Wall clock time and date at job start Mon Mar 8 2021 14:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86300 * 109.47010 * 2 1 4 4 C 1.50703 * 109.47424 * 120.00195 * 2 1 3 5 5 C 1.33385 * 125.20459 * 65.28377 * 4 2 1 6 6 C 1.38426 * 114.92449 * 180.21035 * 5 4 2 7 7 S 1.76199 * 122.54285 * 179.76269 * 6 5 4 8 8 O 1.42101 * 106.40207 * 23.27645 * 7 6 5 9 9 O 1.42094 * 106.39983 * 156.19709 * 7 6 5 10 10 N 1.65598 * 107.21633 * 269.73973 * 7 6 5 11 11 C 1.46495 * 120.00593 * 64.99862 * 10 7 6 12 12 H 1.09005 * 112.84780 * 344.66461 * 11 10 7 13 13 C 1.53777 * 113.61657 * 115.86308 * 11 10 7 14 14 C 1.54049 * 86.98589 * 89.16459 * 13 11 10 15 15 H 1.09001 * 113.60792 * 270.88189 * 14 13 11 16 16 C 1.50701 * 113.69442 * 139.99432 * 14 13 11 17 17 C 1.38218 * 119.98337 * 142.46967 * 16 14 13 18 18 C 1.38247 * 120.04104 * 179.97438 * 17 16 14 19 19 C 1.38308 * 119.99791 * 0.02562 * 18 17 16 20 20 Cl 1.73597 * 120.01673 * 179.97438 * 19 18 17 21 21 C 1.38485 * 119.96193 * 359.97438 * 19 18 17 22 22 Cl 1.73604 * 120.01869 * 180.02562 * 21 19 18 23 23 C 1.38258 * 119.97858 * 322.18680 * 16 14 13 24 24 C 1.53776 * 87.07529 * 25.43415 * 14 13 11 25 25 C 1.33388 * 114.91713 * 359.49564 * 6 5 4 26 26 S 1.75885 * 109.59465 * 0.26814 * 25 6 5 27 27 H 0.96702 * 113.99856 * 299.99567 * 1 2 3 28 28 H 1.09002 * 109.46980 * 240.00394 * 2 1 3 29 29 H 1.48497 * 109.99942 * 178.68048 * 3 2 1 30 30 H 1.48492 * 110.00096 * 300.00179 * 3 2 1 31 31 H 1.08005 * 122.54122 * 359.97438 * 5 4 2 32 32 H 0.97004 * 119.99509 * 244.99913 * 10 7 6 33 33 H 1.09007 * 113.61809 * 203.67204 * 13 11 10 34 34 H 1.09002 * 113.61241 * 334.56654 * 13 11 10 35 35 H 1.08004 * 119.97796 * 359.97438 * 17 16 14 36 36 H 1.07999 * 120.00184 * 180.02562 * 18 17 16 37 37 H 1.07999 * 119.99788 * 0.03182 * 23 16 14 38 38 H 1.09007 * 113.60949 * 220.02302 * 24 14 13 39 39 H 1.09000 * 113.69295 * 89.13438 * 24 14 13 40 40 H 1.07996 * 125.20310 * 180.29185 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.7581 -2.0063 1.4948 6 6 2.3057 -2.4359 2.6914 7 16 2.1895 -4.1057 3.2415 8 8 1.9844 -4.8977 2.0796 9 8 3.2721 -4.3086 4.1393 10 7 0.8054 -4.2299 4.1423 11 6 -0.5010 -4.0362 3.5084 12 1 -0.4303 -3.5627 2.5291 13 6 -1.3848 -5.2946 3.5218 14 6 -1.9146 -4.8090 4.8844 15 1 -1.3289 -5.1644 5.7323 16 6 -3.3957 -5.0177 5.0677 17 6 -3.8936 -5.3880 6.3028 18 6 -5.2522 -5.5792 6.4724 19 6 -6.1141 -5.4006 5.4055 20 17 -7.8202 -5.6414 5.6178 21 6 -5.6154 -5.0297 4.1680 22 17 -6.6960 -4.8045 2.8281 23 6 -4.2565 -4.8330 4.0016 24 6 -1.5441 -3.3865 4.4328 25 6 2.9327 -1.4910 3.3938 26 16 2.8425 0.0407 2.5340 27 1 -0.3933 0.4417 0.7651 28 1 1.7923 -0.5138 -0.8900 29 1 3.5345 1.7703 0.0321 30 1 1.5614 2.4679 -1.2084 31 1 1.2274 -2.6694 0.8276 32 1 0.8598 -4.4308 5.0897 33 1 -2.1418 -5.3049 2.7376 34 1 -0.8193 -6.2247 3.5779 35 1 -3.2207 -5.5279 7.1360 36 1 -5.6405 -5.8681 7.4378 37 1 -3.8673 -4.5398 3.0379 38 1 -1.1071 -2.7771 5.2240 39 1 -2.3438 -2.8748 3.8973 40 1 3.4213 -1.6434 4.3447 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_9750038_15065232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:49:17 Heat of formation + Delta-G solvation = -26.453585 kcal Electronic energy + Delta-G solvation = -30134.689892 eV Core-core repulsion = 25608.468502 eV Total energy + Delta-G solvation = -4526.221390 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 419.986 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -41.52926 -39.70767 -39.54948 -38.26201 -37.64497 -37.53239 -37.48818 -36.90383 -34.40372 -32.04130 -31.92020 -31.51242 -27.31946 -26.91441 -26.33929 -25.01283 -24.17453 -22.96592 -21.53164 -20.83084 -20.19938 -19.32218 -18.86591 -18.35632 -17.93304 -17.69035 -17.28278 -17.01927 -16.75731 -16.44116 -16.03739 -15.84484 -15.51332 -15.29850 -15.17868 -15.00086 -14.84014 -14.38430 -14.29155 -14.16480 -14.02117 -13.94792 -13.69621 -13.20322 -13.13989 -13.07091 -12.99891 -12.97340 -12.88495 -12.66275 -12.53175 -12.29169 -12.23975 -12.06917 -11.82649 -11.80870 -11.68310 -11.45017 -10.78174 -10.70089 -10.28566 -10.06070 -9.94921 -9.65814 -5.32499 -0.83147 -0.55073 -0.18703 -0.04174 0.22631 0.49070 0.81860 0.92265 1.05523 1.18642 1.44432 1.76639 1.93706 2.25523 2.65299 3.12608 3.19860 3.28337 3.36965 3.43190 3.50345 3.53083 3.68678 3.74228 3.85889 3.89491 3.94092 4.06185 4.14048 4.18707 4.28017 4.39932 4.51716 4.53688 4.60599 4.69154 4.75870 4.80869 4.81119 4.88933 4.91197 4.97770 5.17007 5.30180 5.44995 5.75264 6.31550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.532 6.532 2 C -0.027 4.027 3 Si 0.656 3.344 4 C -0.228 4.228 5 C -0.046 4.046 6 C -0.688 4.688 7 S 2.710 3.290 8 O -0.945 6.945 9 O -0.954 6.954 10 N -1.096 6.096 11 C 0.127 3.873 12 H 0.106 0.894 13 C -0.145 4.145 14 C -0.076 4.076 15 H 0.106 0.894 16 C -0.054 4.054 17 C -0.099 4.099 18 C -0.095 4.095 19 C -0.037 4.037 20 Cl -0.048 7.048 21 C -0.028 4.028 22 Cl -0.046 7.046 23 C -0.098 4.098 24 C -0.135 4.135 25 C -0.081 4.081 26 S 0.159 5.841 27 H 0.380 0.620 28 H 0.127 0.873 29 H -0.238 1.238 30 H -0.231 1.231 31 H 0.157 0.843 32 H 0.420 0.580 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.139 0.861 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.082 0.918 39 H 0.099 0.901 40 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.160 4.535 4.266 6.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.337 6.337 2 C -0.140 4.140 3 Si 0.555 3.445 4 C -0.345 4.345 5 C -0.075 4.075 6 C -0.787 4.787 7 S 2.797 3.203 8 O -0.935 6.935 9 O -0.945 6.945 10 N -0.855 5.855 11 C 0.019 3.981 12 H 0.124 0.876 13 C -0.184 4.184 14 C -0.094 4.094 15 H 0.124 0.876 16 C -0.054 4.054 17 C -0.118 4.118 18 C -0.114 4.114 19 C -0.064 4.064 20 Cl -0.019 7.019 21 C -0.055 4.055 22 Cl -0.017 7.017 23 C -0.117 4.117 24 C -0.174 4.174 25 C -0.220 4.220 26 S 0.423 5.577 27 H 0.228 0.772 28 H 0.144 0.856 29 H -0.162 1.162 30 H -0.154 1.154 31 H 0.174 0.826 32 H 0.255 0.745 33 H 0.117 0.883 34 H 0.103 0.897 35 H 0.156 0.844 36 H 0.161 0.839 37 H 0.162 0.838 38 H 0.101 0.899 39 H 0.118 0.882 40 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 1.279 5.716 3.052 6.604 hybrid contribution -0.889 -1.367 -0.020 1.630 sum 0.390 4.349 3.032 5.316 Atomic orbital electron populations 1.86554 1.16414 1.81603 1.49117 1.24450 0.85315 1.09173 0.95078 0.95165 0.82187 0.77224 0.89915 1.25063 1.08683 0.98349 1.02442 1.19628 0.98240 0.94898 0.94685 1.30032 1.15755 1.26433 1.06529 1.01631 0.72142 0.73165 0.73394 1.93625 1.85138 1.65238 1.49472 1.93622 1.50993 1.85000 1.64845 1.55382 1.19798 1.87177 1.23123 1.21626 0.82113 0.97592 0.96727 0.87588 1.23656 0.99222 0.98956 0.96598 1.21678 0.90878 0.97661 0.99165 0.87624 1.19746 0.95322 0.97621 0.92757 1.21156 0.94611 0.98592 0.97409 1.21094 0.92775 0.99437 0.98093 1.20852 0.86821 1.04801 0.93945 1.98414 1.11089 1.95058 1.97307 1.20796 0.91879 1.04157 0.88697 1.98418 1.63792 1.95239 1.44248 1.20906 0.89991 1.00438 1.00328 1.23460 0.98505 0.95689 0.99734 1.25907 0.97836 0.95614 1.02675 1.84379 1.50377 1.10542 1.12415 0.77210 0.85591 1.16243 1.15405 0.82566 0.74456 0.88257 0.89687 0.84363 0.83897 0.83823 0.89901 0.88219 0.79700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.84 12.88 -35.23 -0.45 0.39 16 2 C -0.03 0.04 2.96 36.01 0.11 0.15 16 3 Si 0.66 -1.34 30.98 -169.99 -5.27 -6.61 16 4 C -0.23 0.27 5.70 -36.00 -0.21 0.07 16 5 C -0.05 0.02 9.49 -41.21 -0.39 -0.37 16 6 C -0.69 0.54 5.86 -41.21 -0.24 0.30 16 7 S 2.71 -0.16 5.74 -107.50 -0.62 -0.78 16 8 O -0.94 -3.07 17.39 -57.17 -0.99 -4.06 16 9 O -0.95 -2.59 17.64 -57.17 -1.01 -3.59 16 10 N -1.10 3.66 5.73 -4.20 -0.02 3.63 16 11 C 0.13 -0.48 4.42 -67.12 -0.30 -0.77 16 12 H 0.11 -0.44 7.96 -51.93 -0.41 -0.85 16 13 C -0.15 0.47 7.27 -25.78 -0.19 0.28 16 14 C -0.08 0.30 3.81 -90.82 -0.35 -0.04 16 15 H 0.11 -0.53 8.08 -51.93 -0.42 -0.95 16 16 C -0.05 0.13 5.29 -104.62 -0.55 -0.43 16 17 C -0.10 0.23 9.71 -39.59 -0.38 -0.15 16 18 C -0.10 0.11 9.83 -39.55 -0.39 -0.28 16 19 C -0.04 -0.02 6.32 -39.46 -0.25 -0.27 16 20 Cl -0.05 -0.07 27.96 -51.86 -1.45 -1.52 16 21 C -0.03 -0.01 6.32 -39.47 -0.25 -0.26 16 22 Cl -0.05 -0.06 27.96 -51.86 -1.45 -1.51 16 23 C -0.10 0.14 8.39 -39.55 -0.33 -0.19 16 24 C -0.13 0.64 7.32 -25.92 -0.19 0.45 16 25 C -0.08 0.14 10.70 29.04 0.31 0.45 16 26 S 0.16 -0.34 20.60 -107.50 -2.21 -2.55 16 27 H 0.38 -2.11 8.70 45.56 0.40 -1.71 16 28 H 0.13 -0.15 7.96 -51.93 -0.41 -0.57 16 29 H -0.24 -0.06 7.11 56.52 0.40 0.34 16 30 H -0.23 -0.17 7.11 56.52 0.40 0.23 16 31 H 0.16 -0.12 7.96 -52.48 -0.42 -0.54 16 32 H 0.42 -2.18 8.81 -34.47 -0.30 -2.48 16 33 H 0.10 -0.36 6.34 -51.93 -0.33 -0.69 16 34 H 0.08 -0.21 8.14 -51.93 -0.42 -0.63 16 35 H 0.14 -0.61 8.05 -52.48 -0.42 -1.03 16 36 H 0.14 -0.37 8.06 -52.49 -0.42 -0.79 16 37 H 0.14 -0.42 6.68 -52.49 -0.35 -0.77 16 38 H 0.08 -0.43 8.14 -51.93 -0.42 -0.85 16 39 H 0.10 -0.49 7.72 -51.93 -0.40 -0.89 16 40 H 0.19 -0.67 8.00 -52.49 -0.42 -1.09 16 LS Contribution 395.10 15.07 5.95 5.95 Total: 0.00 -9.90 395.10 -15.08 -24.98 By element: Atomic # 1 Polarization: -9.31 SS G_CDS: -3.96 Total: -13.27 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -3.60 Total: -1.07 kcal Atomic # 7 Polarization: 3.66 SS G_CDS: -0.02 Total: 3.63 kcal Atomic # 8 Polarization: -4.81 SS G_CDS: -2.46 Total: -7.26 kcal Atomic # 14 Polarization: -1.34 SS G_CDS: -5.27 Total: -6.61 kcal Atomic # 16 Polarization: -0.50 SS G_CDS: -2.83 Total: -3.33 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -2.90 Total: -3.02 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -9.90 -15.08 -24.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9750038_15065232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.470 kcal (2) G-P(sol) polarization free energy of solvation -9.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -15.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds