.55827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.186 4.186 3 C -0.083 4.083 4 C -0.110 4.110 5 O -0.539 6.539 6 Si 0.749 3.251 7 C -0.694 4.694 8 S 2.718 3.282 9 O -0.970 6.970 10 O -0.969 6.969 11 N -1.084 6.084 12 C 0.108 3.892 13 H 0.105 0.895 14 C -0.126 4.126 15 C -0.073 4.073 16 H 0.111 0.889 17 C -0.079 4.079 18 C -0.096 4.096 19 C -0.119 4.119 20 C -0.136 4.136 21 C -0.134 4.134 22 C -0.135 4.135 23 C -0.123 4.123 24 C -0.155 4.155 25 C -0.052 4.052 26 C -0.120 4.120 27 S 0.170 5.830 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.105 0.895 32 H 0.375 0.625 33 H -0.219 1.219 34 H -0.259 1.259 35 H 0.431 0.569 36 H 0.112 0.888 37 H 0.089 0.911 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.126 0.874 42 H 0.129 0.871 43 H 0.135 0.865 44 H 0.140 0.860 45 H 0.073 0.927 46 H 0.108 0.892 47 H 0.099 0.901 48 H 0.100 0.900 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.037 -0.195 -4.527 4.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.304 4.304 3 C -0.093 4.093 4 C -0.219 4.219 5 O -0.345 6.345 6 Si 0.647 3.353 7 C -0.793 4.793 8 S 2.806 3.194 9 O -0.960 6.960 10 O -0.958 6.958 11 N -0.846 5.846 12 C 0.000 4.000 13 H 0.123 0.877 14 C -0.165 4.165 15 C -0.091 4.091 16 H 0.129 0.871 17 C -0.079 4.079 18 C -0.096 4.096 19 C -0.175 4.175 20 C -0.154 4.154 21 C -0.152 4.152 22 C -0.152 4.152 23 C -0.140 4.140 24 C -0.194 4.194 25 C -0.173 4.173 26 C -0.179 4.179 27 S 0.436 5.564 28 H 0.102 0.898 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.123 0.877 32 H 0.223 0.777 33 H -0.144 1.144 34 H -0.185 1.185 35 H 0.270 0.730 36 H 0.130 0.870 37 H 0.107 0.893 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.144 0.856 42 H 0.147 0.853 43 H 0.153 0.847 44 H 0.158 0.842 45 H 0.092 0.908 46 H 0.126 0.874 47 H 0.118 0.882 48 H 0.119 0.881 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.970 -1.834 -4.671 5.111 hybrid contribution 1.045 -0.231 0.703 1.281 sum 0.075 -2.066 -3.968 4.474 Atomic orbital electron populations 1.20832 0.86971 1.04043 1.04008 1.24612 1.00762 0.95518 1.09544 1.18700 0.90284 0.97492 1.02852 1.26104 1.06404 0.91544 0.97883 1.86603 1.37044 1.94516 1.16365 0.94326 0.77154 0.89789 0.74027 1.29507 1.11754 1.13644 1.24428 1.01076 0.72461 0.73015 0.72837 1.93575 1.43354 1.78553 1.80494 1.93509 1.78167 1.51221 1.72951 1.55050 1.21787 1.75772 1.31958 1.21986 0.88828 0.95585 0.93578 0.87736 1.23434 1.04135 0.96041 0.92876 1.21679 0.99915 0.97839 0.89637 0.87139 1.19707 0.93773 0.99757 0.94680 1.20050 0.96963 0.99507 0.93075 1.20891 0.91597 1.01666 1.03388 1.21277 0.96572 1.00484 0.97081 1.21395 0.94030 1.00027 0.99777 1.21408 1.00508 1.00365 0.92963 1.21282 0.95718 0.99227 0.97795 1.23935 1.00439 0.99979 0.95070 1.24843 1.01463 0.94967 0.96013 1.21112 0.87356 1.03662 1.05741 1.84331 0.94909 1.08112 1.69059 0.89810 0.89489 0.89725 0.87742 0.77676 1.14374 1.18543 0.73036 0.86966 0.89260 0.90937 0.91296 0.90233 0.85557 0.85274 0.84702 0.84206 0.90844 0.87366 0.88230 0.88143 0.87738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.26 8.53 71.23 0.61 0.35 16 2 C -0.19 -0.76 6.09 24.59 0.15 -0.61 16 3 C -0.08 -0.36 4.51 -20.91 -0.09 -0.45 16 4 C -0.11 -0.36 2.05 71.24 0.15 -0.21 16 5 O -0.54 -2.73 11.88 -148.98 -1.77 -4.50 16 6 Si 0.75 -0.73 27.56 68.60 1.89 1.16 16 7 C -0.69 -2.48 5.86 21.22 0.12 -2.35 16 8 S 2.72 8.50 5.35 -56.49 -0.30 8.19 16 9 O -0.97 -6.39 14.72 -128.00 -1.88 -8.28 16 10 O -0.97 -7.30 14.55 -128.00 -1.86 -9.16 16 11 N -1.08 3.62 5.73 -167.19 -0.96 2.67 16 12 C 0.11 -0.43 4.20 45.52 0.19 -0.24 16 13 H 0.11 -0.42 3.48 -2.39 -0.01 -0.43 16 14 C -0.13 0.75 7.33 31.12 0.23 0.97 16 15 C -0.07 0.34 3.36 -10.92 -0.04 0.30 16 16 H 0.11 -0.72 6.07 -2.39 -0.01 -0.74 16 17 C -0.08 0.08 5.29 -19.86 -0.11 -0.02 16 18 C -0.10 -0.03 5.88 -19.87 -0.12 -0.15 16 19 C -0.12 0.41 9.32 71.23 0.66 1.07 16 20 C -0.14 -0.17 9.70 22.27 0.22 0.05 16 21 C -0.13 -0.11 10.05 22.27 0.22 0.11 16 22 C -0.13 0.04 10.05 22.27 0.22 0.26 16 23 C -0.12 0.16 8.62 22.27 0.19 0.35 16 24 C -0.16 0.64 6.22 31.22 0.19 0.84 16 25 C -0.05 -0.11 6.50 24.59 0.16 0.05 16 26 C -0.12 0.14 9.14 71.24 0.65 0.79 16 27 S 0.17 0.28 23.31 -56.49 -1.32 -1.03 16 28 H 0.08 -0.02 8.14 -2.39 -0.02 -0.04 16 29 H 0.09 0.34 7.54 -2.39 -0.02 0.32 16 30 H 0.08 0.20 4.44 -2.39 -0.01 0.19 16 31 H 0.11 0.27 2.76 -2.39 -0.01 0.26 16 32 H 0.37 0.79 9.12 -74.06 -0.68 0.12 16 33 H -0.22 0.57 4.62 99.48 0.46 1.03 16 34 H -0.26 -0.79 5.46 99.48 0.54 -0.25 16 35 H 0.43 -3.36 8.81 -96.74 -0.85 -4.21 16 36 H 0.11 -0.85 7.72 -2.39 -0.02 -0.86 16 37 H 0.09 -0.61 8.14 -2.39 -0.02 -0.63 16 38 H 0.07 -0.29 8.14 -2.38 -0.02 -0.31 16 39 H 0.07 -0.26 8.09 -2.39 -0.02 -0.28 16 40 H 0.08 -0.45 6.34 -2.39 -0.02 -0.46 16 41 H 0.13 -0.15 8.06 -2.92 -0.02 -0.17 16 42 H 0.13 -0.26 8.06 -2.91 -0.02 -0.28 16 43 H 0.14 -0.51 8.06 -2.91 -0.02 -0.53 16 44 H 0.14 -0.77 6.67 -2.91 -0.02 -0.79 16 45 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 46 H 0.11 -0.53 4.43 -2.39 -0.01 -0.54 16 47 H 0.10 -0.10 8.14 -2.39 -0.02 -0.12 16 48 H 0.10 -0.53 8.14 -2.39 -0.02 -0.55 16 49 H 0.10 -0.14 6.01 -2.39 -0.01 -0.16 16 Total: 0.00 -16.09 390.37 -3.45 -19.54 By element: Atomic # 1 Polarization: -8.82 SS G_CDS: -0.87 Total: -9.68 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: 3.62 Total: 1.10 kcal Atomic # 7 Polarization: 3.62 SS G_CDS: -0.96 Total: 2.67 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -5.52 Total: -21.94 kcal Atomic # 14 Polarization: -0.73 SS G_CDS: 1.89 Total: 1.16 kcal Atomic # 16 Polarization: 8.78 SS G_CDS: -1.62 Total: 7.16 kcal Total: -16.09 -3.45 -19.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9744656_15065288.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.281 kcal (2) G-P(sol) polarization free energy of solvation -16.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds